mRNA_P-wetherbeei_contig12139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12139.1.1
Unique NamemRNA_P-wetherbeei_contig12139.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A836CMG6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.080e-24
Identity = 83/241 (34.44%), Postives = 116/241 (48.13%), Query Frame = 1 
Query:  172 GMVLILISIRSGAGDEFAVELASLPPVQACHLLQEYSTRERVLVLADPAPGDDRPDGAAVAAELARGRRTPPYTVTVTVAAARNLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPLGDSNTFVVNVASRIEAASKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASQEHDKWWDVEGGSGQLRLRIRIDQNIRLQVLP 894
            GM++  I    GAG     +  SL   +   LL+      R +   DP P     +GAA  A+ A   R   YTV++ V  A NLR AD+ SSDP+  LRLAG   RT V++ T SP W ETF F +LS + +L+ ++WD ++F  DD LGEV +   D  T  VN A    +++                                  +E  +W  VE G G+L+LRI I +N+ LQV+P
Sbjct:  170 GMLVSRIEAHLGAGRTLEHDTISLSAAETRSLLRPLQHLRRAVTFVDPPP-----EGAA--ADAAEDGRQALYTVSIEVVRAENLRVADVFSSDPYCQLRLAGMSRRTAVRKTTTSPAWHETFVFPLLSLEWELLCELWD-ENFGKDDSLGEVRI---DMRTLPVNRAVTSTSST----------------------GPGGKGPPPLPPRERIEWQPVENGKGRLKLRIHIQENVSLQVVP 377
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A2GAK4_TRIVA (C2 domain containing protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2GAK4_TRIVA)

HSP 1 Score: 63.9 bits (154), Expect = 6.500e-9
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:  400 VTVAAARNLRRADIVS-SDPFVVLRLA-GAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPLG 645
            V V  AR + + D+V  SDP+V +++  G V  T+V++N ++P W++ F F   S+D  L  ++ D D+ S DDP+GE+V+PLG
Sbjct:    6 VVVMEARGVPKVDVVGWSDPYVQVKVNDGKVVETKVRKNEKNPVWDKRFQFNATSKDT-LHLRLMDKDAISKDDPIGEIVIPLG 88
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: UPI0009E4221C (GTPase activating protein 1-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4221C)

HSP 1 Score: 60.5 bits (145), Expect = 2.700e-7
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  421 NLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGE 627
            NL   D+ SSDP+VVLRL     +TRV + T +P W+E  TF++      +  +++D D+FSSDDP+G+
Sbjct:   18 NLAVRDVRSSDPYVVLRLGKQKLKTRVIKKTVNPEWDEELTFSVEDPSFPVKLEVYDKDTFSSDDPMGD 86
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A1J7G6H5_LUPAN (C2 domain-containing protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A1J7G6H5_LUPAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.320e-6
Identity = 27/69 (39.13%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  421 NLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGE 627
            NL   D+ SSDP+VVL++     +TRV +   +P W E  TF++L  +  ++  ++DHD+FS DD +G+
Sbjct:   24 NLAVRDVRSSDPYVVLKMGKQKLKTRVIKKNVNPEWNEDITFSVLDPNLPILLTVYDHDTFSKDDKMGD 92
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A0D9WUN8_9ORYZ (C2 domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WUN8_9ORYZ)

HSP 1 Score: 57.4 bits (137), Expect = 1.610e-6
Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:  421 NLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPLG 645
            NL   D   SDP+VVLRL     +T VK+ + +P W E  T ++ S    +   ++D D+FS DDP+G+  + LG
Sbjct:   60 NLAYRDARGSDPYVVLRLGKQKLKTSVKKRSVNPIWHEELTLSITSPTAPIKLGVFDKDTFSRDDPMGDAEIDLG 134
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A804NVE3_MAIZE (C2 domain-containing protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A804NVE3_MAIZE)

HSP 1 Score: 59.7 bits (143), Expect = 1.780e-6
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  394 VTVTVAAARNLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPL 642
            + +TV    NL   D+++SDP+VVL L G  A++ VK++  +P W E    ++      L  +++DHD+FS+DD +GE  + L
Sbjct:  108 LNITVVKGTNLAVRDMLTSDPYVVLTLGGQKAQSTVKKSDLNPVWNEMLKISVPRNYGPLKLEVYDHDTFSADDIMGEAEIDL 190
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A394DE16_LUPAN (C2 domain-containing protein n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A394DE16_LUPAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.990e-6
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  421 NLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPL 642
            NL   D+ SSDP+V+L++     +TRV +   +P W E  TF++L  +  ++  ++DHD+FS DD +G+  + +
Sbjct:   31 NLAVRDVRSSDPYVLLKMGKQKLKTRVIKKDVNPEWNEDITFSVLDPNLPILLIVYDHDTFSKDDKMGDAEIEI 104
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A0D6QYN2_ARACU (C2 domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QYN2_ARACU)

HSP 1 Score: 57.8 bits (138), Expect = 2.040e-6
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:  400 VTVAAARNLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPL 642
            V V   +NL   D +SSDP+VV++LA    RTRV +   +P W+E  T ++      L  Q+ D D FS D+ LGE  + L
Sbjct:   10 VRVVKGKNLAVGDFLSSDPYVVVKLANQTVRTRVVKKNLNPVWDEELTLSVPYPTPPLKLQVMDKDRFSKDESLGEADLDL 90
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BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A1D6Q972_MAIZE (ADP-ribosylation factor GTPase-activating protein AGD12 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6Q972_MAIZE)

HSP 1 Score: 59.7 bits (143), Expect = 3.060e-6
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:  394 VTVTVAAARNLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPL 642
            + +TV    NL   D+++SDP+VVL L G  A++ VK++  +P W E    ++      L  +++DHD+FS+DD +GE  + L
Sbjct:  187 LNITVVKGTNLAVRDMLTSDPYVVLTLGGQKAQSTVKKSDLNPVWNEMLKISVPRNYGPLKLEVYDHDTFSADDIMGEAEIDL 269
[Close]
BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Match: A0A394DE78_LUPAN (C2 domain-containing protein n=4 Tax=Lupinus TaxID=3869 RepID=A0A394DE78_LUPAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.740e-6
Identity = 26/74 (35.14%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  421 NLRRADIVSSDPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDSFSSDDPLGEVVVPL 642
            NL   D+ SSDP+V+L++     +TRV +   +P W E  TF++L  +  ++  ++DHD+FS DD +G+  + +
Sbjct:   31 NLAVRDVRSSDPYVLLKMGKQKLKTRVIKKDVNPEWNEDITFSVLDPNLPILLIVYDHDTFSKDDKMGDAEIEI 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMG6_9STRA1.080e-2434.44C2 domain-containing protein n=1 Tax=Tribonema min... [more]
A2GAK4_TRIVA6.500e-940.48C2 domain containing protein n=1 Tax=Trichomonas v... [more]
UPI0009E4221C2.700e-743.48GTPase activating protein 1-like n=1 Tax=Phalaenop... [more]
A0A1J7G6H5_LUPAN1.320e-639.13C2 domain-containing protein n=2 Tax=Lupinus TaxID... [more]
A0A0D9WUN8_9ORYZ1.610e-638.67C2 domain-containing protein n=1 Tax=Leersia perri... [more]
A0A804NVE3_MAIZE1.780e-636.14C2 domain-containing protein n=3 Tax=Zea mays TaxI... [more]
A0A394DE16_LUPAN1.990e-635.14C2 domain-containing protein n=2 Tax=Lupinus angus... [more]
A0A0D6QYN2_ARACU2.040e-639.51C2 domain-containing protein n=2 Tax=Araucariaceae... [more]
A0A1D6Q972_MAIZE3.060e-636.14ADP-ribosylation factor GTPase-activating protein ... [more]
A0A394DE78_LUPAN3.740e-635.14C2 domain-containing protein n=4 Tax=Lupinus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12139contigP-wetherbeei_contig12139:638..2038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJF0
PFAMsC2,DUF4782,GRAM
Model size1171
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.69e-22
EggNOG OGsKOG1032@1|root,KOG1032@2759|Eukaryota
Descriptionintracellular sterol transport
Cds size1167
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.8608115-CDS-P-wetherbeei_contig12139:637..12191683185938.8608115-CDS-P-wetherbeei_contig12139:637..1219Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12139 638..1219 +
1683185938.8714118-CDS-P-wetherbeei_contig12139:1451..20361683185938.8714118-CDS-P-wetherbeei_contig12139:1451..2036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12139 1452..2036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12139.1.1prot_P-wetherbeei_contig12139.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12139 638..2036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12139.1.1

>prot_P-wetherbeei_contig12139.1.1 ID=prot_P-wetherbeei_contig12139.1.1|Name=mRNA_P-wetherbeei_contig12139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=389bp
ASIASLSGFPGRSLSATKRHGSASSLGSSGSRSAAGASGGSGGGGIGGDG
IDAVVCPGMVLILISIRSGAGDEFAVELASLPPVQACHLLQEYSTRERVL
VLADPAPGDDRPDGAAVAAELARGRRTPPYTVTVTVAAARNLRRADIVSS
DPFVVLRLAGAVARTRVKENTRSPTWEETFTFTMLSRDCDLVAQIWDHDS
FSSDDPLGEVVVPLGDSNTFVVNVASRIEAASKKKSTAGGAMAAAAAAEA
NGAAVGAAAGGCGGASQEHDKWWDVEGGSGQLRLRIRIDQNIRLQVLPKE
HRVAAMVLQRAIRAFAARRARQASFCRAQLSAASTGSAPPTAAAAELLKL
GAPARMAPALASVISEIEAAAARRRRPAGGIAAAQPPIT
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mRNA from alignment at P-wetherbeei_contig12139:638..2038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12139.1.1 ID=mRNA_P-wetherbeei_contig12139.1.1|Name=mRNA_P-wetherbeei_contig12139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1401bp|location=Sequence derived from alignment at P-wetherbeei_contig12139:638..2038+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTCCATCGCCTCCCTCTCGGGCTTTCCCGGCCGGTCGTTGTCGGCAAC
AAAGCGGCACGGCAGCGCAAGCAGCCTCGGCAGCAGCGGCAGCCGCAGTG
CTGCCGGCGCTTCCGGCGGCAGCGGCGGCGGCGGCATAGGCGGCGATGGA
ATTGACGCTGTTGTTTGTCCTGGCATGGTGCTAATCCTGATTAGCATCCG
CTCGGGCGCCGGCGACGAATTCGCCGTCGAACTGGCGTCGCTGCCGCCGG
TCCAGGCCTGCCACCTGCTGCAAGAGTATTCTACGAGGGAGCGGGTGCTC
GTGTTGGCCGACCCAGCTCCGGGCGACGACAGGCCCGACGGCGCCGCCGT
GGCGGCGGAGCTAGCGCGAGGCCGCCGCACGCCGCCCTACACTGTCACGG
TGACGGTGGCGGCGGCAAGGAACCTCCGGCGCGCCGACATCGTGTCGAGC
GACCCGTTCGTCGTGCTCCGGCTGGCGGGCGCGGTCGCCCGGACGCGCGT
CAAGGAGAACACGCGGTCGCCGACGTGGGAGGAGACGTTCACCTTCACGA
TGCTATCTCGCGACTGCGATCTCGTGGCGCAGGTGCGTAGGTAGTCTTTC
TTTGGATTGATTTCCACGCAGGTCATGTTGGGTGCGTTTTGCTTTCTGTC
TCCTCTGTACTGCGGTTCTTGCCGCTTGCTACTATCTAAGGAGCCGTGCA
TCAAGGCGCTATTACTAGTACGTGTTCTGGTTTCGTTTCAAGTCTGCTTC
GATGGGTACGCTGTTCTGCTGCGAGTTCTGATTCCTGAAACCCTACGCCC
TGCGCTCATTGCAGATTTGGGACCACGACTCTTTTTCTAGCGACGACCCT
CTGGGCGAAGTCGTCGTGCCGCTCGGCGACAGCAACACTTTCGTAGTAAA
CGTAGCGTCGCGGATTGAGGCCGCCAGTAAAAAGAAGTCGACGGCGGGCG
GAGCAATGGCGGCGGCGGCGGCGGCGGAAGCAAATGGAGCAGCTGTGGGC
GCGGCCGCTGGCGGATGCGGTGGGGCAAGCCAGGAGCACGACAAGTGGTG
GGATGTCGAGGGCGGCAGCGGGCAGCTACGCCTCCGGATACGCATCGACC
AGAACATCAGGCTGCAGGTGCTGCCCAAGGAGCATCGGGTGGCGGCAATG
GTGCTGCAGCGGGCGATTCGGGCCTTTGCGGCGCGGCGGGCGCGGCAGGC
GTCGTTCTGTCGGGCTCAGCTGTCAGCAGCGAGCACAGGCAGCGCGCCGC
CGACTGCGGCGGCGGCTGAGCTCTTGAAGCTGGGAGCTCCCGCACGGATG
GCGCCCGCGCTGGCTTCTGTCATTTCGGAGATCGAGGCGGCGGCGGCGCG
GCGGCGGCGGCCGGCCGGCGGCATTGCTGCTGCGCAGCCGCCAATCACGC
T
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12139:638..2038+

>mRNA_P-wetherbeei_contig12139.1.1 ID=mRNA_P-wetherbeei_contig12139.1.1|Name=mRNA_P-wetherbeei_contig12139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig12139:638..2038+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTCCATCGCCTCCCTCTCGGGCTTTCCCGGCCGGTCGTTGTCGGCAAC
AAAGCGGCACGGCAGCGCAAGCAGCCTCGGCAGCAGCGGCAGCCGCAGTG
CTGCCGGCGCTTCCGGCGGCAGCGGCGGCGGCGGCATAGGCGGCGATGGA
ATTGACGCTGTTGTTTGTCCTGGCATGGTGCTAATCCTGATTAGCATCCG
CTCGGGCGCCGGCGACGAATTCGCCGTCGAACTGGCGTCGCTGCCGCCGG
TCCAGGCCTGCCACCTGCTGCAAGAGTATTCTACGAGGGAGCGGGTGCTC
GTGTTGGCCGACCCAGCTCCGGGCGACGACAGGCCCGACGGCGCCGCCGT
GGCGGCGGAGCTAGCGCGAGGCCGCCGCACGCCGCCCTACACTGTCACGG
TGACGGTGGCGGCGGCAAGGAACCTCCGGCGCGCCGACATCGTGTCGAGC
GACCCGTTCGTCGTGCTCCGGCTGGCGGGCGCGGTCGCCCGGACGCGCGT
CAAGGAGAACACGCGGTCGCCGACGTGGGAGGAGACGTTCACCTTCACGA
TGCTATCTCGCGACTGCGATCTCGTGGCGCAGATTTGGGACCACGACTCT
TTTTCTAGCGACGACCCTCTGGGCGAAGTCGTCGTGCCGCTCGGCGACAG
CAACACTTTCGTAGTAAACGTAGCGTCGCGGATTGAGGCCGCCAGTAAAA
AGAAGTCGACGGCGGGCGGAGCAATGGCGGCGGCGGCGGCGGCGGAAGCA
AATGGAGCAGCTGTGGGCGCGGCCGCTGGCGGATGCGGTGGGGCAAGCCA
GGAGCACGACAAGTGGTGGGATGTCGAGGGCGGCAGCGGGCAGCTACGCC
TCCGGATACGCATCGACCAGAACATCAGGCTGCAGGTGCTGCCCAAGGAG
CATCGGGTGGCGGCAATGGTGCTGCAGCGGGCGATTCGGGCCTTTGCGGC
GCGGCGGGCGCGGCAGGCGTCGTTCTGTCGGGCTCAGCTGTCAGCAGCGA
GCACAGGCAGCGCGCCGCCGACTGCGGCGGCGGCTGAGCTCTTGAAGCTG
GGAGCTCCCGCACGGATGGCGCCCGCGCTGGCTTCTGTCATTTCGGAGAT
CGAGGCGGCGGCGGCGCGGCGGCGGCGGCCGGCCGGCGGCATTGCTGCTG
CGCAGCCGCCAATCACG
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