mRNA_P-wetherbeei_contig12165.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12165.1.1
Unique NamemRNA_P-wetherbeei_contig12165.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12165.1.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.910e-6
Identity = 67/225 (29.78%), Postives = 102/225 (45.33%), Query Frame = 3 
Query:  318 GYALRVHGRLGDPSPALLYRMESGEIAIIRSARDLEQGDALGPIFFSLGILAATRVFRASAAADGCALVGFLNDLVLATGLPDSAELSLALVAAVQRLRADPSRVGLTLNMTKSAALCSGDA----GARRFSPGTTIGLTAPGVPGAPVGIRFVGVPIGTEEFVRT-ATGIEEAGDIDRPIYALQYLPQALVASVITRSSLAPQANFEARASSPFLAADIFRHFD 977
            GY  R +  +  P+ A+ Y M+SGE   +     ++QGD +GP  FSL ++      +      G A   +++D+ L   L D  E S   V A+  L  + + VG+ +N  KS+AL           RR   G  +GLT  G      GI  VGVPIGT+ +VR  A  +   G  ++    L  +    VA++IT  SL  ++ +  R   P L  +     D
Sbjct:  707 GYIARCYDEI--PATAV-YEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITL--HLKDLTEES---VQAMTDLVDELAEVGIVVNRAKSSALPPPGHMITDQQRRLLEG--VGLTVAGE-----GITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLD 916
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12165.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE2.910e-629.78Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12165contigP-wetherbeei_contig12165:392..2034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1643
Hectar predicted targeting categoryother localisation
Exons1
Cds size1395
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.6627545-UTR-P-wetherbeei_contig12165:391..6391683185939.6627545-UTR-P-wetherbeei_contig12165:391..639Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12165 392..639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.6724253-CDS-P-wetherbeei_contig12165:639..20341683185939.6724253-CDS-P-wetherbeei_contig12165:639..2034Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12165 640..2034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12165.1.1prot_P-wetherbeei_contig12165.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12165 640..2034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12165.1.1

>prot_P-wetherbeei_contig12165.1.1 ID=prot_P-wetherbeei_contig12165.1.1|Name=mRNA_P-wetherbeei_contig12165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=465bp
MQNMRPLLPPSRPSPRSSSHRIGGYALRVHGRLGDPSPALLYRMESGEIA
IIRSARDLEQGDALGPIFFSLGILAATRVFRASAAADGCALVGFLNDLVL
ATGLPDSAELSLALVAAVQRLRADPSRVGLTLNMTKSAALCSGDAGARRF
SPGTTIGLTAPGVPGAPVGIRFVGVPIGTEEFVRTATGIEEAGDIDRPIY
ALQYLPQALVASVITRSSLAPQANFEARASSPFLAADIFRHFDAKIAYMA
TSLASLAPPEPLPGVDRDDVLCRHPGDGGDAYSGGGCGGSSDGSDDGSGG
GSSGSGEGDDDGAGRGGSGNDGGGGRGAVEAGAAAAGAAATAVAVAAVIV
GATAVAAETAVPAASCGRGICSCSLTSGLTRISLACRFQRHSSRPRGLDG
GGLLRPASHGGGVDYHGGPVGTSRPKVLGPVCGRQQPTRGRPKTWWVRCQ
SIGQPVLPNQWRRRL
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mRNA from alignment at P-wetherbeei_contig12165:392..2034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12165.1.1 ID=mRNA_P-wetherbeei_contig12165.1.1|Name=mRNA_P-wetherbeei_contig12165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1643bp|location=Sequence derived from alignment at P-wetherbeei_contig12165:392..2034+ (Phaeothamnion wetherbeei SAG_119_79)
CATTATGTGAAGCATCGTAACAGCGACCAGCAGAATTGCTTGCAAACGAA
CTGTTTATTGGCCAGGTCCAGTCGGCGACAGTGCCGATGAAAATCGCTCC
ACCGGCGTAACGGGCGAAATTCCTCGCGAAGCTTGAACTGTCCCCATCGA
ATTGTGACTGTGAGTACACGGGCAGTGCTCGCGCTGTTGTTCGGCCGTGA
AACTGCTGCTTGTGATGCGCACGTCTTCACCGGAAACGGCGCCGCCGTAT
GCAGAACATGAGGCCCCTCTTACCTCCCTCCCGGCCGTCGCCAAGGAGCT
CCAGCCACCGCATCGGCGGCTATGCCCTTCGAGTCCATGGCCGCCTTGGT
GACCCGTCCCCGGCGCTGCTGTATCGGATGGAGTCTGGCGAGATTGCGAT
CATCCGGTCTGCCCGTGACCTTGAGCAGGGCGACGCGCTGGGTCCCATCT
TCTTCAGCCTCGGAATCCTGGCAGCGACGCGGGTGTTCCGCGCCTCCGCC
GCTGCCGACGGATGTGCCCTCGTCGGCTTCCTCAACGATTTGGTGCTGGC
TACGGGGCTGCCGGACTCGGCGGAGCTCTCGCTGGCCCTTGTCGCGGCTG
TCCAGCGGCTGCGCGCCGACCCCAGCCGGGTCGGGCTTACGCTCAACATG
ACCAAGTCGGCGGCCCTCTGCTCCGGCGATGCTGGGGCTCGGCGCTTCTC
GCCGGGTACAACGATCGGTCTGACGGCGCCCGGCGTGCCGGGGGCGCCGG
TGGGCATCCGCTTTGTTGGCGTCCCCATCGGCACAGAGGAGTTCGTCCGG
ACGGCGACTGGCATCGAGGAGGCCGGCGACATCGACCGCCCCATCTATGC
GCTGCAGTATCTTCCGCAGGCGCTAGTGGCCTCTGTCATCACGCGGTCCT
CGCTCGCTCCCCAGGCCAACTTCGAAGCCCGGGCGTCCTCGCCCTTCCTC
GCCGCCGACATTTTCCGCCATTTTGACGCCAAGATCGCCTATATGGCGAC
CTCCCTCGCCTCCCTCGCCCCGCCGGAGCCGCTTCCCGGCGTTGACCGGG
ACGATGTGCTCTGCCGCCACCCTGGTGACGGCGGTGACGCCTACAGCGGC
GGCGGCTGCGGCGGCAGCAGCGATGGCAGCGACGACGGCAGCGGCGGTGG
CAGCAGCGGCAGCGGTGAAGGTGATGATGATGGTGCCGGCAGGGGCGGCA
GCGGCAACGATGGCGGCGGCGGCAGGGGCGCGGTGGAGGCAGGGGCGGCG
GCGGCAGGGGCGGCGGCGACTGCAGTGGCGGTGGCAGCTGTAATTGTGGG
GGCGACGGCGGTGGCAGCGGAAACGGCAGTGCCGGCGGCCTCATGCGGTC
GTGGGATCTGCAGTTGTTCTCTGACTTCCGGCTTGACCCGGATAAGTCTC
GCTTGCCGTTTTCAGCGGCACAGCTCTCGCCCGCGAGGCCTTGACGGAGG
AGGCCTGCTTCGGCCCGCTTCCCATGGCGGCGGCGTCGACTACCACGGCG
GCCCAGTTGGGACGAGTCGTCCCAAAGTCCTCGGTCCTGTTTGCGGCAGG
CAACAACCAACCAGAGGACGACCGAAGACGTGGTGGGTGCGATGTCAGAG
TATCGGTCAGCCAGTCTTGCCCAACCAGTGGCGGCGGCGGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12165:392..2034+

>mRNA_P-wetherbeei_contig12165.1.1 ID=mRNA_P-wetherbeei_contig12165.1.1|Name=mRNA_P-wetherbeei_contig12165.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1395bp|location=Sequence derived from alignment at P-wetherbeei_contig12165:392..2034+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAACATGAGGCCCCTCTTACCTCCCTCCCGGCCGTCGCCAAGGAG
CTCCAGCCACCGCATCGGCGGCTATGCCCTTCGAGTCCATGGCCGCCTTG
GTGACCCGTCCCCGGCGCTGCTGTATCGGATGGAGTCTGGCGAGATTGCG
ATCATCCGGTCTGCCCGTGACCTTGAGCAGGGCGACGCGCTGGGTCCCAT
CTTCTTCAGCCTCGGAATCCTGGCAGCGACGCGGGTGTTCCGCGCCTCCG
CCGCTGCCGACGGATGTGCCCTCGTCGGCTTCCTCAACGATTTGGTGCTG
GCTACGGGGCTGCCGGACTCGGCGGAGCTCTCGCTGGCCCTTGTCGCGGC
TGTCCAGCGGCTGCGCGCCGACCCCAGCCGGGTCGGGCTTACGCTCAACA
TGACCAAGTCGGCGGCCCTCTGCTCCGGCGATGCTGGGGCTCGGCGCTTC
TCGCCGGGTACAACGATCGGTCTGACGGCGCCCGGCGTGCCGGGGGCGCC
GGTGGGCATCCGCTTTGTTGGCGTCCCCATCGGCACAGAGGAGTTCGTCC
GGACGGCGACTGGCATCGAGGAGGCCGGCGACATCGACCGCCCCATCTAT
GCGCTGCAGTATCTTCCGCAGGCGCTAGTGGCCTCTGTCATCACGCGGTC
CTCGCTCGCTCCCCAGGCCAACTTCGAAGCCCGGGCGTCCTCGCCCTTCC
TCGCCGCCGACATTTTCCGCCATTTTGACGCCAAGATCGCCTATATGGCG
ACCTCCCTCGCCTCCCTCGCCCCGCCGGAGCCGCTTCCCGGCGTTGACCG
GGACGATGTGCTCTGCCGCCACCCTGGTGACGGCGGTGACGCCTACAGCG
GCGGCGGCTGCGGCGGCAGCAGCGATGGCAGCGACGACGGCAGCGGCGGT
GGCAGCAGCGGCAGCGGTGAAGGTGATGATGATGGTGCCGGCAGGGGCGG
CAGCGGCAACGATGGCGGCGGCGGCAGGGGCGCGGTGGAGGCAGGGGCGG
CGGCGGCAGGGGCGGCGGCGACTGCAGTGGCGGTGGCAGCTGTAATTGTG
GGGGCGACGGCGGTGGCAGCGGAAACGGCAGTGCCGGCGGCCTCATGCGG
TCGTGGGATCTGCAGTTGTTCTCTGACTTCCGGCTTGACCCGGATAAGTC
TCGCTTGCCGTTTTCAGCGGCACAGCTCTCGCCCGCGAGGCCTTGACGGA
GGAGGCCTGCTTCGGCCCGCTTCCCATGGCGGCGGCGTCGACTACCACGG
CGGCCCAGTTGGGACGAGTCGTCCCAAAGTCCTCGGTCCTGTTTGCGGCA
GGCAACAACCAACCAGAGGACGACCGAAGACGTGGTGGGTGCGATGTCAG
AGTATCGGTCAGCCAGTCTTGCCCAACCAGTGGCGGCGGCGGCTG
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