mRNA_P-wetherbeei_contig12273.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12273.2.1
Unique NamemRNA_P-wetherbeei_contig12273.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12273.2.1 vs. uniprot
Match: A0A517Y3I5_9BACT (Uncharacterized protein n=1 Tax=Urbifossiella limnaea TaxID=2528023 RepID=A0A517Y3I5_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 9.580e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    4 SGEGEPLARNAAGYDHRCQIESVRRLFEVLNALREWE 114
            SG GE L +NAAGYD R Q+ SVRRL EV++ L EWE
Sbjct:  244 SGAGEVLRKNAAGYDQRAQVGSVRRLVEVIHRLVEWE 280
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12273.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A517Y3I5_9BACT9.580e-764.86Uncharacterized protein n=1 Tax=Urbifossiella limn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12273contigP-wetherbeei_contig12273:1862..1984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185943.6578994-CDS-P-wetherbeei_contig12273:1861..19841683185943.6578994-CDS-P-wetherbeei_contig12273:1861..1984Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12273 1862..1984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12273.2.1prot_P-wetherbeei_contig12273.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12273 1862..1984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12273.2.1

>prot_P-wetherbeei_contig12273.2.1 ID=prot_P-wetherbeei_contig12273.2.1|Name=mRNA_P-wetherbeei_contig12273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MSGEGEPLARNAAGYDHRCQIESVRRLFEVLNALREWEAT*
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mRNA from alignment at P-wetherbeei_contig12273:1862..1984-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12273.2.1 ID=mRNA_P-wetherbeei_contig12273.2.1|Name=mRNA_P-wetherbeei_contig12273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig12273:1862..1984- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGGGAAGGCGAACCGCTCGCCAGGAACGCCGCGGGATATGATCA
CCGCTGCCAGATCGAGTCCGTGCGGCGACTCTTTGAAGTGCTCAACGCAT
TGCGGGAATGGGAGGCAACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12273:1862..1984-

>mRNA_P-wetherbeei_contig12273.2.1 ID=mRNA_P-wetherbeei_contig12273.2.1|Name=mRNA_P-wetherbeei_contig12273.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig12273:1862..1984- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCGGGGAAGGCGAACCGCTCGCCAGGAACGCCGCGGGATATGATCA
CCGCTGCCAGATCGAGTCCGTGCGGCGACTCTTTGAAGTGCTCAACGCAT
TGCGGGAATGGGAGGCAACGTGA
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