mRNA_P-wetherbeei_contig12164.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: D7FKD9_ECTSI (MutS protein homolog 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD9_ECTSI) HSP 1 Score: 180 bits (457), Expect = 5.620e-50 Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 1
Query: 10 VRELDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
+REL++ ++ EE AL AA + ELDA LALA+VA DFG VRP+VVE NV++IKNGRHPLQ + V+ FIPNDT+IA RV +ITGA SGKSVY+KQVG V+LAH+G F+P E+AVIGL DRI+TRIATVE+ S+PQS+FTID+ Q
Sbjct: 354 MRELEDALIAEEGALHAAASVLAELDAALALASVAGDFGFVRPEVVEDNVIMIKNGRHPLQEMAVDLFIPNDTFIA-DGSRVALITGANCSGKSVYLKQVGVAVYLAHVGSFVPAEKAVIGLTDRIFTRIATVETSSLPQSSFTIDVNQ 501
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: A0A4D9D1J2_9STRA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1J2_9STRA) HSP 1 Score: 145 bits (366), Expect = 4.170e-37 Identity = 87/176 (49.43%), Postives = 112/176 (63.64%), Query Frame = 1
Query: 10 VRELDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYI------AVPR---------------CR------VGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
+R+L E +L EE AL A A ELD L+A A +A VRP V E VV++K+GRHPLQ LTVE+FIPND ++ AV R C V ++TG +SGKSVYIK VG LV+LAH+GCFLPC++A+IG+ D I TRIA+ E+V+V QS+FTID +Q
Sbjct: 245 LRQLAEEILKEEIALTEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQELTVETFIPNDVFLMGGDGNAVHRDGDDEKHAQKQGLEHCNQNGTRGVAVVTGPNFSGKSVYIKMVGMLVYLAHLGCFLPCQQALIGVVDSIRTRIASAETVTVQQSSFTIDCSQ 420
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: W7TMA2_9STRA (Mismatch repair protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMA2_9STRA) HSP 1 Score: 145 bits (367), Expect = 6.620e-37 Identity = 87/176 (49.43%), Postives = 111/176 (63.07%), Query Frame = 1
Query: 10 VRELDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYI------AVPR---------------CR------VGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
+R+L E +L EE AL A A ELD L+A A +A VRP V E VV++K+GRHPLQ LTVE+FIPND ++ AV R C V ++TG +SGKSVYIK VG LV+LAH+GCFLPC +A+IG+ D I TRIA+ E+V+V QS+FTID +Q
Sbjct: 542 LRQLAEEILKEETALAEAVRACAELDVLMAFAQLAGGLAWVRPMVTEERVVVVKDGRHPLQELTVETFIPNDVFLMGGDGNAVHRDGGDEKHAQKQGLEHCNQHGTRGVAVVTGPNFSGKSVYIKMVGVLVYLAHLGCFLPCRQALIGVVDSIRTRIASAETVTVQQSSFTIDCSQ 717
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: D8R9G5_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R9G5_SELML) HSP 1 Score: 143 bits (361), Expect = 8.740e-37 Identity = 76/151 (50.33%), Postives = 109/151 (72.19%), Query Frame = 1
Query: 4 AAVRELDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
A ++EL+ V EPA++ +A +LD L+++A A ++ RP++VE +++IIKNGRHPLQ LTV++F+PN+T I + R+ ++TG YSGKSVYIKQV +VFL+HIG F+P + AVIG+ DRI+TR+ +S VPQSTF DL Q
Sbjct: 211 AILKELESKVQKYEPAVRYSADLTAQLDCLVSMAISAGEYNYNRPRLVEDDILIIKNGRHPLQELTVDTFVPNNTQIE-EKGRICVVTGPNYSGKSVYIKQVALIVFLSHIGSFVPADEAVIGITDRIFTRLPCKQSTKVPQSTFMTDLHQ 360
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: D8SEG8_SELML (DNA_MISMATCH_REPAIR_2 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SEG8_SELML) HSP 1 Score: 143 bits (361), Expect = 8.740e-37 Identity = 76/151 (50.33%), Postives = 108/151 (71.52%), Query Frame = 1
Query: 4 AAVRELDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
A ++EL+ V EPA++ +A +LD L+++A A ++ RP++VE +++IIKNGRHPLQ LTV++F+PN+T I + R+ ++TG YSGKSVYIKQV +VFL+HIG F+P + AVIG DRI+TR+ +S VPQSTF DL Q
Sbjct: 211 AILKELESKVQKYEPAVRYSADLTAQLDCLVSMAISAGEYNYNRPRLVEDDILIIKNGRHPLQELTVDTFVPNNTQIE-EKGRISVVTGPNYSGKSVYIKQVALIVFLSHIGSFVPADEAVIGTTDRIFTRLPCKQSTKVPQSTFMTDLHQ 360
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: A0A482T1K6_9ARCH (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1K6_9ARCH) HSP 1 Score: 140 bits (354), Expect = 1.840e-36 Identity = 75/146 (51.37%), Postives = 105/146 (71.92%), Query Frame = 1
Query: 19 LDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
L+E +L E ++ A ++ LDA ++L +A + L P + + V++IK GRH LQ LTV+SF+PND+ + P V +I+G SGKS+Y+KQVG +V+LAHIG F+PCE+A+IGL D+I TRI T ESVSVPQS+FT+DLTQ
Sbjct: 98 LEEGLLDLEGSIVQATTSIATLDAFISLGIMARECNLSAPHIHDDPVIVIKGGRHLLQELTVDSFVPNDSLLT-PEKNVALISGPNSSGKSIYLKQVGIIVYLAHIGSFVPCEQAIIGLTDKILTRIKTTESVSVPQSSFTMDLTQ 242
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: I0YMF5_COCSC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMF5_COCSC) HSP 1 Score: 142 bits (358), Expect = 1.040e-35 Identity = 75/137 (54.74%), Postives = 92/137 (67.15%), Query Frame = 1
Query: 46 PALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
P+L A E+D LL+LA A DFG RP++ + NV+ IK GRHPL L V+ FIPNDT + RV +ITG YSGKS Y KQV +VFLAHIG F+P A +GL DRI+TRI T E+ SVPQS F ID++Q
Sbjct: 546 PSLSRAVALAAEVDCLLSLAQCARDFGYSRPRLTQDNVLHIKQGRHPLAELVVDRFIPNDTAMHADSARVQVITGPNYSGKSCYAKQVALIVFLAHIGSFVPAAEATVGLTDRIFTRIVTTEAQSVPQSAFMIDMSQ 682
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: A0A2R6WVC4_MARPO (DNA_MISMATCH_REPAIR_2 domain-containing protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WVC4_MARPO) HSP 1 Score: 136 bits (342), Expect = 4.100e-34 Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = 1
Query: 52 LQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
L+ AA E+D + ALA A D+G VRP + E +V+II+NGRH LQ +T ++PNDT+I R+ I+TG YSGKS+Y KQV + FLAHIG F+P ++A+IG+ DRI+TR+A+ E+V + QS+F IDL Q
Sbjct: 217 LESAAKVAAEIDCVTALAIAARDYGYVRPDLREDDVLIIENGRHVLQEMTANRYVPNDTHIT-KEGRINIVTGPNYSGKSIYAKQVALITFLAHIGSFVPADKAIIGIQDRIFTRVASKETVGISQSSFMIDLNQ 350
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: A0A8J9SQP3_9CHLO (Probable MutS protein homolog 5 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SQP3_9CHLO) HSP 1 Score: 137 bits (345), Expect = 5.880e-34 Identity = 72/137 (52.55%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 46 PALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
P+L A E+D LL+LA A DF RP++ NV+ IK GRH L L V+ FIPNDT + RV +ITG YSGKS Y KQV ++FLAHIG F+P A +GL DRI+TRI T E++SVPQS+F ID++Q
Sbjct: 569 PSLSRAVALAAEVDCLLSLAQCARDFRYNRPKLTSDNVLHIKQGRHALSELVVDQFIPNDTVMHADTARVQVITGPNYSGKSCYAKQVALIIFLAHIGSFVPAAEATVGLTDRIFTRIVTTEALSVPQSSFMIDMSQ 705
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Match: A0A2R6WVE1_MARPO (DNA_MISMATCH_REPAIR_2 domain-containing protein n=5 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WVE1_MARPO) HSP 1 Score: 136 bits (342), Expect = 1.350e-33 Identity = 69/135 (51.11%), Postives = 96/135 (71.11%), Query Frame = 1
Query: 52 LQLAAVAVGELDALLALAAVAVDFGLVRPQVVEANVVIIKNGRHPLQSLTVESFIPNDTYIAVPRCRVGIITGATYSGKSVYIKQVGALVFLAHIGCFLPCERAVIGLCDRIYTRIATVESVSVPQSTFTIDLTQ 456
L+ AA E+D + ALA A D+G VRP + E +V+II+NGRH LQ +T ++PNDT+I R+ I+TG YSGKS+Y KQV + FLAHIG F+P ++A+IG+ DRI+TR+A+ E+V + QS+F IDL Q
Sbjct: 549 LESAAKVAAEIDCVTALAIAARDYGYVRPDLREDDVLIIENGRHVLQEMTANRYVPNDTHIT-KEGRINIVTGPNYSGKSIYAKQVALITFLAHIGSFVPADKAIIGIQDRIFTRVASKETVGISQSSFMIDLNQ 682 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12164.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12164.1.1 >prot_P-wetherbeei_contig12164.1.1 ID=prot_P-wetherbeei_contig12164.1.1|Name=mRNA_P-wetherbeei_contig12164.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp AAAVRELDEFVLLEEPALQLAAVAVGELDALLALAAVAVDFGLVRPQVVEback to top mRNA from alignment at P-wetherbeei_contig12164:2..1482+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12164.1.1 ID=mRNA_P-wetherbeei_contig12164.1.1|Name=mRNA_P-wetherbeei_contig12164.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1481bp|location=Sequence derived from alignment at P-wetherbeei_contig12164:2..1482+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12164:2..1482+ >mRNA_P-wetherbeei_contig12164.1.1 ID=mRNA_P-wetherbeei_contig12164.1.1|Name=mRNA_P-wetherbeei_contig12164.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig12164:2..1482+ (Phaeothamnion wetherbeei SAG_119_79)back to top |