mRNA_P-wetherbeei_contig12193.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12193.2.1
Unique NamemRNA_P-wetherbeei_contig12193.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A183N1U6_9TREM (Uncharacterized protein n=1 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183N1U6_9TREM)

HSP 1 Score: 96.7 bits (239), Expect = 1.130e-21
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLA 342
            E L +++P R W + NG+ W+QRAS T  TR +V  L  ++D  L +RQAR   IC  R  +++++  EL+RQV + C ERGLLLLR RD++R+T+ A   L+  S+A G R A
Sbjct:   65 EILNSILPPREWSE-NGQLWIQRASSTPATRLDVVNLQEELDRRLQQRQARETGICPVRRELYNQVFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSIAFGMRKA 177          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A7M3PZK3_SPIER (Hypothetical protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A7M3PZK3_SPIER)

HSP 1 Score: 97.1 bits (240), Expect = 1.290e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLADENADELAALSRR 381
            E L +++P R W + NG+ W+QR S T  TR +V  L  ++D  L +RQAR   IC  R  ++S++  EL+RQV + C ERGLLLLR RD++R+T+ A   L+  SVA G R A +     A L +R
Sbjct:   33 EILNSILPPREWSE-NGQLWIQRVSSTPATRLDVVNLQEELDRRLQQRQARETGICPVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKADLDKR 158          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A1W0AA42_9STRA (Axonemal dynein light intermediate polypeptide 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA42_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.460e-21
Identity = 56/133 (42.11%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRR---LADENA----DELAALSR 378
            E L A++P R W++ +G  W Q  SC  T+R +V  L  K+DA++   QA+   +CA RER+ +++  E++RQV L CPERGLLLLR RD++R+T+EA   L+  S++ G R   +A+E      D+LA+L +
Sbjct:   56 EILRAMLPPREWKEFSG-TWRQNVSCIPTSRTDVVALQEKLDASINNEQAKKSGVCANRERLHAQVFDEIIRQVTLACPERGLLLLRIRDEIRMTIEAYQALYNTSLSFGIRKTVMAEEGMQQIEDKLASLKK 187          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: UPI0015AA558B (axonemal dynein light intermediate polypeptide 1 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AA558B)

HSP 1 Score: 97.1 bits (240), Expect = 2.480e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLA 342
            E L A++P R W D N + WVQ+ SCT  TR +V  L   +D  L +RQAR   IC  R  ++++   EL+RQV + C ERGLLLLR RD++R+T+ A   L+  SVA G R A
Sbjct:   64 EILNAMLPPREWMD-NSQLWVQQVSCTPCTRMDVVKLQELLDLKLQQRQARETGICPVRRELYTQCFDELIRQVTISCSERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKA 176          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A0X3NP39_SCHSO (Inner dynein arm light chain n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A0X3NP39_SCHSO)

HSP 1 Score: 97.1 bits (240), Expect = 2.630e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLADENADELAALSRR 381
            E L +++P R W + NG+ W+QR S T  TR +V  L  ++D  L +RQAR   IC  R  ++S++  EL+RQV + C ERGLLLLR RD++R+T+ A   L+  SVA G R A +     A L +R
Sbjct:   68 EILNSILPPREWSE-NGQLWIQRVSSTPATRLDVVNLQEELDRRLQQRQARETGICPVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKADLDKR 193          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A654H185_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654H185_9CEST)

HSP 1 Score: 97.1 bits (240), Expect = 2.840e-21
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLADENADELAALSRR 381
            E L +++P R W + NG+ W+QR S T  TR +V  L  ++D  L +RQAR   IC  R  ++S++  EL+RQV + C ERGLLLLR RD++R+T+ A   L+  SVA G R A +     A L +R
Sbjct:   77 EILNSILPPREWSE-NGQLWIQRVSSTPATRLDVVNLQEELDRRLQQRQARETGICPVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGKADLDKR 202          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A9THP0_PHYPA (Inner dynein arm light chain n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9THP0_PHYPA)

HSP 1 Score: 96.7 bits (239), Expect = 2.860e-21
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLA 342
            E L++++P R+W+ G+ + W+QR S    TR +V  L  K+D  L  RQAR   IC  RE ++ +   EL+RQVC+ C ERGLLLLR RD+LR+T+ A   L+  S+  G R A
Sbjct:   53 EILDSILPPRQWKVGD-QSWIQRVSSAPATRLDVIQLQEKLDQQLEHRQAREVGICPIREELYGQCFDELIRQVCINCAERGLLLLRVRDELRMTIAAYQTLYESSIGFGLRKA 165          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A0R3XCU9_HYDTA (Uncharacterized protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3XCU9_HYDTA)

HSP 1 Score: 94.7 bits (234), Expect = 2.970e-21
Identity = 54/127 (42.52%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLADENADELAALSRR 381
            E L +++P R W D N + W+Q+ S T  TR +V  L  ++D  L +RQAR   IC  R  ++S++  EL+RQV + C ERGLLLLR RD++R+T+ A   L+  SVA G R A +     A L +R
Sbjct:   32 EILNSILPPREWTDNN-QLWIQQVSSTPATRLDVVNLQEELDRRLQQRQARETGICPIRRELYSQVFDELIRQVTINCTERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKALQAEQGRAELDKR 157          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A3S5CTD0_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5CTD0_9PLAT)

HSP 1 Score: 95.5 bits (236), Expect = 3.010e-21
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLA 342
            E L +++P R W + NG+ WVQ+ S T  TR +V  L  ++D  L +RQAR   IC  R  ++S++  EL+RQV + C ERGLLLLR RD++R+T+ A   L+  SVA G R A
Sbjct:   60 EILNSILPPREWTE-NGQLWVQQVSSTPATRLDVVNLQEELDRRLQQRQARETGICPVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGMRKA 172          
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Match: A0A1B6K586_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Homalodisca TaxID=139475 RepID=A0A1B6K586_9HEMI)

HSP 1 Score: 96.7 bits (239), Expect = 3.290e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:    1 EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQARAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARIELHRDSVALGRRLA 342
            E L  ++P R W + NGE W Q  S    TRE+V  LG ++D AL ++QAR   IC  R R+F +   EL+RQV + C ERGLLLLR RD++R+T+ A   L+  S+A G R A
Sbjct:   64 EVLNCILPPREWEE-NGELWRQTVSSEPATREDVKKLGEQLDTALQQQQARETGICPVRRRLFEQCFDELIRQVTVNCCERGLLLLRVRDEMRMTMAAYQTLYESSIAFGIRKA 176          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12193.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A183N1U6_9TREM1.130e-2144.74Uncharacterized protein n=1 Tax=Schistosoma margre... [more]
A0A7M3PZK3_SPIER1.290e-2143.31Hypothetical protein n=2 Tax=Diphyllobothriidae Ta... [more]
A0A1W0AA42_9STRA1.460e-2142.11Axonemal dynein light intermediate polypeptide 1 n... [more]
UPI0015AA558B2.480e-2146.49axonemal dynein light intermediate polypeptide 1 n... [more]
A0A0X3NP39_SCHSO2.630e-2143.31Inner dynein arm light chain n=2 Tax=Diphyllobothr... [more]
A0A654H185_9CEST2.840e-2143.31Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A9THP0_PHYPA2.860e-2144.74Inner dynein arm light chain n=2 Tax=Physcomitrium... [more]
A0A0R3XCU9_HYDTA2.970e-2142.52Uncharacterized protein n=1 Tax=Hydatigena taeniae... [more]
A0A3S5CTD0_9PLAT3.010e-2145.61Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A1B6K586_9HEMI3.290e-2146.49Uncharacterized protein (Fragment) n=2 Tax=Homalod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12193contigP-wetherbeei_contig12193:1292..1840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000020213
PFAMsAx_dynein_light
Model size549
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.69e-23
EggNOG OGsKOG4001@1|root,KOG4001@2759|Eukaryota,1MJFQ@121069|Pythiales
DescriptionAxonemal dynein light chain
Cds size549
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185941.2007248-CDS-P-wetherbeei_contig12193:1291..18401683185941.2007248-CDS-P-wetherbeei_contig12193:1291..1840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12193 1292..1840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12193.2.1prot_P-wetherbeei_contig12193.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12193 1292..1840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12193.2.1

>prot_P-wetherbeei_contig12193.2.1 ID=prot_P-wetherbeei_contig12193.2.1|Name=mRNA_P-wetherbeei_contig12193.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
EALEALVPSRRWRDGNGEQWVQRASCTETTREEVTLLGLKVDAALAERQA
RAYPICAARERVFSELLSELLRQVCLECPERGLLLLRARDQLRLTLEARI
ELHRDSVALGRRLADENADELAALSRRAAALGAAVAALTANVAVLSEKEA
GDGARQAAATAAADELRRREDLQALKAEQNALR
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mRNA from alignment at P-wetherbeei_contig12193:1292..1840-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12193.2.1 ID=mRNA_P-wetherbeei_contig12193.2.1|Name=mRNA_P-wetherbeei_contig12193.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig12193:1292..1840- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGCTCGAAGCGCTCGTGCCGAGTCGACGGTGGAGAGATGGCAACGG GGAGCAGTGGGTGCAGCGGGCCAGCTGCACCGAGACAACGCGGGAGGAGG TTACTTTGCTCGGCCTCAAGGTCGACGCGGCACTCGCGGAGCGGCAGGCG CGCGCCTACCCTATCTGCGCCGCCCGCGAGCGCGTCTTCTCTGAACTCTT ATCCGAATTGTTGCGGCAGGTCTGCTTGGAGTGCCCCGAGCGCGGGCTGC TCCTCTTAAGGGCGCGCGACCAGCTGCGGCTGACGCTCGAAGCGAGGATC GAACTGCACCGCGACAGTGTCGCGCTCGGCCGCCGCCTCGCCGACGAGAA CGCTGACGAACTGGCGGCTCTCTCGCGGCGCGCGGCGGCGCTGGGGGCAG CCGTGGCGGCGCTGACGGCGAACGTGGCGGTTCTGAGCGAGAAGGAGGCC GGCGACGGCGCGCGCCAGGCGGCGGCGACGGCAGCAGCAGACGAACTGCG GCGGCGGGAGGACCTCCAGGCGCTCAAGGCGGAGCAGAACGCGCTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12193:1292..1840-

>mRNA_P-wetherbeei_contig12193.2.1 ID=mRNA_P-wetherbeei_contig12193.2.1|Name=mRNA_P-wetherbeei_contig12193.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig12193:1292..1840- (Phaeothamnion wetherbeei SAG_119_79)
GAGGCGCTCGAAGCGCTCGTGCCGAGTCGACGGTGGAGAGATGGCAACGG
GGAGCAGTGGGTGCAGCGGGCCAGCTGCACCGAGACAACGCGGGAGGAGG
TTACTTTGCTCGGCCTCAAGGTCGACGCGGCACTCGCGGAGCGGCAGGCG
CGCGCCTACCCTATCTGCGCCGCCCGCGAGCGCGTCTTCTCTGAACTCTT
ATCCGAATTGTTGCGGCAGGTCTGCTTGGAGTGCCCCGAGCGCGGGCTGC
TCCTCTTAAGGGCGCGCGACCAGCTGCGGCTGACGCTCGAAGCGAGGATC
GAACTGCACCGCGACAGTGTCGCGCTCGGCCGCCGCCTCGCCGACGAGAA
CGCTGACGAACTGGCGGCTCTCTCGCGGCGCGCGGCGGCGCTGGGGGCAG
CCGTGGCGGCGCTGACGGCGAACGTGGCGGTTCTGAGCGAGAAGGAGGCC
GGCGACGGCGCGCGCCAGGCGGCGGCGACGGCAGCAGCAGACGAACTGCG
GCGGCGGGAGGACCTCCAGGCGCTCAAGGCGGAGCAGAACGCGCTCCGG
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