mRNA_P-wetherbeei_contig12197.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12197.1.1
Unique NamemRNA_P-wetherbeei_contig12197.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A6C0DW18_9ZZZZ (Collar domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DW18_9ZZZZ)

HSP 1 Score: 119 bits (298), Expect = 5.500e-32
Identity = 57/95 (60.00%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    7 HVGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTHT 291
            + G+ K++ +S+D NGWL CDGRSLSRT Y  L+++IGT+FG D S TFK+PD RGRVL  IG G+ LTAR LG  VG E H L+  EIP HTHT
Sbjct:   35 YAGDLKYSVQSSDHNGWLKCDGRSLSRTLYAKLFEVIGTAFGNDDSETFKLPDCRGRVLGTIGTGAGLTARSLGAMVGAETHTLTVGEIPSHTHT 129          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A835ZKI7_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKI7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.040e-32
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 SLHVGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDSSTTFKIPDYRGRVLAAIGEGSD-LTARELGDSVGEENHALSEDEIPGHTHT 291
            SLH+GE KWT RSTDFNGWL+CDGR LSR  Y  L+D+IGT FG+    TF +PD R R + A G+G + L+AR  GD+VG E H L+  E+P H+HT
Sbjct:   22 SLHIGELKWTCRSTDFNGWLVCDGRQLSRETYKDLFDVIGTDFGSGCGNTFNLPDCRSRGIGACGDGGNSLSARARGDAVGAETHTLTVGEMPSHSHT 119          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A6C0ALD8_9ZZZZ (Collar domain-containing protein n=2 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ALD8_9ZZZZ)

HSP 1 Score: 114 bits (286), Expect = 1.200e-29
Identity = 52/93 (55.91%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   10 VGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTH 288
            +G+ K+++   D +GW++CDGRSLSRTDY+ LYDIIG  FG++ S+TFKIPD RGRV   IG+G   T R LG S+GEE H L+  E+P H H
Sbjct:   49 IGDLKFSAHELDHHGWMICDGRSLSRTDYEELYDIIGIQFGSNHSSTFKIPDMRGRVAGGIGDGPSTTNRPLGTSLGEEEHTLTVGEMPTHNH 141          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A5B8XJ48_9RICK (Phage tail collar domain protein n=1 Tax=Candidatus Deianiraea vastatrix TaxID=2163644 RepID=A0A5B8XJ48_9RICK)

HSP 1 Score: 103 bits (258), Expect = 6.940e-24
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 1
Query:    1 SLHVGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGT-DSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTHT 291
            S  VG+YK ++++ + N WLLC+G+++SRT Y  L+ ++GT+FG  D + TF +PD+RGR  AAIG+GS LT R LG  VG E H L+ +E+P H+H+
Sbjct:  431 SFIVGDYKNSAQTANHNSWLLCNGQAVSRTTYSELFALLGTNFGAGDGTLTFNLPDFRGRTFAAIGQGSGLTNRTLGQKVGAETHTLTVNEMPSHSHS 528          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: UPI00115D163A (phage tail fiber protein n=1 Tax=Telmatospirillum sp. J64-1 TaxID=2502183 RepID=UPI00115D163A)

HSP 1 Score: 96.7 bits (239), Expect = 2.610e-21
Identity = 46/96 (47.92%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    7 HVGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGT-DSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTHT 291
            H GE +  + S+  +GWLLC G+++SRT Y  L+ +IGT++G  + S+TF +PD+RGR    +G+GS LT R LG  VG E H LS +EIP H+H+
Sbjct:  409 HTGEIRMFAGSSAPSGWLLCQGQAVSRTTYSALFAVIGTTYGAGNGSSTFNLPDFRGRAPIGVGQGSGLTNRALGARVGAETHTLSINEIPSHSHS 504          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A835ZHE3_9STRA (Collar domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.680e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   10 VGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDS-STTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTH 288
            +G+YK++ R  DF+ WL CDGRSLSR  + +L+ ++G +FG  S STTFK+PD RGRV+A++          +G S G E HALS  EIP H+H
Sbjct:    4 IGDYKFSMRDGDFDRWLKCDGRSLSRVAFPVLFAMLGNTFGAASTSTTFKLPDARGRVIASVSGD-----HAVGGSSGAETHALSVSEIPSHSH 92          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A6C0DFY0_9ZZZZ (Collar domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DFY0_9ZZZZ)

HSP 1 Score: 89.7 bits (221), Expect = 6.270e-20
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   10 VGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDSSTTFKIPDYRGRVLAAIGEGSDLTAREL----GDSVGEENHALSEDEIPGHTH 288
             G+ K +    D  GWL CDGR L RT Y++L+ +IGT+FGT S+T FK+PD +GRV+ ++G   D+  R      GDSVGE +H L+  E+P H H
Sbjct:   19 TGDTKTSFVIDDHMGWLKCDGRLLDRTTYNLLFQVIGTTFGTTSATNFKLPDPQGRVMGSVGPVVDVNGRTRTYAPGDSVGELDHQLTIPEMPSHNH 115          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A6L4A8E9_9CHLR (Collar domain-containing protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A6L4A8E9_9CHLR)

HSP 1 Score: 89.7 bits (221), Expect = 1.280e-19
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   25 WTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGT-DSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTHT 291
            W   ST   GWL+ DG  +SRT Y+ L+D + T+FG  D STTF IPD+RGRV    G G+ LTAR LG   G E H LS  ++P H HT
Sbjct:   57 WAGNSTP-TGWLVADGSCVSRTTYEDLFDTLSTTFGVCDGSTTFGIPDFRGRVPVGAGAGTGLTARSLGQQFGSETHMLSTVQLPTHAHT 145          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: A0A815DS73_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815DS73_9BILA)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-19
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   49 NGWLLCDGRSLSRTDYDILYDIIGTSFGT-DSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTH 288
            +GWL CDG ++SR  Y  L+ +IGT +G  D  TTF +PD+RGR L  +G+G  LT R LG   G ENH LS +E+P H+H
Sbjct:   43 HGWLSCDGNAISRLQYQNLFLVIGTIYGVGDHVTTFNLPDFRGRTLVGVGQGLTLTNRLLGQRFGTENHILSVNEMPAHSH 123          
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Match: UPI001F3598D8 (tail fiber protein n=2 Tax=Kordia aestuariivivens TaxID=2759037 RepID=UPI001F3598D8)

HSP 1 Score: 87.8 bits (216), Expect = 1.650e-19
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   10 VGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDSSTTFKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTHT 291
            +GE K  S +T  +GW  CDG+ L+ +DY +L+++IGT++G D +TTF +PD RGR    IG G  L+A  LG S G E   L   E+P HTH+
Sbjct:   35 IGEIKTVSFATVPSGWAKCDGQLLNISDYGVLFNLIGTTYGGDGTTTFALPDLRGRSPIHIGNGPGLSAINLGQSDGAETKVLGVTELPSHTHS 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12197.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0DW18_9ZZZZ5.500e-3260.00Collar domain-containing protein n=1 Tax=viral met... [more]
A0A835ZKI7_9STRA9.040e-3257.14Collar domain-containing protein n=1 Tax=Tribonema... [more]
A0A6C0ALD8_9ZZZZ1.200e-2955.91Collar domain-containing protein n=2 Tax=viral met... [more]
A0A5B8XJ48_9RICK6.940e-2448.98Phage tail collar domain protein n=1 Tax=Candidatu... [more]
UPI00115D163A2.610e-2147.92phage tail fiber protein n=1 Tax=Telmatospirillum ... [more]
A0A835ZHE3_9STRA5.680e-2048.94Collar domain-containing protein n=1 Tax=Tribonema... [more]
A0A6C0DFY0_9ZZZZ6.270e-2046.39Collar domain-containing protein n=1 Tax=viral met... [more]
A0A6L4A8E9_9CHLR1.280e-1951.11Collar domain-containing protein n=1 Tax=Anaerolin... [more]
A0A815DS73_9BILA1.410e-1950.62Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
UPI001F3598D81.650e-1945.74tail fiber protein n=2 Tax=Kordia aestuariivivens ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12197contigP-wetherbeei_contig12197:277..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1430440.MGMSRv2_2248
PFAMsCollar
Model size291
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.34e-19
EggNOG OGsCOG4675@1|root,COG4675@2|Bacteria,1MZY9@1224|Proteobacteria,2UC68@28211|Alphaproteobacteria,2JTAV@204441|Rhodospirillales
DescriptionPhage Tail Collar Domain
Cds size291
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.2566128-CDS-P-wetherbeei_contig12197:276..5671683185941.2566128-CDS-P-wetherbeei_contig12197:276..567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12197 277..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12197.1.1prot_P-wetherbeei_contig12197.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12197 277..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12197.1.1

>prot_P-wetherbeei_contig12197.1.1 ID=prot_P-wetherbeei_contig12197.1.1|Name=mRNA_P-wetherbeei_contig12197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
SLHVGEYKWTSRSTDFNGWLLCDGRSLSRTDYDILYDIIGTSFGTDSSTT
FKIPDYRGRVLAAIGEGSDLTARELGDSVGEENHALSEDEIPGHTHT
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mRNA from alignment at P-wetherbeei_contig12197:277..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12197.1.1 ID=mRNA_P-wetherbeei_contig12197.1.1|Name=mRNA_P-wetherbeei_contig12197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig12197:277..567- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTTCACGTCGGAGAATATAAGTGGACCAGTCGAAGCACCGATTTCAA CGGATGGCTCTTGTGCGATGGAAGGTCGTTGTCGCGTACGGACTACGACA TTCTCTACGACATCATCGGAACTAGTTTTGGAACTGACAGTTCAACCACG TTCAAGATTCCTGATTATAGAGGGCGGGTCCTTGCAGCAATTGGAGAGGG GTCTGATCTGACAGCTCGTGAACTCGGCGACAGCGTCGGGGAAGAGAACC ACGCGCTATCCGAAGATGAGATTCCAGGTCACACGCACACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12197:277..567-

>mRNA_P-wetherbeei_contig12197.1.1 ID=mRNA_P-wetherbeei_contig12197.1.1|Name=mRNA_P-wetherbeei_contig12197.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig12197:277..567- (Phaeothamnion wetherbeei SAG_119_79)
TCGCTTCACGTCGGAGAATATAAGTGGACCAGTCGAAGCACCGATTTCAA
CGGATGGCTCTTGTGCGATGGAAGGTCGTTGTCGCGTACGGACTACGACA
TTCTCTACGACATCATCGGAACTAGTTTTGGAACTGACAGTTCAACCACG
TTCAAGATTCCTGATTATAGAGGGCGGGTCCTTGCAGCAATTGGAGAGGG
GTCTGATCTGACAGCTCGTGAACTCGGCGACAGCGTCGGGGAAGAGAACC
ACGCGCTATCCGAAGATGAGATTCCAGGTCACACGCACACC
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