mRNA_P-wetherbeei_contig12156.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12156.2.1
Unique NamemRNA_P-wetherbeei_contig12156.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: D7FP98_ECTSI (Flagellar radial spoke protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP98_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.770e-21
Identity = 86/192 (44.79%), Postives = 109/192 (56.77%), Query Frame = 1
Query:    1 LDMSAFLVESEHRAARPAVREACSQSDAFKPRPPSPPFQPRCTGTDA--EAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            LD+S +LVE    AARP  REA +Q+D F+ RP +P F P+ TG DA  + +V D LFDF+AE++P+L VLV KTLEQA +E ERE E+  +   + A    R EE                XXXXXXXXXXXXX        K    QL RQ+ P  L+ A   L A  +W   + +QI+ VF PWL  RV
Sbjct:  117 LDLSRYLVEPGDTAARPE-READTQTDDFQERPQTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKTLEQARMEVEREHELLCIREAATALVHQRAEEVQQVLELKQAAVEAEKXXXXXXXXXXXXXNRRRLAKEKVACLQLVRQVLPLSLDRAFEQLSA-KSWETQSVQQIKKVFLPWLFGRV 306          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: F0Y5T0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5T0_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 6.030e-18
Identity = 68/191 (35.60%), Postives = 92/191 (48.17%), Query Frame = 1
Query:    1 LDMSAFLVESEHRAARPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQVGDDL-FDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            LD++ +LVE E+ ++  AV EA +Q+D F  +PP  PF P  TG DA   + DD  F F+ E++PLL VLVSKTLEQA +E E+E E+AA+    +   A +  E                                     K  S +L  QL P + EGA        +WVEP   +I+A   PWL  RV
Sbjct:  110 LDLTPYLVEKEYASS--AVEEA-AQTDGFLEQPPPAPFAPPKTGVDASTSMEDDQPFVFNNEVQPLLAVLVSKTLEQAMLEVEQEEELAAIADDMSDKLARQAAEKARVEAMEQAEVDREKAKLGDFESARAALVEEQTLARKVASSRLVDQLLPEIFEGAYRHFEDRGSWVEPVLHEIKATTLPWLYARV 297          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A835YQI5_9STRA (Radial spoke protein 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-16
Identity = 82/208 (39.42%), Postives = 103/208 (49.52%), Query Frame = 1
Query:    1 LDMSAFLVESE-----------HRAARPA------VREACSQSDAFKPRPPSPPFQPRCTGTDAEAQV-GDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            LD+S +LV  E           +R   PA        ++ +Q+D F  +P    ++    G DA  +V   +LFDFD EI+PLLDVL+ KTLEQA +E ER  E+  +   +    A R  E              XXXXXXXXXXXXXX         K  +  + RQ WP VL GAC ALRA   W EP A  I   F PWL+D V
Sbjct:  115 LDLSKYLVAPEPQIEDDASERINRQRAPASMPFYGFSDSVTQTDEFAEKPDEVYYKQPLGGADAATEVINTELFDFDREIKPLLDVLIGKTLEQAKLEVERSWELQQIAQATDRFNAERVAEARAQEQLEAAAIERXXXXXXXXXXXXXXALSRWQATQKVAAVCMMRQCWPGVLRGACEALRAAGRWCEPRAIDIADEFMPWLLDSV 322          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A8B9GLA9_9PSIT (Radial spoke head 3 n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9GLA9_9PSIT)

HSP 1 Score: 78.2 bits (191), Expect = 7.030e-14
Identity = 68/166 (40.96%), Postives = 86/166 (51.81%), Query Frame = 1
Query:   73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            Q+DAF  RPPSP F P  TG D   Q+  +LFDFD E++P+L+VL+ KT+EQA +E   E E+A L A   A A  R  E              XXXXXXXXXXXX           K  +Q  A+     ++    + LR G  + +P  R IE  F PWLM  V
Sbjct:   38 QTDAFLDRPPSPFFIPAKTGKDVATQLAGELFDFDIEVKPILEVLIGKTVEQALLEVMEEEELAQLWAHQRAYAELRNAELAEVQRLEEQDRRYXXXXXXXXXXXXQMLKKQKETAEKIAAQAFAKHYLADLIPSVFNNLREGGFFYDPIERDIETEFLPWLMTEV 203          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: UPI001F5EBF31 (radial spoke head protein 3 homolog n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5EBF31)

HSP 1 Score: 78.6 bits (192), Expect = 9.290e-14
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   46 RPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQV-GDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAAL 270
            RP   +AC Q+D F  RPP+PP+ P  TG D E Q+   DLFDFD E+EP+L+VLV KT+EQA +E   E EMAA+
Sbjct:  128 RPLEEDACCQTDLFLDRPPTPPYVPAKTGLDQETQIYPGDLFDFDLEVEPILEVLVGKTIEQAMIEVLSEEEMAAM 203          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A672UCZ0_STRHB (Radial spoke head 3 n=6 Tax=Psittaciformes TaxID=9223 RepID=A0A672UCZ0_STRHB)

HSP 1 Score: 78.6 bits (192), Expect = 1.130e-13
Identity = 68/166 (40.96%), Postives = 86/166 (51.81%), Query Frame = 1
Query:   73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            Q+DAF  RPPSP F P  TG D   Q+  +LFDFD E++P+L+VL+ KT+EQA +E   E E+A L A   A A  R  E              XXXXXXXXXXXX           K  +Q  A+     ++    + LR G  + +P  R IE  F PWLM  V
Sbjct:  171 QTDAFLDRPPSPFFVPAKTGKDVATQLAGELFDFDIEVKPILEVLIGKTVEQALLEVMEEEELAQLWAHQRAYAELRNAELAEVQRLEEQDRRYXXXXXXXXXXXXQMLKKQKETAEKIAAQAFAKHYLADLIPSVFNNLREGGFFYDPIERDIETEFLPWLMTEV 336          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: UPI001F5023D2 (radial spoke head protein 3 homolog n=1 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F5023D2)

HSP 1 Score: 78.6 bits (192), Expect = 1.340e-13
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   46 RPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQV-GDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAAL 270
            RP   +AC Q+D F  RPP+PP+ P  TG D E Q+   DLFDFD E+EP+L+VLV KT+EQA +E   E EMAA+
Sbjct:  421 RPLEEDACCQTDLFLDRPPTPPYVPAKTGLDQETQIYPGDLFDFDLEVEPILEVLVGKTIEQAMIEVLSEEEMAAM 496          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A8C5PNK0_9ANUR (Radial spoke head 3 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PNK0_9ANUR)

HSP 1 Score: 77.4 bits (189), Expect = 2.010e-13
Identity = 85/167 (50.90%), Postives = 106/167 (63.47%), Query Frame = 1
Query:   73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGD-DLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            Q+DAF  RPP+P F P  TG D   Q+ D +LFDFD E++P+L+VLV KT+EQA +E   E E+AAL     A    R  E  XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      K  ++  A+Q    ++    S+LR    + +P  R +E VF PWLM+ V
Sbjct:  133 QTDAFLDRPPTPLFIPAKTGVDIATQILDGELFDFDLEVKPMLEVLVGKTIEQALLEVMEEEELAALREQQRAFEELRDAELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKETAEKVAARAFAQQYLADLVPSVFSSLRDNGYFYDPVERDVETVFMPWLMEEV 299          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A8C6J1W9_MELUD (Radial spoke head 3 n=2 Tax=Melopsittacus undulatus TaxID=13146 RepID=A0A8C6J1W9_MELUD)

HSP 1 Score: 77.0 bits (188), Expect = 3.700e-13
Identity = 70/166 (42.17%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   73 QSDAFKPRPPSPPFQPRCTGTDAEAQVGDDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            Q+DAF  RPPSP F P  TG D   Q+  +LFDFD E++P+L+VLV KT+EQA +E   E E+A L A   A A  R  E            XXXXXXXXXXXXXX           K  +Q   +     ++    + LR G  + +P  R IE  F PWLM  V
Sbjct:  136 QTDAFLDRPPSPFFIPAKTGKDVATQLAGELFDFDIEVKPILEVLVGKTVEQALLEVMEEEELAQLWAHQRAYAELRNAELAEVQRLEEEDRXXXXXXXXXXXXXXQMLKKQKETAEKIAAQAFTKHYLADLIPSVFNNLREGGFFYDPIERDIETEFLPWLMTEV 301          
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Match: A0A3B3BE54_ORYME (Radial spoke head 3 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BE54_ORYME)

HSP 1 Score: 75.9 bits (185), Expect = 4.780e-13
Identity = 67/175 (38.29%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   49 PAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQVGD-DLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAGSQQLARQLWPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV 570
            P V+E   Q+DAF  RP +P F P  TG DAE Q+ + DLFDF+ E+ P+L++LV KTLEQ+ +E   E E+AAL+A   A    R  +           XXXXXXX                   +A +QQ    L PSVL    ++LR    + +P  R +E  F+P LM+ V
Sbjct:  104 PVVKEIECQTDAFLDRPETPIFIPAKTGKDAETQIDEGDLFDFEEEVRPILEILVGKTLEQSLLEVMEEEELAALMAQQRAFLERRNNQLPEVHRLQEQEXXXXXXXVKQKRALQEEKEVAEKIAARALTQQQLADLVPSVL----ASLRREGYFYDPVERDVETHFFPRLMEDV 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12156.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP98_ECTSI3.770e-2144.79Flagellar radial spoke protein n=1 Tax=Ectocarpus ... [more]
F0Y5T0_AURAN6.030e-1835.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YQI5_9STRA1.250e-1639.42Radial spoke protein 3-domain-containing protein n... [more]
A0A8B9GLA9_9PSIT7.030e-1440.96Radial spoke head 3 n=1 Tax=Amazona collaria TaxID... [more]
UPI001F5EBF319.290e-1455.26radial spoke head protein 3 homolog n=1 Tax=Schist... [more]
A0A672UCZ0_STRHB1.130e-1340.96Radial spoke head 3 n=6 Tax=Psittaciformes TaxID=9... [more]
UPI001F5023D21.340e-1355.26radial spoke head protein 3 homolog n=1 Tax=Schist... [more]
A0A8C5PNK0_9ANUR2.010e-1350.90Radial spoke head 3 n=1 Tax=Leptobrachium leishane... [more]
A0A8C6J1W9_MELUD3.700e-1342.17Radial spoke head 3 n=2 Tax=Melopsittacus undulatu... [more]
A0A3B3BE54_ORYME4.780e-1338.29Radial spoke head 3 n=1 Tax=Oryzias melastigma Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12156contigP-wetherbeei_contig12156:1390..1959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FP98
PFAMsRadial_spoke_3
Model size570
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-20
EggNOG OGs2BDNM@1|root,2S132@2759|Eukaryota
Ec32 ortholog descriptionRadial spoke 3
Ec32 orthologEc-08_000250.1
DescriptionRadial spoke protein 3
Cds size564
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.432016-CDS-P-wetherbeei_contig12156:1389..19531683185939.432016-CDS-P-wetherbeei_contig12156:1389..1953Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12156 1390..1953 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185939.4434316-UTR-P-wetherbeei_contig12156:1953..19591683185939.4434316-UTR-P-wetherbeei_contig12156:1953..1959Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12156 1954..1959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12156.2.1prot_P-wetherbeei_contig12156.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12156 1390..1953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12156.2.1

>prot_P-wetherbeei_contig12156.2.1 ID=prot_P-wetherbeei_contig12156.2.1|Name=mRNA_P-wetherbeei_contig12156.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MSAFLVESEHRAARPAVREACSQSDAFKPRPPSPPFQPRCTGTDAEAQVG
DDLFDFDAEIEPLLDVLVSKTLEQAHVEAEREGEMAALVAVSAAAAAARC
EEAAAVATAEAVALATARERRVAQRAQRREAEARARLLAKAGSQQLARQL
WPSVLEGACSALRAGDAWVEPAARQIEAVFWPWLMDRV
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mRNA from alignment at P-wetherbeei_contig12156:1390..1959-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12156.2.1 ID=mRNA_P-wetherbeei_contig12156.2.1|Name=mRNA_P-wetherbeei_contig12156.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig12156:1390..1959- (Phaeothamnion wetherbeei SAG_119_79)
CTGGACATGTCCGCCTTCCTCGTCGAGAGCGAGCATCGCGCCGCACGGCC CGCCGTGCGCGAGGCGTGCTCCCAGTCGGACGCCTTTAAGCCGCGGCCGC CGTCGCCGCCCTTCCAGCCCCGCTGCACCGGCACCGACGCCGAAGCGCAG GTCGGAGACGATCTCTTTGACTTTGACGCCGAGATCGAACCGCTGCTCGA CGTGTTGGTCTCCAAGACGCTCGAGCAGGCGCACGTCGAAGCTGAGCGGG AAGGAGAAATGGCGGCGCTGGTGGCGGTCTCCGCCGCTGCCGCCGCCGCC CGCTGCGAGGAGGCGGCCGCTGTCGCCACCGCCGAAGCCGTCGCGCTCGC CACCGCCCGCGAGCGCCGCGTCGCCCAGCGGGCGCAGCGCCGTGAGGCGG AGGCGCGGGCACGCTTGCTGGCCAAGGCTGGCAGCCAGCAGCTGGCGCGG CAGCTGTGGCCGTCGGTGTTGGAAGGTGCCTGCTCTGCGCTGCGTGCCGG CGACGCCTGGGTGGAGCCGGCGGCGCGCCAGATCGAGGCCGTCTTCTGGC CGTGGCTCATGGACCGTGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12156:1390..1959-

>mRNA_P-wetherbeei_contig12156.2.1 ID=mRNA_P-wetherbeei_contig12156.2.1|Name=mRNA_P-wetherbeei_contig12156.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig12156:1390..1959- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGCCTTCCTCGTCGAGAGCGAGCATCGCGCCGCACGGCCCGCCGT
GCGCGAGGCGTGCTCCCAGTCGGACGCCTTTAAGCCGCGGCCGCCGTCGC
CGCCCTTCCAGCCCCGCTGCACCGGCACCGACGCCGAAGCGCAGGTCGGA
GACGATCTCTTTGACTTTGACGCCGAGATCGAACCGCTGCTCGACGTGTT
GGTCTCCAAGACGCTCGAGCAGGCGCACGTCGAAGCTGAGCGGGAAGGAG
AAATGGCGGCGCTGGTGGCGGTCTCCGCCGCTGCCGCCGCCGCCCGCTGC
GAGGAGGCGGCCGCTGTCGCCACCGCCGAAGCCGTCGCGCTCGCCACCGC
CCGCGAGCGCCGCGTCGCCCAGCGGGCGCAGCGCCGTGAGGCGGAGGCGC
GGGCACGCTTGCTGGCCAAGGCTGGCAGCCAGCAGCTGGCGCGGCAGCTG
TGGCCGTCGGTGTTGGAAGGTGCCTGCTCTGCGCTGCGTGCCGGCGACGC
CTGGGTGGAGCCGGCGGCGCGCCAGATCGAGGCCGTCTTCTGGCCGTGGC
TCATGGACCGTGTC
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