mRNA_P-wetherbeei_contig12144.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A6I3F1S6_9ACTN (PadR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A6I3F1S6_9ACTN) HSP 1 Score: 127 bits (319), Expect = 3.950e-35 Identity = 67/106 (63.21%), Postives = 80/106 (75.47%), Query Frame = 1 Query: 1 ATGEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGWAEHEPN-----DIVALWRIESSQAALRFLD 303 ATGEEPGIAGGNRTILAATR GR QL WL TPV HLRD+RSELLLKLV+A+ C +D + +L++QR I + A HE + D+VALWR E+SQAALRF+D Sbjct: 65 ATGEEPGIAGGNRTILAATRTGRVQLDEWLSTPVLHLRDLRSELLLKLVLADSCGVDRTPLLLRQRAHIATMTDALAPHEDDNTTAHDVVALWRSEASQAALRFID 170
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: UPI000E34B663 (PadR family transcriptional regulator n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E34B663) HSP 1 Score: 120 bits (301), Expect = 1.980e-32 Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1 Query: 1 ATGEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGWAEHEPNDIVALWRIESSQAALRFLDRL 309 A GEEPG AGGNRTILA TR GR + R W+ PV HLRD+RSELLLKLV+AE I+ S ++ QR ++ +AA + +P D+VALWR ES+QAA+RFL RL Sbjct: 65 AVGEEPGTAGGNRTILAPTRLGRRRFRQWVVAPVLHLRDLRSELLLKLVLAEASGIETSALVAAQRMAVDELAAAHGDPDPTDVVALWRHESAQAAVRFLARL 167
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A7K1B479_9ACTN (PadR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K1B479_9ACTN) HSP 1 Score: 113 bits (283), Expect = 1.020e-29 Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 1 Query: 1 ATGEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGWAEHEPNDIVALWRIESSQAALRFLDRL 309 A GEE G AGG RT+LAAT G A LR WL PV HLRDVRSELLLKLV+A+ +D ++LV+QR ++ IAA + +P+D+V LWR ES+ A +RFLD L Sbjct: 66 AVGEERGTAGGPRTVLAATPPGLAALRRWLVAPVPHLRDVRSELLLKLVLADRLGVDTRELLVQQRARVAEIAAARSNDDPDDVVVLWRRESADAVVRFLDAL 168
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A524MQT9_9ACTN (PadR family transcriptional regulator n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A524MQT9_9ACTN) HSP 1 Score: 112 bits (281), Expect = 2.150e-29 Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 7 GEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQ----RTQIERIAAG--WAEHEPNDIVALWRIESSQAALRFLDRL 309 G EPG AG NRTILAATRAGR+QLR+W++TPV HLRD+RSELLLK+ IA+ C I + ML Q R+Q +AAG A+ D VALWR E++QA LRFLD+L Sbjct: 69 GSEPGDAGPNRTILAATRAGRSQLRSWVRTPVEHLRDLRSELLLKIAIADRCGIVIGDMLAAQHDRLRSQAGSLAAGAFGADASVVDAVALWRFEAAQAGLRFLDQL 175
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A539E242_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E242_9ACTN) HSP 1 Score: 112 bits (279), Expect = 7.700e-29 Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 7 GEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGW---AEHEPN------------DIVALWRIESSQAALRFLDRLA 312 GEEPG+AGGNRT+LAATR GR QL WL TPV HLRD+RSELLLKLVI +L D S ++ Q + +AAG+ A +P D++ LWR ESS AALRFL+R+A Sbjct: 71 GEEPGLAGGNRTVLAATRPGRRQLDRWLATPVVHLRDLRSELLLKLVIGQLTGTDTSSLVAAQLELVRGLAAGYDTRAGDDPAHDAGSAVTSAAIDVIGLWRAESSHAALRFLERVA 187
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A2E0RRP9_9ACTN (PadR family transcriptional regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RRP9_9ACTN) HSP 1 Score: 107 bits (267), Expect = 2.520e-27 Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 10 EEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGWAEHEPND-------IVALWRIESSQAALRFLDRL 309 EEPG+ G R ++ ATR+GRA+ R+WL+TPV HLRD+RSELLLKLV A+ IDVS ML +QRT ++ +AA + P+D +V LWR+ES+ AA RFL L Sbjct: 65 EEPGVGGPTRVVVGATRSGRARFRSWLRTPVCHLRDLRSELLLKLVFADRLGIDVSTMLEQQRTIVDELAAAVSAVPPSDHDASDHDVVTLWRVESAAAAQRFLAHL 171
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A7K1CA02_9ACTN (PadR family transcriptional regulator n=2 Tax=root TaxID=1 RepID=A0A7K1CA02_9ACTN) HSP 1 Score: 107 bits (266), Expect = 3.570e-27 Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 7 GEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGWAEHEPNDIVALWRIESSQAALRFLDRL 309 GEEPG AGGNRTI+A TR+GRA LR W +TPV HLRD+RSELLLKLV+AE +ID ++ QR ++ A A D+V WR E + AA RFLD+L Sbjct: 74 GEEPGTAGGNRTIVAVTRSGRAALRAWCRTPVHHLRDLRSELLLKLVVAEANDIDTKALIAAQRIIVDDFVA--ANRGSRDVVTSWRHEMALAAKRFLDKL 172
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A6L6BLN7_9ACTN (PadR domain-containing protein n=5 Tax=root TaxID=1 RepID=A0A6L6BLN7_9ACTN) HSP 1 Score: 105 bits (263), Expect = 1.070e-26 Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 4 TGEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIE----RIAAGWAEHEPNDIVALWRIESSQAALRFLDRL 309 +GEE G+AGGNRT+L T+ GRA RTW+ TPV HLRD+R+ELLLKLV+A+ C ID+S ML QR I+ I + NDIV WR E ++A LRF+D L Sbjct: 69 SGEEAGLAGGNRTLLTMTKPGRAIFRTWINTPVVHLRDMRNELLLKLVLADECGIDMSTMLKTQRKNIKTLQRNIDNSLDRNSKNDIVHTWRREIAEATLRFIDAL 174
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A4R7HW03_9ACTN (DNA-binding PadR family transcriptional regulator n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HW03_9ACTN) HSP 1 Score: 104 bits (259), Expect = 5.400e-26 Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 10 EEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIERIAAGWAEHEPNDIVALWRIESSQAALRFLDRL 309 EE G G RTI+AATRAGRA+ R+WL+TPV HLRD+RSELLLKLV AE +IDV+ M+ QR ++ +A + D+V LWR ES+ AA RFL ++ Sbjct: 65 EETGGGGPTRTIMAATRAGRARFRSWLRTPVPHLRDLRSELLLKLVFAERLDIDVTAMVQDQRIVVDELAEALDAADDADVVTLWRAESAAAAQRFLAQM 164
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Match: A0A6I2VVW4_9ACTN (PadR domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I2VVW4_9ACTN) HSP 1 Score: 103 bits (257), Expect = 8.570e-26 Identity = 55/106 (51.89%), Postives = 72/106 (67.92%), Query Frame = 1 Query: 4 TGEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIAELCEIDVSKMLVKQRTQIE----RIAAGWAEHEPNDIVALWRIESSQAALRFLDRL 309 +GEE G+AGGNR +L T+ GRA RTW+ TPV HLRD+RSELLLKLV+A+ C ID+S ML QR I+ I + ++ ND V WR E ++A LRF+D + Sbjct: 69 SGEEAGLAGGNRMLLTITKPGRAIFRTWINTPVVHLRDMRSELLLKLVLADECGIDISDMLKAQRKDIKTLQRNIKSSLDGNDENDTVHKWRGEIAEATLRFIDSI 174 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12144.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12144.1.1 >prot_P-wetherbeei_contig12144.1.1 ID=prot_P-wetherbeei_contig12144.1.1|Name=mRNA_P-wetherbeei_contig12144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp ATGEEPGIAGGNRTILAATRAGRAQLRTWLQTPVTHLRDVRSELLLKLVIback to top mRNA from alignment at P-wetherbeei_contig12144:8..325+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12144.1.1 ID=mRNA_P-wetherbeei_contig12144.1.1|Name=mRNA_P-wetherbeei_contig12144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig12144:8..325+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12144:8..325+ >mRNA_P-wetherbeei_contig12144.1.1 ID=mRNA_P-wetherbeei_contig12144.1.1|Name=mRNA_P-wetherbeei_contig12144.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig12144:8..325+ (Phaeothamnion wetherbeei SAG_119_79)back to top |