mRNA_P-wetherbeei_contig1218.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1218.3.1
Unique NamemRNA_P-wetherbeei_contig1218.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A3C0TWQ2_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWQ2_9PROT)

HSP 1 Score: 229 bits (583), Expect = 6.860e-75
Identity = 113/150 (75.33%), Postives = 134/150 (89.33%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            ML LTKKMR+ALEAVVDIAYNARP PVQSRE+T+RQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRI+VGEIIRV+G+ ++++    E+ S LG  VI+PLW+EMQ EMMRRFD++T+EDLC+RAD + + PEQ++QADF I
Sbjct:    1 MLLLTKKMRFALEAVVDIAYNARPEPVQSREITKRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRITVGEIIRVVGEVEEDNGAG-ESQSQLGAAVISPLWEEMQTEMMRRFDNVTIEDLCRRADASRIQPEQQRQADFTI 149          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A351T249_9PROT (Transcriptional regulator n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T249_9PROT)

HSP 1 Score: 224 bits (570), Expect = 6.780e-73
Identity = 113/150 (75.33%), Postives = 126/150 (84.00%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            M RLTKKMR+ALEAVVDIAYNARP PVQSRE+T+RQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRV+G  ++    + ET S LG  +I PLWDE+Q EMM R D+I+VEDLC RA    +APE R+ ADFNI
Sbjct:    1 MFRLTKKMRFALEAVVDIAYNARPHPVQSREITRRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVVGALENTPVAEAETCSPLGVQIIGPLWDEVQQEMMARLDAISVEDLCARARDVGIAPESRRPADFNI 150          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A2D4VLA2_9HYPH (Transcriptional regulator n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VLA2_9HYPH)

HSP 1 Score: 199 bits (506), Expect = 3.650e-63
Identity = 101/150 (67.33%), Postives = 122/150 (81.33%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            MLRL+KK   ALEAVVD+A NARP PVQS+E+TQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRI+ GE++RV+G  + +D   TE+ SAL Q VI PLW+E+QAE+M + D++T+EDLC++A+   V  E    ADF I
Sbjct:    1 MLRLSKKTWLALEAVVDVAINARPDPVQSKEITQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRITAGEVVRVVGAMEASDEPATESPSALSQRVIAPLWEEVQAEVMEKLDAVTIEDLCRKAEATGVGAET-PSADFTI 149          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A1Y5RSQ8_9PROT (HTH-type transcriptional regulator IscR n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5RSQ8_9PROT)

HSP 1 Score: 196 bits (499), Expect = 4.540e-62
Identity = 98/151 (64.90%), Postives = 124/151 (82.12%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETV-SALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            ML+L KK  +ALEAVVDIAYNARP PVQS+E+T+RQGIPQRYLEQVMQQLV A ILKGVRGPRGGYTLARERRRISVGEI+RV+    +++A+  E + SA+G+ V+ PLWDE++A+++RR D +T+E+LC+RA K  +  E R + DF I
Sbjct:    1 MLKLPKKTLFALEAVVDIAYNARPEPVQSKEITRRQGIPQRYLEQVMQQLVRAGILKGVRGPRGGYTLARERRRISVGEILRVVDGFAEDEADAREPLGSAIGREVVYPLWDELRADLVRRLDEVTLEELCRRAGKVGIRAENRNKLDFTI 151          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A317E8I3_9PROT (Transcriptional regulator n=4 Tax=Rhodospirillales TaxID=204441 RepID=A0A317E8I3_9PROT)

HSP 1 Score: 196 bits (498), Expect = 7.100e-62
Identity = 101/154 (65.58%), Postives = 121/154 (78.57%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDT----DDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            MLRL++KM +ALEAVVDIAYNARP PVQS+E+T+RQGIPQRYLEQVMQQLVHA +LKGVRGP+GGY LARERRRI+VGEIIRV+G      DD   E     S LG+ V+ PLW E+   +M + DSITVEDLC+RA+ A V  E R++ DF+I
Sbjct:    1 MLRLSRKMLFALEAVVDIAYNARPEPVQSKEITRRQGIPQRYLEQVMQQLVHAGVLKGVRGPKGGYRLARERRRITVGEIIRVVGAIESAEDDESGEGAPMTSDLGKKVVQPLWGELHDTIMAKLDSITVEDLCRRAESAGVHSEGRERMDFSI 154          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A1Y5ECU0_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5ECU0_9PROT)

HSP 1 Score: 190 bits (483), Expect = 1.200e-59
Identity = 95/150 (63.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            ML L KKM YALEAVVDIA+NARP PVQS+E+TQRQGIPQRYLEQVMQQLVHA ILKGVRGPRGGY LARERRRI+ G+I+RVIG  D+ + +     S +GQ V+ PLW + Q+ M+++ D +T+E+LC+RAD    +   R   DFNI
Sbjct:    1 MLHLPKKMLYALEAVVDIAFNARPNPVQSKEITQRQGIPQRYLEQVMQQLVHAGILKGVRGPRGGYRLARERRRITAGDIVRVIGAADEAEGQSQIFTSEIGQKVVGPLWVDAQSAMLKQLDMVTLEELCRRADADCQSDVSRSTNDFNI 150          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A2N3ELV1_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3ELV1_9PROT)

HSP 1 Score: 190 bits (482), Expect = 1.640e-59
Identity = 97/150 (64.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            MLRL+KK   ALEAVVDIA NARP PVQS+E+T+RQGIPQRYLEQVMQQLVHA ILKGVRGPRGGYTLARERRRI VGE++RV+G  + +D       S LG+ VI PLW ++Q E+M++ D IT+EDLC++A++A V    R  +DF I
Sbjct:    1 MLRLSKKTWLALEAVVDIAINARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVRGPRGGYTLARERRRIPVGEVVRVVGAMEASDEPANSVPSDLGERVIAPLWQDVQRELMKKLDGITIEDLCRKAEEAGVE-NSRSTSDFTI 149          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A7HZB9_PARL1 (Transcriptional regulator, BadM/Rrf2 family n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HZB9_PARL1)

HSP 1 Score: 186 bits (472), Expect = 5.460e-58
Identity = 95/150 (63.33%), Postives = 117/150 (78.00%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            MLRL+KK   ALEAVVD+A NARP PVQS+E+T+RQGIPQRYLEQVMQQLVHA ILKGVRGPRGGYTLARERRRI VGE++RV+G  + +D       S LG+ VI PLW E+Q E+M + D+IT+ED+C++A++  V    +  ADF I
Sbjct:    1 MLRLSKKTWLALEAVVDVAINARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVRGPRGGYTLARERRRIPVGEVVRVVGAMEASDEPTATAPSELGERVIAPLWQEVQRELMAKLDNITIEDMCRKAEEVGVGTS-KPTADFII 149          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A6N6VSK9_9HYPH (Rrf2 family transcriptional regulator n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VSK9_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 5.460e-58
Identity = 96/150 (64.00%), Postives = 117/150 (78.00%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            MLRL+KK   ALEAVVD+A NARP PVQS+E+T+RQGIPQRYLEQVMQQLVHA ILKGVRGPRGGY LARERRRI+VGE++RV+G  +  D   T   S LG+ VI PLW+E+Q ++M R + IT++DLC+RA+ A  A +    ADF I
Sbjct:    1 MLRLSKKTWLALEAVVDVAINARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVRGPRGGYRLARERRRITVGEVVRVVGAMESADDPVTTGPSELGERVIAPLWEEVQRDLMERLEKITIDDLCRRAESASAAIDT-PAADFTI 149          
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Match: A0A2E5BT65_9HYPH (Transcriptional regulator n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BT65_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 5.460e-58
Identity = 95/150 (63.33%), Postives = 118/150 (78.67%), Query Frame = 1
Query:    1 MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQLVHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSALGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI 450
            M+RL+KK   ALEAV+D+A NARP PVQS+++T+RQGIPQRYLEQVMQQLVHA ILKGVRGP+GGY LARERRRISVG+I+R++G  +  + E   T SALG+ VI P+WD +Q+EMM R D++TVEDLC  A K     E + +ADF I
Sbjct:    1 MVRLSKKTLLALEAVLDVAVNARPDPVQSKDITRRQGIPQRYLEQVMQQLVHAGILKGVRGPKGGYRLARERRRISVGDIVRIVGAMEIAE-EPRSTPSALGEKVIEPMWDAIQSEMMLRLDAVTVEDLCLEAAKLGADGEDKPEADFTI 149          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1218.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TWQ2_9PROT6.860e-7575.33Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A0A351T249_9PROT6.780e-7375.33Transcriptional regulator n=4 Tax=Alphaproteobacte... [more]
A0A2D4VLA2_9HYPH3.650e-6367.33Transcriptional regulator n=2 Tax=Parvibaculum Tax... [more]
A0A1Y5RSQ8_9PROT4.540e-6264.90HTH-type transcriptional regulator IscR n=1 Tax=Oc... [more]
A0A317E8I3_9PROT7.100e-6265.58Transcriptional regulator n=4 Tax=Rhodospirillales... [more]
A0A1Y5ECU0_9PROT1.200e-5963.33Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A0A2N3ELV1_9PROT1.640e-5964.67Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A7HZB9_PARL15.460e-5863.33Transcriptional regulator, BadM/Rrf2 family n=7 Ta... [more]
A0A6N6VSK9_9HYPH5.460e-5864.00Rrf2 family transcriptional regulator n=1 Tax=Parv... [more]
A0A2E5BT65_9HYPH5.460e-5863.33Transcriptional regulator n=1 Tax=Rhodobiaceae bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1218contigP-wetherbeei_contig1218:2386..2838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog402881.Plav_3654
PFAMsRrf2
Model size453
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.95e-59
EggNOG OGsCOG1959@1|root,COG1959@2|Bacteria,1RIJ8@1224|Proteobacteria,2U744@28211|Alphaproteobacteria
Descriptiontranscriptional regulator
Cds size453
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185940.537331-CDS-P-wetherbeei_contig1218:2385..28381683185940.537331-CDS-P-wetherbeei_contig1218:2385..2838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1218 2386..2838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1218.3.1prot_P-wetherbeei_contig1218.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1218 2386..2838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1218.3.1

>prot_P-wetherbeei_contig1218.3.1 ID=prot_P-wetherbeei_contig1218.3.1|Name=mRNA_P-wetherbeei_contig1218.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MLRLTKKMRYALEAVVDIAYNARPAPVQSREVTQRQGIPQRYLEQVMQQL
VHANILKGVRGPRGGYTLARERRRISVGEIIRVIGDTDDNDAEKTETVSA
LGQTVINPLWDEMQAEMMRRFDSITVEDLCKRADKAHVAPEQRKQADFNI
*
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mRNA from alignment at P-wetherbeei_contig1218:2386..2838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1218.3.1 ID=mRNA_P-wetherbeei_contig1218.3.1|Name=mRNA_P-wetherbeei_contig1218.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1218:2386..2838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGGCTGACAAAAAAAATGCGTTATGCGCTGGAGGCCGTTGTGGA TATTGCCTACAATGCCAGGCCGGCGCCGGTGCAATCGCGCGAAGTTACCC AGCGTCAGGGTATTCCGCAACGTTATCTGGAACAGGTAATGCAGCAACTG GTGCATGCCAATATTCTGAAAGGCGTGCGCGGCCCGCGCGGGGGCTATAC GCTGGCGCGGGAACGGCGGCGGATCAGCGTTGGCGAAATCATCCGGGTGA TCGGCGACACAGATGACAATGATGCCGAAAAGACCGAAACTGTCTCTGCG CTGGGTCAAACGGTCATCAATCCATTGTGGGATGAGATGCAGGCCGAAAT GATGCGCCGTTTTGACAGTATCACTGTGGAGGATCTGTGCAAGCGCGCGG ACAAGGCGCATGTCGCGCCCGAACAGCGCAAACAGGCAGACTTCAACATT TAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1218:2386..2838+

>mRNA_P-wetherbeei_contig1218.3.1 ID=mRNA_P-wetherbeei_contig1218.3.1|Name=mRNA_P-wetherbeei_contig1218.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig1218:2386..2838+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCGGCTGACAAAAAAAATGCGTTATGCGCTGGAGGCCGTTGTGGA
TATTGCCTACAATGCCAGGCCGGCGCCGGTGCAATCGCGCGAAGTTACCC
AGCGTCAGGGTATTCCGCAACGTTATCTGGAACAGGTAATGCAGCAACTG
GTGCATGCCAATATTCTGAAAGGCGTGCGCGGCCCGCGCGGGGGCTATAC
GCTGGCGCGGGAACGGCGGCGGATCAGCGTTGGCGAAATCATCCGGGTGA
TCGGCGACACAGATGACAATGATGCCGAAAAGACCGAAACTGTCTCTGCG
CTGGGTCAAACGGTCATCAATCCATTGTGGGATGAGATGCAGGCCGAAAT
GATGCGCCGTTTTGACAGTATCACTGTGGAGGATCTGTGCAAGCGCGCGG
ACAAGGCGCATGTCGCGCCCGAACAGCGCAAACAGGCAGACTTCAACATT
TAA
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