mRNA_P-wetherbeei_contig12275.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12275.1.1
Unique NamemRNA_P-wetherbeei_contig12275.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12275.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12275contigP-wetherbeei_contig12275:922..2018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size845
Hectar predicted targeting categorysignal anchor
Exons2
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.6847434-UTR-P-wetherbeei_contig12275:921..11871683185943.6847434-UTR-P-wetherbeei_contig12275:921..1187Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12275 922..1187 -
1683185943.7241335-UTR-P-wetherbeei_contig12275:2000..20181683185943.7241335-UTR-P-wetherbeei_contig12275:2000..2018Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12275 2001..2018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.6996465-CDS-P-wetherbeei_contig12275:1187..13161683185943.6996465-CDS-P-wetherbeei_contig12275:1187..1316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12275 1188..1316 -
1683185943.713326-CDS-P-wetherbeei_contig12275:1568..20001683185943.713326-CDS-P-wetherbeei_contig12275:1568..2000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12275 1569..2000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12275.1.1prot_P-wetherbeei_contig12275.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12275 1188..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12275.1.1

>prot_P-wetherbeei_contig12275.1.1 ID=prot_P-wetherbeei_contig12275.1.1|Name=mRNA_P-wetherbeei_contig12275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MHPVFALLCPLPPPRDCSTILRSDEGAEAQKRRFLAWSENQDLASFLNLC
QVFISWVFLLFPVSCFVFLSSRAALPAFLRVHFPPCCPSYLTFPRFSTKC
ILLLPRDLCQAGPYRDCPAKRLHGRVRLRMHGRTRLSMYGRQAHSQSQRS
AAVRRAKGRIILEGLRLVPRGGPIEGPRTSVKLCPA*
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mRNA from alignment at P-wetherbeei_contig12275:922..2018-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12275.1.1 ID=mRNA_P-wetherbeei_contig12275.1.1|Name=mRNA_P-wetherbeei_contig12275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1097bp|location=Sequence derived from alignment at P-wetherbeei_contig12275:922..2018- (Phaeothamnion wetherbeei SAG_119_79)
ATCCTCCTCCTCCCTTCAATGCACCCCGTTTTCGCTCTGTTGTGCCCTCT
CCCACCTCCTAGGGACTGCTCAACAATCTTGAGGTCCGACGAGGGCGCAG
AAGCACAAAAACGTCGCTTTTTGGCGTGGTCTGAAAATCAAGATTTGGCA
TCGTTTTTAAATCTGTGTCAAGTTTTCATTTCATGGGTTTTCCTTCTATT
TCCCGTATCATGTTTTGTATTCCTGTCGAGCCGAGCAGCTCTTCCTGCCT
TCCTGCGCGTCCACTTTCCTCCGTGCTGTCCATCCTACCTTACTTTTCCT
CGTTTTTCAACTAAATGCATCCTACTGCTGCCTCGCGACCTATGTCAGGC
CGGGCCCTATCGGGACTGTCCTGCCAAGAGGTTGCACGGACGTGTGAGGT
TGCGCATGCACGGACGTACGAGGTTGAGCATGTACGGACGTCAAGCGCAT
GTGCGTGCATCATGCGCATGCGTGGACACCACGCGCATGCAAGGAGGAAC
TATGGGTTTGCTTCAAGGTGTACTCGGATAGCGAAGGAGGGGCTACTCTT
TGGAACTATTTCTTGGAGCTTCCTGCAAGGAGGCCTCTCACAATTGATAC
ATTTGGATACCGTCTGATGCTTATGTATGGGTTTGTCATATGGAGGGACT
AGCCAAGTCCAACCTTCCCACAGACGCGCCGCTTCTCACTGCCCCTGCCT
AGTCTCAATCCCAGAGGAGCGCGGCTGTTCGGCGAGCAAAGGGGAGGATC
ATATTAGAAGGCCTCCGGCTGGTGCCCAGAGGAGGACCTATCGAAGGCCC
CCGAACCTCAGTCAAGCTTTGCCCAGCTTGACATCCGGCACCTGGTGTGG
TTCGAATCCACGCACGACGGGCGACGCAATCGGTGAGAGGGGGGTTCGGG
ATTTAATTTGAAGTTTCCGACCTCCAGGCTCATCATCGTGAGCATTTAGA
GGCGCAATTGTCCAGAGGAACGCCAACCAAAGGAGCATCGTCAAACGCGA
GCGCCCTCAGGGTCCGGCCGGTGGCAACACAGGTGAACGGCTTTGTCATG
AGCTCAGCGGCTGGTGTCTCATCATGGACCACAAGAAAGAGTACACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12275:922..2018-

>mRNA_P-wetherbeei_contig12275.1.1 ID=mRNA_P-wetherbeei_contig12275.1.1|Name=mRNA_P-wetherbeei_contig12275.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig12275:922..2018- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCCCGTTTTCGCTCTGTTGTGCCCTCTCCCACCTCCTAGGGACTG
CTCAACAATCTTGAGGTCCGACGAGGGCGCAGAAGCACAAAAACGTCGCT
TTTTGGCGTGGTCTGAAAATCAAGATTTGGCATCGTTTTTAAATCTGTGT
CAAGTTTTCATTTCATGGGTTTTCCTTCTATTTCCCGTATCATGTTTTGT
ATTCCTGTCGAGCCGAGCAGCTCTTCCTGCCTTCCTGCGCGTCCACTTTC
CTCCGTGCTGTCCATCCTACCTTACTTTTCCTCGTTTTTCAACTAAATGC
ATCCTACTGCTGCCTCGCGACCTATGTCAGGCCGGGCCCTATCGGGACTG
TCCTGCCAAGAGGTTGCACGGACGTGTGAGGTTGCGCATGCACGGACGTA
CGAGGTTGAGCATGTACGGACGTCAAGCGCATTCTCAATCCCAGAGGAGC
GCGGCTGTTCGGCGAGCAAAGGGGAGGATCATATTAGAAGGCCTCCGGCT
GGTGCCCAGAGGAGGACCTATCGAAGGCCCCCGAACCTCAGTCAAGCTTT
GCCCAGCTTGA
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