mRNA_P-wetherbeei_contig12179.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12179.1.1
Unique NamemRNA_P-wetherbeei_contig12179.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12179.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12179contigP-wetherbeei_contig12179:811..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1222
Hectar predicted targeting categoryother localisation
Exons1
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185940.398919-UTR-P-wetherbeei_contig12179:810..12141683185940.398919-UTR-P-wetherbeei_contig12179:810..1214Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12179 811..1214 +
1683185940.4167957-UTR-P-wetherbeei_contig12179:1937..20321683185940.4167957-UTR-P-wetherbeei_contig12179:1937..2032Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12179 1938..2032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185940.4094443-CDS-P-wetherbeei_contig12179:1214..19371683185940.4094443-CDS-P-wetherbeei_contig12179:1214..1937Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12179 1215..1937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12179.1.1prot_P-wetherbeei_contig12179.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12179 1215..1937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12179.1.1

>prot_P-wetherbeei_contig12179.1.1 ID=prot_P-wetherbeei_contig12179.1.1|Name=mRNA_P-wetherbeei_contig12179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=241bp
MSASRLAGQHNGGSGILLGCADLHAGGVALGEVVMAARLAAAAASKLSVV
WAVAESIFCGFFKYRRMQAVVAGKERDAVIPVPAVKLDLLHALAGFLSHG
AAPPACGDVVEPVGCGGGWWGTGDFGATNAPRLTGTKAVDTETEASETYR
VRGESNSKPLRCRKPLRCREKRVPAFIRLRAAVSRALLAVRAGGGRTWQG
RRRRRQPRHEAASVEGRIRIWGGSCRPLHRPGALSAAVRR*
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mRNA from alignment at P-wetherbeei_contig12179:811..2032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12179.1.1 ID=mRNA_P-wetherbeei_contig12179.1.1|Name=mRNA_P-wetherbeei_contig12179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1222bp|location=Sequence derived from alignment at P-wetherbeei_contig12179:811..2032+ (Phaeothamnion wetherbeei SAG_119_79)
AAGTCGGATCCTGGGGCACTGACTGCAGCGGCTGGAGGCAGGCAGCATCA
AGGCGACGACGCCGTCGGCCGCAAAACCGATAGAGAAGTTAAGCCGCGCC
GCAGCAATCCCCAGCGGCGCGATGCTGGGTCCCTTTTACCACCCCATACG
AGGGCCGGCCGGTAACCGCGCGGCTGAGGAGCTTCTCGACGACGACGCCA
CGGACCTTATCTTTGCGGCCTGCCACCGGATCCGCGTTGTCCCGGCGGCC
GCTCTTTCTCCACGCCTGGCCGGCGGCGGCGCGAAGCCGACCAGCTAGGA
GGTCCTGCTTCTTTCGTAGTGTTGAGGGCGTTTGGGGTACGGGGGCGGTT
GATGAAGTGTTTGACGGAAAGCGAAGCTTGGCAGAGAAGGGGAGCGCGTG
GCAGATGTCGGCTAGCCGACTGGCCGGACAGCATAACGGCGGGAGCGGAA
TCCTTTTGGGTTGCGCCGACCTGCACGCGGGCGGGGTGGCGCTAGGGGAA
GTCGTTATGGCGGCCCGGCTCGCAGCCGCCGCGGCGTCCAAGCTTTCGGT
AGTGTGGGCGGTTGCAGAAAGCATTTTCTGCGGATTTTTTAAATATCGCC
GTATGCAAGCCGTGGTGGCAGGCAAGGAGCGCGATGCAGTCATCCCGGTG
CCAGCGGTTAAGCTGGATCTGCTTCACGCCCTCGCCGGCTTTCTCTCACA
CGGCGCGGCGCCGCCAGCGTGCGGGGACGTTGTGGAACCAGTAGGTTGTG
GAGGTGGCTGGTGGGGCACCGGCGATTTTGGTGCGACCAATGCCCCTCGC
TTAACAGGGACGAAGGCCGTGGACACAGAGACGGAGGCGTCAGAGACCTA
TCGTGTTAGAGGCGAGTCGAACAGTAAGCCTTTGCGCTGCCGGAAGCCTT
TGCGCTGCCGTGAAAAGCGTGTTCCGGCTTTCATAAGACTTCGTGCTGCC
GTTAGCCGGGCGCTTTTGGCGGTGCGAGCGGGCGGGGGAAGAACTTGGCA
GGGTCGGCGGCGGCGGCGACAGCCACGGCACGAGGCAGCCTCGGTGGAGG
GAAGGATTAGGATTTGGGGTGGTAGCTGCAGACCGCTCCATCGGCCAGGC
GCATTGTCGGCGGCCGTGCGCCGGTAGTAGCGGTCGCAGTGGCGGCAGCG
GAGGGCCCTCGCCGCAGTGTCGCCGGCGCTGGCGCTGCTTGTCAGGAATC
CGACAGAGCCTCACGTTAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12179:811..2032+

>mRNA_P-wetherbeei_contig12179.1.1 ID=mRNA_P-wetherbeei_contig12179.1.1|Name=mRNA_P-wetherbeei_contig12179.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=723bp|location=Sequence derived from alignment at P-wetherbeei_contig12179:811..2032+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCTAGCCGACTGGCCGGACAGCATAACGGCGGGAGCGGAATCCT
TTTGGGTTGCGCCGACCTGCACGCGGGCGGGGTGGCGCTAGGGGAAGTCG
TTATGGCGGCCCGGCTCGCAGCCGCCGCGGCGTCCAAGCTTTCGGTAGTG
TGGGCGGTTGCAGAAAGCATTTTCTGCGGATTTTTTAAATATCGCCGTAT
GCAAGCCGTGGTGGCAGGCAAGGAGCGCGATGCAGTCATCCCGGTGCCAG
CGGTTAAGCTGGATCTGCTTCACGCCCTCGCCGGCTTTCTCTCACACGGC
GCGGCGCCGCCAGCGTGCGGGGACGTTGTGGAACCAGTAGGTTGTGGAGG
TGGCTGGTGGGGCACCGGCGATTTTGGTGCGACCAATGCCCCTCGCTTAA
CAGGGACGAAGGCCGTGGACACAGAGACGGAGGCGTCAGAGACCTATCGT
GTTAGAGGCGAGTCGAACAGTAAGCCTTTGCGCTGCCGGAAGCCTTTGCG
CTGCCGTGAAAAGCGTGTTCCGGCTTTCATAAGACTTCGTGCTGCCGTTA
GCCGGGCGCTTTTGGCGGTGCGAGCGGGCGGGGGAAGAACTTGGCAGGGT
CGGCGGCGGCGGCGACAGCCACGGCACGAGGCAGCCTCGGTGGAGGGAAG
GATTAGGATTTGGGGTGGTAGCTGCAGACCGCTCCATCGGCCAGGCGCAT
TGTCGGCGGCCGTGCGCCGGTAG
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