mRNA_P-wetherbeei_contig12160.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12160.2.1
Unique NamemRNA_P-wetherbeei_contig12160.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F3YHQ7_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YHQ7_9PROT)

HSP 1 Score: 136 bits (342), Expect = 1.540e-37
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    1 LVAAGMLSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPA 330
            L    +L AC  +        +  + PYR+ IQQGNF+SQE V+QLK GMT+EQVRFVLGTPLVTDIFH DRWDYV++REL DGK ++RN++V FE+D+L RV GD+ PA
Sbjct:   15 LAGVALLPACKSVD----VPKVPGVTPYRMVIQQGNFISQEMVAQLKPGMTKEQVRFVLGTPLVTDIFHADRWDYVFFRELADGKREQRNLAVVFEKDKLVRVLGDLLPA 120          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F4F102_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F102_9PROT)

HSP 1 Score: 131 bits (329), Expect = 7.270e-37
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = 1
Query:   64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
            I  I PY+++IQQGNF+SQE VSQLK GM++EQVRFVLGTPL+TDIFH +RWDYVY+RE   GK ++R ++VFF   +LAR+ GDV PA  GQ
Sbjct:   20 IPGITPYKMEIQQGNFVSQEMVSQLKPGMSKEQVRFVLGTPLITDIFHGERWDYVYWREDASGKREQRKLAVFFADGKLARLDGDVVPAKAGQ 112          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A536SKH9_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SKH9_9PROT)

HSP 1 Score: 128 bits (322), Expect = 9.200e-36
Identity = 56/93 (60.22%), Postives = 76/93 (81.72%), Query Frame = 1
Query:   64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
            I  I PY+ +IQQGN++SQE +SQ+K GMTREQVRF+LGTPL+TDIFH DRWDYVY+RE ++GK + R +++FF+  +LAR++GDV   A G+
Sbjct:   23 IPGITPYQPEIQQGNYVSQEMISQVKPGMTREQVRFILGTPLLTDIFHADRWDYVYWREAENGKRESRRLALFFDDGKLARIAGDVASPATGR 115          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A521YUQ2_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YUQ2_9PROT)

HSP 1 Score: 127 bits (319), Expect = 2.870e-35
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 1
Query:   64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
            I  I PY+++IQQGNF+SQE VS+LK GMT+EQVRFVLGTPL+TDIFH +RWDYVY+ E Q G  ++R ++VFF+  +LAR+ GDV PA   Q
Sbjct:   26 IPGITPYKMEIQQGNFVSQEMVSKLKPGMTKEQVRFVLGTPLITDIFHGNRWDYVYWHEDQAGNREQRKLAVFFDNGKLARLDGDVVPAKAAQ 118          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F3XAS7_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium RBG_16_64_9 TaxID=1797478 RepID=A0A1F3XAS7_9PROT)

HSP 1 Score: 126 bits (317), Expect = 7.790e-35
Identity = 68/126 (53.97%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   22 SACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGK-TDRRNISVFFEQDRLARVSGDVTPAAQGQKDAPVPKPATSAPDAPKA 396
            +ACSY+P++          P+RI+IQQGNF+SQE V QLK GMTR+QVRF +GTPLV D+FH DRWDYV+ R+  + +  ++R ISVFFEQD+LAR+ GDV  A         P  ATS P AP A
Sbjct:   14 AACSYIPNL---------SPHRIEIQQGNFVSQEMVGQLKVGMTRDQVRFAMGTPLVADLFHGDRWDYVFVRQRANSREVEQRRISVFFEQDKLARIEGDVVGAR--------PTSATSTPAAPAA 122          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A7V8BZD2_9RHOO (Outer membrane protein assembly factor BamE n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7V8BZD2_9RHOO)

HSP 1 Score: 127 bits (319), Expect = 1.220e-34
Identity = 63/111 (56.76%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   19 LSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQKDA 351
            L+ACS   +M      SA+ PYRIDI+QGN+++QE V+QLK GMTR+QVRF+LGTPLV DIFH DRWDY+Y  +   G+   R  +VFFE +RLARV+GDV  A  G+ +A
Sbjct:   13 LAACS---NMQMPDVASAVTPYRIDIRQGNYVTQEMVAQLKPGMTRDQVRFILGTPLVADIFHADRWDYIYSFKPGRGELQLRRFAVFFEDNRLARVAGDVVGAEPGETEA 120          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A7Y8JD77_9RHOO (Outer membrane protein assembly factor BamE n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8JD77_9RHOO)

HSP 1 Score: 125 bits (314), Expect = 3.460e-34
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1
Query:    1 LVAAGMLSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQG 339
            LVAA  L+ACS  P +      S + PYRID++QGN+++QE V++LK GMTR+QVRF LGTPL+TD+FH +RWDYVY  +   G+   R +SVFFE D+L RV GDV  A +G
Sbjct:   13 LVAA--LAACSSAPDIT-----SRLSPYRIDVRQGNYVTQEMVAKLKPGMTRDQVRFALGTPLITDLFHANRWDYVYRFQPGHGEAQERRLSVFFEDDKLVRVGGDVVAAGEG 118          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A1F4DQR4_9PROT (Outer membrane protein assembly factor BamE n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4DQR4_9PROT)

HSP 1 Score: 125 bits (315), Expect = 5.050e-34
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   25 ACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGK-TDRRNISVFFEQDRLARVSGDVTPA 330
            AC +LP++          P+RI+IQQGNF+SQE V+QLK GMT++QVRF +GTPLV D+FH DRWDYV+ R   D + T+RR ISV+FEQDRL R+ GDV  A
Sbjct:   52 ACGHLPNL---------SPHRIEIQQGNFISQEMVAQLKSGMTKDQVRFAMGTPLVVDVFHGDRWDYVFVRRRADSRDTERRRISVYFEQDRLTRIEGDVVAA 145          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A536X8L5_9PROT (Outer membrane protein assembly factor BamE n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X8L5_9PROT)

HSP 1 Score: 124 bits (310), Expect = 5.920e-34
Identity = 52/93 (55.91%), Postives = 75/93 (80.65%), Query Frame = 1
Query:   64 ISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPAAQGQ 342
            I  I PY+ +IQQGN++S E ++Q+K GMTREQVRF+LGTPL+TDIFH DRWDY+Y+RE ++GK + R +++FF++ +LAR+ GD+   A G+
Sbjct:   22 IPGITPYKPEIQQGNYVSPELIAQVKPGMTREQVRFLLGTPLLTDIFHADRWDYIYWREAENGKRESRRVALFFDEGKLARIVGDIASPAAGR 114          
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Match: A0A6C1B781_9RHOO (Outer membrane protein assembly factor BamE n=1 Tax=Nitrogeniibacter mangrovi TaxID=2016596 RepID=A0A6C1B781_9RHOO)

HSP 1 Score: 125 bits (313), Expect = 6.030e-34
Identity = 57/104 (54.81%), Postives = 81/104 (77.88%), Query Frame = 1
Query:   19 LSACSYLPSMXXXXXISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQVRFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSGDVTPA 330
            L A + L ++        ++PYR+DI+QGNF++Q+ +SQLKKGM+REQVRF LGTPL+TD+FH DRWDYVY  +   G+T++R ++++FE D+LARV+GDVT A
Sbjct:    9 LIAAAVLLTVAGCGVTEKLRPYRLDIRQGNFVTQDMISQLKKGMSREQVRFALGTPLLTDVFHADRWDYVYRFKPGYGETEQRIVTLYFENDKLARVAGDVTAA 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12160.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3YHQ7_9PROT1.540e-3759.09Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A1F4F102_9PROT7.270e-3764.52Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A536SKH9_9PROT9.200e-3660.22Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A521YUQ2_9PROT2.870e-3562.37Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A1F3XAS7_9PROT7.790e-3553.97Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A7V8BZD2_9RHOO1.220e-3456.76Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A7Y8JD77_9RHOO3.460e-3454.87Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A1F4DQR4_9PROT5.050e-3458.25Outer membrane protein assembly factor BamE n=2 Ta... [more]
A0A536X8L5_9PROT5.920e-3455.91Outer membrane protein assembly factor BamE n=1 Ta... [more]
A0A6C1B781_9RHOO6.030e-3454.81Outer membrane protein assembly factor BamE n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12160contigP-wetherbeei_contig12160:1004..1435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1000565.METUNv1_00372
Preferred namebamE
PFAMsSmpA_OmlA
Model size432
Max annot lvl206389|Rhodocyclales
KEGG koko:K06186
KEGG TC1.B.33.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.56e-32
EggNOG OGsCOG2913@1|root,COG2913@2|Bacteria,1N6YW@1224|Proteobacteria,2VRC6@28216|Betaproteobacteria,2KX54@206389|Rhodocyclales
DescriptionPart of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Cds size417
COG categoryM
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.5140626-CDS-P-wetherbeei_contig12160:1003..14201683185939.5140626-CDS-P-wetherbeei_contig12160:1003..1420Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12160 1004..1420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.5252566-UTR-P-wetherbeei_contig12160:1420..14351683185939.5252566-UTR-P-wetherbeei_contig12160:1420..1435Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12160 1421..1435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12160.2.1prot_P-wetherbeei_contig12160.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12160 1004..1420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12160.2.1

>prot_P-wetherbeei_contig12160.2.1 ID=prot_P-wetherbeei_contig12160.2.1|Name=mRNA_P-wetherbeei_contig12160.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MLSACSYLPSMPSMPSISAIKPYRIDIQQGNFLSQETVSQLKKGMTREQV
RFVLGTPLVTDIFHPDRWDYVYYRELQDGKTDRRNISVFFEQDRLARVSG
DVTPAAQGQKDAPVPKPATSAPDAPKAPVPGAASAAKN*
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mRNA from alignment at P-wetherbeei_contig12160:1004..1435-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12160.2.1 ID=mRNA_P-wetherbeei_contig12160.2.1|Name=mRNA_P-wetherbeei_contig12160.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig12160:1004..1435- (Phaeothamnion wetherbeei SAG_119_79)
CTCGTGGCGGCCGGCATGCTTTCGGCGTGCAGCTACCTGCCGTCGATGCC ATCCATGCCGTCGATCAGCGCGATCAAGCCATACCGCATCGACATCCAGC AGGGCAACTTCCTTTCACAGGAGACGGTGTCCCAGCTGAAGAAGGGCATG ACCCGCGAGCAGGTCAGGTTCGTGCTCGGCACGCCGCTGGTGACGGACAT CTTTCACCCGGACCGGTGGGACTACGTCTACTACCGCGAACTCCAGGACG GCAAGACGGACCGGAGGAACATCTCGGTGTTCTTCGAGCAGGACCGCCTG GCCCGCGTTTCCGGCGACGTGACACCCGCGGCGCAGGGGCAGAAGGACGC ACCCGTTCCGAAACCGGCAACGAGCGCTCCGGATGCGCCCAAGGCGCCGG TCCCGGGCGCGGCGTCGGCGGCCAAAAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12160:1004..1435-

>mRNA_P-wetherbeei_contig12160.2.1 ID=mRNA_P-wetherbeei_contig12160.2.1|Name=mRNA_P-wetherbeei_contig12160.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig12160:1004..1435- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTCGGCGTGCAGCTACCTGCCGTCGATGCCATCCATGCCGTCGAT
CAGCGCGATCAAGCCATACCGCATCGACATCCAGCAGGGCAACTTCCTTT
CACAGGAGACGGTGTCCCAGCTGAAGAAGGGCATGACCCGCGAGCAGGTC
AGGTTCGTGCTCGGCACGCCGCTGGTGACGGACATCTTTCACCCGGACCG
GTGGGACTACGTCTACTACCGCGAACTCCAGGACGGCAAGACGGACCGGA
GGAACATCTCGGTGTTCTTCGAGCAGGACCGCCTGGCCCGCGTTTCCGGC
GACGTGACACCCGCGGCGCAGGGGCAGAAGGACGCACCCGTTCCGAAACC
GGCAACGAGCGCTCCGGATGCGCCCAAGGCGCCGGTCCCGGGCGCGGCGT
CGGCGGCCAAAAACTGA
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