mRNA_P-wetherbeei_contig12180.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12180.1.1
Unique NamemRNA_P-wetherbeei_contig12180.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 9.940e-41
Identity = 75/118 (63.56%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:    1 GDALVQVTLLNSDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRIIRDSQETRRQIDAM 354
            GDA+++VTLLN++ GF +++YG+SIT+RRTIK+  GGG   L+G  G V S+++ +L ++LD LNIQVDNPCAVLDQEN+KKFLQGSE DKY FFMKATDL+RI  DS ET R I  M
Sbjct:  246 GDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGG-FALVGADGAVKSKEKSELTRLLDTLNIQVDNPCAVLDQENSKKFLQGSESDKYAFFMKATDLERIHADSLETGRSISTM 362
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.890e-33
Identity = 62/104 (59.62%), Postives = 85/104 (81.73%), Query Frame = 1 
Query:    1 GDALVQVTLLNSDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRI 312
            GDA+++VTLLN++ GF +++YG+SIT+RRTIK+  GGG   L+G   +V S ++ +L +ML+ LNIQVDNP AVLDQEN+KKF+ G+E+DKY FF+KATDL RI
Sbjct:  153 GDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGG-FALLGHDRKVKSTNKAELLRMLEFLNIQVDNPVAVLDQENSKKFILGTEKDKYEFFLKATDLGRI 255
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A836CML4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.460e-31
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 GDALVQVTLLNSDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRIIR 318
            GDA V+V +LN+ DG ++D YG SITVRR IKR G    +EL+   G V+ RDRK+LE++LD  NI V+NPC VLDQEN+KKFL+GS+ DKY FF+KAT  D + R
Sbjct:  144 GDAEVEVKMLNTPDGHKFDVYGQSITVRRVIKR-GASAVVELLSHDGTVVCRDRKELERILDSFNISVENPCVVLDQENSKKFLKGSDEDKYMFFLKATFTDTVPR 248
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A1E7FGS7_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGS7_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.010e-31
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 1 
Query:    7 ALVQVTLLNS-DDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRIIRDSQETRRQIDAM 354
            A ++VTLLN  DD F++D YGDSITV RTI   GG    +L G      SR +KDL++MLD LNIQV+NP A+LDQE AKKFL G + DKY FFMKAT+L+RI      T  QID M
Sbjct:   62 AKIRVTLLNKGDDSFKHDVYGDSITVERTIALRGGYNGYKLYGADDVEQSRSKKDLDEMLDKLNIQVENPVAILDQEEAKKFLTGKDTDKYRFFMKATELERIDNTYGSTMEQIDEM 178
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A1Z5K864_FISSO (AAA_23 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K864_FISSO)

HSP 1 Score: 124 bits (311), Expect = 1.210e-30
Identity = 65/118 (55.08%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    4 DALVQVTLLNS-DDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRIIRDSQETRRQIDAM 354
            +A+V+V+L N   D +E DKYG +ITV RTI R+GG    +L+ E G  +SR +KDL +MLDHLNIQVDNP AVLDQE AKKFL GS+ +KY FF KA DL RI      T  +I+ +
Sbjct:  287 EAIVRVSLTNEGSDAYEADKYGKTITVERTITRSGGFNGYKLLDEAGREVSRKKKDLCRMLDHLNIQVDNPVAVLDQEKAKKFLLGSDTEKYEFFQKANDLSRINAKYSATLEEIEEL 404
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A6V2GEJ9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GEJ9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.040e-29
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:    7 ALVQVTLLN-SDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRI----------IRDSQETRRQI 345
            A V+VTLLN  DDGF+ D YGD+ITV R+I   GG    +L+ +  +  SR ++DL+ MLD LNIQV+NP AVLDQE AKKFL G E DKY FF+KAT+L+R+          I+D +ET+ ++
Sbjct:  177 AKVRVTLLNRGDDGFQRDVYGDTITVERSISLRGGYNGYKLLDDQLKEKSRSKRDLDAMLDQLNIQVENPVAVLDQEEAKKFLMGKEEDKYAFFIKATELERLDQTYASAVDNIQDLEETKNRV 300
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A7S1W016_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1W016_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.270e-29
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:    7 ALVQVTLLN-SDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRI----------IRDSQETRRQI 345
            A V+VTLLN  DDGF+ D YGD+ITV R+I   GG    +L+ +  +  SR +KDL+ MLD LNIQV+NP AVLDQE AKKFL G E DKY FF+KAT+L+R+          I+D +ET+ ++
Sbjct:   21 AKVRVTLLNRGDDGFQRDVYGDTITVERSISLRGGYNGYKLLDDQLKEKSRSKKDLDAMLDQLNIQVENPVAVLDQEEAKKFLMGKEEDKYAFFIKATELERLDQTYASAVDNIQDLEETKNRV 144
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A7S4RG96_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RG96_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.250e-28
Identity = 64/124 (51.61%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:    7 ALVQVTLLN-SDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRI----------IRDSQETRRQI 345
            A V+VTLLN  DDGF+ D YGD+ITV R+I   GG    +L+ +  +  SR ++DL+ MLD LNIQV+NP AVLDQE AKKFL G E DKY FF+KAT+L+R+          I+D +ET+ ++
Sbjct:  177 AKVRVTLLNRGDDGFQRDVYGDTITVERSISLRGGYNGYKLLDDQLKEKSRSKRDLDAMLDQLNIQVENPVAVLDQEEAKKFLMGKEEDKYAFFIKATELERLDQTYASAVDNIQDLEETKNRV 300
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A7S1FSU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FSU6_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.310e-28
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 GDALVQVTLLN-SDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRIIR 318
            G ++V+V LLN  DD +E+D YGD +TV RTI+R G GG   L+ E   V S  R DL+ +LDHLNIQVDNP AVLDQE AK+FL G   DKY FF KAT+L+RI R
Sbjct:  169 GKSVVKVRLLNRGDDAYEHDLYGDYVTVERTIERNGSGG-YRLLDEHEAVKSMRRGDLDSLLDHLNIQVDNPVAVLDQEEAKRFLTGKPEDKYAFFTKATELERIDR 274
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BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Match: A0A7S2UR98_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UR98_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.500e-28
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:    7 ALVQVTLLNS-DDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVLSRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATDLDRI 312
            A V+VTLLN  +DG++ + YGDSIT+ R+I   GG     L+   G+  SR +KDLE MLD LNIQVDNP AVLDQE AKKFL G  +DKY FF KAT+L+RI
Sbjct:  134 AKVRVTLLNGGEDGYKREMYGDSITIERSITLRGGYNGYRLLDHDGKERSRSKKDLEAMLDQLNIQVDNPVAVLDQEEAKKFLTGRPQDKYDFFAKATELERI 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M2_ECTSI9.940e-4163.56Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G4M1_ECTSI8.890e-3359.62Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A836CML4_9STRA1.460e-3158.49P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1E7FGS7_9STRA5.010e-3157.26p-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Z5K864_FISSO1.210e-3055.08AAA_23 domain-containing protein n=1 Tax=Fistulife... [more]
A0A6V2GEJ9_9STRA1.040e-2951.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1W016_9STRA5.270e-2952.42Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RG96_9STRA1.250e-2851.61Hypothetical protein (Fragment) n=3 Tax=Ditylum br... [more]
A0A7S1FSU6_9STRA1.310e-2858.88Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2UR98_9STRA2.500e-2859.22Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12180contigP-wetherbeei_contig12180:100..1253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G4M2
Preferred nameSMC6
PFAMsAAA_23,SMC_N
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
Exons3
Evalue1.63e-41
EggNOG OGsCOG1196@1|root,KOG0250@2759|Eukaryota
EC3.6.4.13
Descriptiondouble-strand break repair via homologous recombination
Cds size354
COG categoryD
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185940.727987-CDS-P-wetherbeei_contig12180:99..1591683185940.727987-CDS-P-wetherbeei_contig12180:99..159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12180 100..159 +
1683185940.7381144-CDS-P-wetherbeei_contig12180:513..6541683185940.7381144-CDS-P-wetherbeei_contig12180:513..654Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12180 514..654 +
1683185940.753206-CDS-P-wetherbeei_contig12180:1100..12531683185940.753206-CDS-P-wetherbeei_contig12180:1100..1253Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12180 1101..1253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12180.1.1prot_P-wetherbeei_contig12180.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12180 100..1253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12180.1.1

>prot_P-wetherbeei_contig12180.1.1 ID=prot_P-wetherbeei_contig12180.1.1|Name=mRNA_P-wetherbeei_contig12180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
GDALVQVTLLNSDDGFEYDKYGDSITVRRTIKRAGGGGKLELIGEGGEVL
SRDRKDLEKMLDHLNIQVDNPCAVLDQENAKKFLQGSERDKYHFFMKATD
LDRIIRDSQETRRQIDAM
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mRNA from alignment at P-wetherbeei_contig12180:100..1253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12180.1.1 ID=mRNA_P-wetherbeei_contig12180.1.1|Name=mRNA_P-wetherbeei_contig12180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1154bp|location=Sequence derived from alignment at P-wetherbeei_contig12180:100..1253+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGCGCTCGTGCAGGTGACGCTCCTCAACTCGGACGACGGCTTCGA
GTACGACAAGGTGAGTGTGATCGATCGACGGGTCCGGTCTCGCCCGCTCC
CTTTTTCGCGTCTTTTCCGTCGTCTTCTATTTGCCGAGTGCCGCCGAAGA
ATTCTCCCGGCCTGCTTTTGAGAGAAGCGGAAACGAGATGAGCGGGCTAT
CTTTTGTCCCCGCTTGTCCCCGGCAGGTGGTCTGGCGCCCTTGCCTCTAC
CAATCCGCTTCACCTCCCGTTGCCTTCTTTTTCCCGCCGTCCCTGCTGGC
TCTTATTTCAGTCAACGAATCGGTTCGTTTTCTCCGCCCTCCATGTTCCG
GCTCTCCCTCTTCGGCCTCTTTGTCCTCTGGCATTTCGTGGCTGTTCTTG
GCCGGTTTTCTCAGTACGGGGACAGCATCACGGTAAGGCGGACCATCAAG
CGGGCAGGCGGCGGCGGCAAGCTGGAGCTGATCGGCGAGGGCGGCGAGGT
GCTCAGCCGCGACCGCAAGGACCTCGAGAAGATGCTCGACCACCTCAACA
TCCAGGTAATATTTGAGTGACGGGCAATAATTGGCAGTAACGTCAGTACC
GTTCAGTAACGTCGATGGAGAAGAGTGCTCATGTGAAGAGTACGGATGTG
GTGGTGGGTTGCTGTAGGGTTCCATGCGGCGCGTCATGCTTCTGCATTTG
GAAAGTGTCTCTGATTCTTTTTCCTTATGTATTGTCCTCGCGCTTTCCCT
TTGGCTGTTGCAACGCCTCGCGGTTTTGGCGGCGGTGGCCGCCTGCCGGT
GACCGCTGCGCCTTCAATTGTGGTTGCGGACAAATGCGGCGGTGGCGGCG
GTGACATTGACGGTGGCACGCAATGGCCGCGGCGTCGGCTGGCCAACTCT
CCGCATTGACCGTGACGGCGATACTGGCGTTCGGGCGTTCGGCGCCCGAC
GGCTGCGGCGGCGGCGGCGGCGGTAAAACGACAAACCCCCGAGTCTTACA
GGTGGACAACCCGTGCGCCGTGCTGGACCAGGAGAACGCCAAAAAGTTCC
TGCAGGGCTCGGAGCGCGACAAGTACCACTTCTTCATGAAGGCGACGGAC
CTCGACCGCATCATCCGCGACAGCCAGGAAACGCGCCGCCAGATCGACGC
GATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12180:100..1253+

>mRNA_P-wetherbeei_contig12180.1.1 ID=mRNA_P-wetherbeei_contig12180.1.1|Name=mRNA_P-wetherbeei_contig12180.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig12180:100..1253+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGCGCTCGTGCAGGTGACGCTCCTCAACTCGGACGACGGCTTCGA
GTACGACAAGTACGGGGACAGCATCACGGTAAGGCGGACCATCAAGCGGG
CAGGCGGCGGCGGCAAGCTGGAGCTGATCGGCGAGGGCGGCGAGGTGCTC
AGCCGCGACCGCAAGGACCTCGAGAAGATGCTCGACCACCTCAACATCCA
GGTGGACAACCCGTGCGCCGTGCTGGACCAGGAGAACGCCAAAAAGTTCC
TGCAGGGCTCGGAGCGCGACAAGTACCACTTCTTCATGAAGGCGACGGAC
CTCGACCGCATCATCCGCGACAGCCAGGAAACGCGCCGCCAGATCGACGC
GATG
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