mRNA_P-wetherbeei_contig12166.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12166.1.1
Unique NamemRNA_P-wetherbeei_contig12166.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: D8LRD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.280e-31
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 1
Query:    1 PCPAGTSSWRYGLRAAAECWPCAPGFFCPEA-----SIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGSNDGTTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFAC 357
            PCPAGT  W+YG  +   C PC  G++CP       S +A    CG+  V+CP G+  P+PV AGFY+VGG ++GTTR +QV CE GY+C    R  C  G +GSS GL    C+G CP G AC
Sbjct:  835 PCPAGTFQWKYGESSRGSCLPCKAGYYCPPGESASPSRDATLVACGNPTVFCPEGSVEPVPVRAGFYSVGGGSEGTTRVSQVLCEAGYYCQDAARKLCPAGTYGSSAGLRDEGCTGVCPPGAAC 958          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A835Z6D3_9STRA (TNFR-Cys domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.590e-30
Identity = 64/143 (44.76%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    4 CPAGTSSWRYGLRAAAECWPCAPGFFCPE----ASIEARKHPCGHAAVYCPGGTALPLPVM---------------AGFYTVG----GSNDG-TTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACP 360
            CP GT  WRYG    ++C PC  G+FCP      +++     CG   VYCP G++ PLPV                 G+Y+ G    G +DG  TR+AQ RCE GY+C GGIR  C  G +G++TGL TP CSG+CPAG ACP
Sbjct:  363 CPPGTYQWRYGAHDVSDCAPCPAGYFCPSYPAPPTVDPAPFECGGPDVYCPEGSSEPLPVKRRAVSQVPEMLHGCGVGYYSTGVAREGLDDGGATRSAQARCEPGYYCRGGIRTECPAGTYGATTGLNTPRCSGWCPAGHACP 505          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A482SCJ5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCJ5_9ARCH)

HSP 1 Score: 112 bits (280), Expect = 1.400e-28
Identity = 53/128 (41.41%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 PCPAGTSSWRYGLRAAAECWPCAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGSNDGTTRTAQVR-----CERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACPGAT 369
            PCPAG    R GL ++     CA G+FC E ++     PCG+++VYCP G+A PLPV  G+Y++  + +    +  +R     C  GY+C  G++  C  GRFG + GL +P+CSG CP GF+CP A+
Sbjct:   64 PCPAGFYGDRPGLNSSMCSGQCAAGYFCLEGTVHYSSRPCGNSSVYCPTGSAKPLPVPPGYYSIDINGEDVVTSISLRSSIAICPVGYYCQQGVKSACPGGRFGVTLGLISPNCSGICPGGFSCPPAS 191          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: H3HDW3_PHYRM (Cellulose synthase 3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=H3HDW3_PHYRM)

HSP 1 Score: 113 bits (283), Expect = 9.520e-27
Identity = 60/136 (44.12%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    4 CPAGTSSWRYGLRAAAECWPCAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGSN-----------------DGTTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACP 360
            CPAGT     GL +AA    C  G++CP  S    + PCG   V+CP G+ALP+ V +G+YTVG                    D TTR AQ RCE G++C  G R+ C  G FG+  GLTT DCSG C AG+ CP
Sbjct: 1242 CPAGTFGSVSGLASAACSGLCTAGYYCPRGSTSDTQLPCGSVNVFCPPGSALPVQVASGYYTVGDQKATKDSLTEDALAAERDKDRTTRVAQRRCEPGHYCVDGERHACPAGTFGNKAGLTTTDCSGLCAAGYYCP 1377          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: K3WNJ6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNJ6_GLOUD)

HSP 1 Score: 107 bits (268), Expect = 9.700e-25
Identity = 56/129 (43.41%), Postives = 70/129 (54.26%), Query Frame = 1
Query:    4 CPAGTSSWRYGLRAAAECWPCAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGS----------NDGTTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACP 360
            CP GT     GL        CA G++C   S  AR+  CG   VYCP G+A P+PV  G YT+G +           D TTR AQ+RCE G++C  G+R+PC  G +G + GLTT  CSG C  G  CP
Sbjct:  284 CPGGTYGDVEGLTTPLCAGACAEGYYCERGSTRARQTECGGPHVYCPRGSATPVPVSPGHYTIGATLSRPHEDQDYADATTRIAQMRCEPGHYCIEGVRFPCPGGTYGDAFGLTTAACSGQCVEGHYCP 412          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A5D6XLS4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLS4_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.780e-24
Identity = 60/132 (45.45%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    4 CPAGTSSWRYGLRAAAECWPCAPGFFCPE----ASIEARKHPCGHAAVYCPGGTA-LPLPVMAGFYTVG---GSNDG--TTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACPGAT 369
            CP GT     GLR A     CA G++CP      S+ A +  CG + VYCP GT   P+ V  GFYTVG   GS D   TTRT Q  C +G++C  G+   C  G +G   GL+ P C+G+CPAG+ACP AT
Sbjct:  705 CPEGTFGATSGLRDATCSGLCAAGYYCPSYPRLPSVRATQLECGSSTVYCPVGTGNRPMAVRRGFYTVGAGDGSGDAKNTTRTGQTVCPKGFYCRRGVMIRCPDGTYGDDEGLSDPYCTGWCPAGYACPTAT 836          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A485KQA2_9STRA (Aste57867_10202 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQA2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.180e-22
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    4 CPAGTSSWRYGLRAAAECWPCAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGSNDGTTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACP 360
            CPAGT      L ++     C  G+FCP  S     HPC +A  YCP G++ P  V AG+ TV  + DG  R  Q++C  G +C  G+ + C  G +GS+TGLTTP CSG C  G  CP
Sbjct:  332 CPAGTYGMTPALSSSTCTANCPAGYFCPIGSATYANHPCLNATTYCPAGSSSPTGVSAGYSTVL-ATDGRLRMDQIQCPTGSYCTHGVAHSCPRGTYGSTTGLTTPACSGPCAPGHICP 449          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A7S1UIY9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIY9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.830e-22
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   64 CAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVG---------GSNDGTTRTAQVRCERGYFCDGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFACP 360
            C  G++CP  S+   +  CG    +CP G+  P PV  G+YT+G            D   R AQ+ CE G+FC GG++Y C PG +G + GL T +CSG C  GF CP
Sbjct:  587 CEAGWYCPVGSVNKTQEVCGGPGFFCPAGSGTPTPVSTGYYTIGRYSLAGELQSDRDEKIRDAQLPCEPGFFCFGGVKYACPPGTYGLTYGLATVECSGLCTPGFYCP 694          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A835YKX8_9STRA (INTRADIOL_DIOXYGENAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.280e-21
Identity = 54/124 (43.55%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 PCPAGTSSWRYGLRA----AAECWPCAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGSNDGTTRTAQVRCERGYFCDG-GIRYPCAPGRFGSSTGLTTPDCSGFCPAGFAC 357
            PCPAG      GL +    A+    C  G+FCP  S  A++  CG   VYCP G+A PLPV AG+++ GG+ +  TRT +  C  G++C G G    C  G +G+ TGLTT  CSG CP G  C
Sbjct:  936 PCPAGFPGTGPGLTSPQCSASGASACVAGYFCPRGSHSAKQEECGGDGVYCPAGSAAPLPVGAGWHSTGGTAN--TRTGREICPVGHYCTGNGSARTCPAGVYGADTGLTTAACSGACPPGLFC 1057          
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Match: A0A7S3M821_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M821_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-20
Identity = 59/138 (42.75%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    4 CPAGTSSWRYGLRAA---AECWP-CAPGFFCPEASIEARKHPCGHAAVYCPGGTALPLPVMAGFYTVGGSN----------DG-----TTRTAQVRCERGYFC-DGGIRYPCAPGRFGSSTGLTTPDCSGFCPAGFAC 357
            CPAG    RYGL      A C   C  GF+CPE SI  ++  C  AA YCP  +  P+ V  G+YTVG             DG     T RT Q  CE+GY+C   GI+  C  GR+GS+ GL++P CSG+C AG+ C
Sbjct:   22 CPAG----RYGLHLRVFNASCTGVCTAGFYCPEGSIIDKQVRCPDAASYCPTASPAPVLVSPGYYTVGHETSNYTYDIINYDGNAFAETARTGQAICEKGYYCLSDGIKRKCPVGRYGSTRGLSSPSCSGYCAAGYYC 155          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12166.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRD9_ECTSI1.280e-3147.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6D3_9STRA1.590e-3044.76TNFR-Cys domain-containing protein n=1 Tax=Tribone... [more]
A0A482SCJ5_9ARCH1.400e-2841.41Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
H3HDW3_PHYRM9.520e-2744.12Cellulose synthase 3 n=2 Tax=Peronosporaceae TaxID... [more]
K3WNJ6_GLOUD9.700e-2543.41Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XLS4_9STRA1.780e-2445.45Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485KQA2_9STRA4.180e-2242.86Aste57867_10202 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1UIY9_9STRA8.830e-2240.74Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YKX8_9STRA4.280e-2143.55INTRADIOL_DIOXYGENAS domain-containing protein n=1... [more]
A0A7S3M821_9STRA1.300e-2042.75Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12166contigP-wetherbeei_contig12166:1351..1957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008608712.1
Model size369
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.62e-30
EggNOG OGs28PP5@1|root,2QWBD@2759|Eukaryota
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.705353-CDS-P-wetherbeei_contig12166:1350..14911683185939.705353-CDS-P-wetherbeei_contig12166:1350..1491Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12166 1351..1491 -
1683185939.7219071-CDS-P-wetherbeei_contig12166:1729..19571683185939.7219071-CDS-P-wetherbeei_contig12166:1729..1957Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12166 1730..1957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12166.1.1prot_P-wetherbeei_contig12166.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12166 1351..1957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12166.1.1

>prot_P-wetherbeei_contig12166.1.1 ID=prot_P-wetherbeei_contig12166.1.1|Name=mRNA_P-wetherbeei_contig12166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
PCPAGTSSWRYGLRAAAECWPCAPGFFCPEASIEARKHPCGHAAVYCPGG
TALPLPVMAGFYTVGGSNDGTTRTAQVRCERGYFCDGGIRYPCAPGRFGS
STGLTTPDCSGFCPAGFACPGAT
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mRNA from alignment at P-wetherbeei_contig12166:1351..1957-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12166.1.1 ID=mRNA_P-wetherbeei_contig12166.1.1|Name=mRNA_P-wetherbeei_contig12166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=607bp|location=Sequence derived from alignment at P-wetherbeei_contig12166:1351..1957- (Phaeothamnion wetherbeei SAG_119_79)
CCTTGCCCTGCCGGCACCAGCAGTTGGAGATACGGGCTGCGGGCAGCGGC AGAGTGTTGGCCGTGCGCTCCGGGCTTCTTCTGCCCGGAAGCAAGCATCG AGGCGAGGAAGCATCCGTGCGGTCATGCTGCGGTGTACTGCCCGGGCGGG ACGGCGCTGCCGCTTCCAGTGATGGCGGGTTTTTACACCGTGGGCGGCAG CAATGACGGAACCACGAGGACTGCGCAGGTGAAGAACGCCGAGGGAATTA CAGTGGCTGGCCTGGAATCGATCACCTTTGGGAAGCCTTAACTTTCGCTT GCTGCCCTTTTAGACCGTCCTTTTGGCCGCAATAAAAGACGTGCACTCTG CAAAGGTAGGCGAGACATTGTGCGCGTTTGTTTCTACGCCGTCCTGCTTA GACTGCCTCCACGGCTCCCCCACATGCCCGCCTTCCCTGCTCTCCTTCTG CACATCGAGCCAACAGGTAAGATGCGAAAGAGGTTATTTTTGCGATGGCG GAATACGCTACCCTTGCGCACCAGGTCGGTTCGGCAGCAGCACCGGCCTC ACCACGCCCGACTGCAGCGGCTTTTGTCCTGCCGGCTTCGCCTGCCCCGG CGCGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12166:1351..1957-

>mRNA_P-wetherbeei_contig12166.1.1 ID=mRNA_P-wetherbeei_contig12166.1.1|Name=mRNA_P-wetherbeei_contig12166.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig12166:1351..1957- (Phaeothamnion wetherbeei SAG_119_79)
CCTTGCCCTGCCGGCACCAGCAGTTGGAGATACGGGCTGCGGGCAGCGGC
AGAGTGTTGGCCGTGCGCTCCGGGCTTCTTCTGCCCGGAAGCAAGCATCG
AGGCGAGGAAGCATCCGTGCGGTCATGCTGCGGTGTACTGCCCGGGCGGG
ACGGCGCTGCCGCTTCCAGTGATGGCGGGTTTTTACACCGTGGGCGGCAG
CAATGACGGAACCACGAGGACTGCGCAGGTAAGATGCGAAAGAGGTTATT
TTTGCGATGGCGGAATACGCTACCCTTGCGCACCAGGTCGGTTCGGCAGC
AGCACCGGCCTCACCACGCCCGACTGCAGCGGCTTTTGTCCTGCCGGCTT
CGCCTGCCCCGGCGCGACG
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