mRNA_P-wetherbeei_contig1213.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1213.5.1
Unique NamemRNA_P-wetherbeei_contig1213.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1213.5.1 vs. uniprot
Match: A0A355TPV0_9BACT (Uncharacterized protein n=1 Tax=bacterium UBP9_UBA11836 TaxID=2060920 RepID=A0A355TPV0_9BACT)

HSP 1 Score: 169 bits (429), Expect = 3.360e-50
Identity = 79/142 (55.63%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:    1 IQPLAQSNALSCGQTCVAMCVNAITGQHLTDRNIDAKYGFALLTALNDECKNSSYTWMDGGDLSDATWPTVARAL-QQNLPIILGLNGPTFSPSGRGHIITLTALHDQQVSYADPATGTLRTTTIATLQAAPPHPDGKFIFY 423
            ++PLAQ+ ++SCGQT VAM VNA+TGQ+LTD +I+ KYGF LL ALN EC  + Y W DGGDL+  +W  +   + Q+  P+I+ LNGP FSPSGRGHI+T+       V+ ADPATG LRTTT   +  AP HPDG F+FY
Sbjct:   92 VKPLAQNTSVSCGQTSVAMAVNALTGQNLTDYDINNKYGFELLNALNSECSKAGYNWKDGGDLNAGSWELIDHKVNQEKTPVIVALNGPEFSPSGRGHIVTIVKTEGDTVTIADPATGELRTTTKQAMNTAPQHPDGNFVFY 233
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BLAST of mRNA_P-wetherbeei_contig1213.5.1 vs. uniprot
Match: A0A1V5PJI0_9BACT (Uncharacterized protein n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PJI0_9BACT)

HSP 1 Score: 163 bits (413), Expect = 5.710e-48
Identity = 75/144 (52.08%), Postives = 104/144 (72.22%), Query Frame = 1 
Query:    1 IQPLAQSNALSCGQTCVAMCVNAITGQHLTDRNIDAKYGFALLTALNDECKNSSYTWMDGGDLSDATWPTVARALQ-QNLPIILGLNGPTFSPSGRGHIITLTALHDQQVSYADPATGTLRTTTIATLQAAPPHPDGKFIFYLQ 429
            ++PLAQSN++SCGQT VAM VN++TG++LTD +I+ KYGF LL ALN E  +    W DGG++S  +W  + + +  +  P+I+ LNGP FSPSGRGHI+T+  +    VSYADPATG ++TTT   ++ AP HPDG FIF+ +
Sbjct:   82 LKPLAQSNSVSCGQTSVAMAVNSLTGKNLTDMDINGKYGFQLLNALNSETASQGIKWRDGGNISPYSWGLIEQKVNMEKTPVIVALNGPEFSPSGRGHIVTIVKIQGDTVSYADPATGEIKTTTKKAMETAPTHPDGNFIFFAE 225
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BLAST of mRNA_P-wetherbeei_contig1213.5.1 vs. uniprot
Match: A0A7X8XMB0_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMB0_9BURK)

HSP 1 Score: 158 bits (399), Expect = 1.080e-45
Identity = 75/142 (52.82%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:    1 IQPLAQSNALSCGQTCVAMCVNAITGQHLTDRNIDAKYGFALLTALNDECKNSSYTWMDGGDLSDATWPTVARALQ-QNLPIILGLNGPTFSPSGRGHIITLTALHDQQVSYADPATGTLRTTTIATLQAAPPHPDGKFIFY 423
            +Q LAQ+N +SCGQT VAM VNA+TG++L D +I+ +YGF LL ALN E   + + W DGG++S ++W  +   +  +  P+I+GLNG  FSPSGRGHI+T+       V++ADPATGTLRTTT   + +AP HPDG FIFY
Sbjct:   93 LQCLAQNNDISCGQTSVAMAVNALTGKNLRDMDINNRYGFELLNALNSESAAAGFRWRDGGEISASSWELIDHKVNNEKTPVIVGLNGAEFSPSGRGHIVTIVKTEGDTVTFADPATGTLRTTTKQAMNSAPSHPDGNFIFY 234
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BLAST of mRNA_P-wetherbeei_contig1213.5.1 vs. uniprot
Match: A0A1E4EZ15_9BACT (Uncharacterized protein n=1 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4EZ15_9BACT)

HSP 1 Score: 130 bits (326), Expect = 3.530e-35
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 1 
Query:    1 IQPLAQSNALSCGQTCVAMCVNAITGQHLTDRNIDAKYGFALLTALNDECKNSSYTWMDGGDLSDATWPTVARALQ-QNLPIILGLNGPTFSPSGRGHIITLTALHDQQVSYADPATGTLRTTTIATLQAAPPHPDGKFIFY 423
            + P+ Q    S GQT VA+ VN +TG+HL   +I   YG+ LL AL +EC      W+DGG++    W  V   +  + LP+IL LNGP FS SGRGHI+ +  +  ++V++ADPATG +RT+T + +  AP HP G F FY
Sbjct:   55 VMPIPQQTGDSAGQTAVAIAVNCLTGKHLDGEDIYHAYGYELLRALREECPGLQ--WLDGGEIGPDRWELVEHKVNVEGLPVILALNGPEFSVSGRGHIVLVCKVEGEKVTFADPATGNMRTSTRSNINQAPAHPQGNFFFY 194
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1213.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A355TPV0_9BACT3.360e-5055.63Uncharacterized protein n=1 Tax=bacterium UBP9_UBA... [more]
A0A1V5PJI0_9BACT5.710e-4852.08Uncharacterized protein n=1 Tax=bacterium ADurb.Bi... [more]
A0A7X8XMB0_9BURK1.080e-4552.82Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A1E4EZ15_9BACT3.530e-3544.37Uncharacterized protein n=1 Tax=bacterium SCN 62-1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1213contigP-wetherbeei_contig1213:6741..7178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size438
Hectar predicted targeting categoryother localisation
Exons1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.6612132-CDS-P-wetherbeei_contig1213:6740..71781683185938.6612132-CDS-P-wetherbeei_contig1213:6740..7178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1213 6741..7178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1213.5.1prot_P-wetherbeei_contig1213.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1213 6741..7178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1213.5.1

>prot_P-wetherbeei_contig1213.5.1 ID=prot_P-wetherbeei_contig1213.5.1|Name=mRNA_P-wetherbeei_contig1213.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
IQPLAQSNALSCGQTCVAMCVNAITGQHLTDRNIDAKYGFALLTALNDEC
KNSSYTWMDGGDLSDATWPTVARALQQNLPIILGLNGPTFSPSGRGHIIT
LTALHDQQVSYADPATGTLRTTTIATLQAAPPHPDGKFIFYLQHR*
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mRNA from alignment at P-wetherbeei_contig1213:6741..7178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1213.5.1 ID=mRNA_P-wetherbeei_contig1213.5.1|Name=mRNA_P-wetherbeei_contig1213.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:6741..7178+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCAGCCCCTGGCCCAAAGCAACGCCCTCTCCTGCGGACAGACCTGTGT
GGCCATGTGCGTCAATGCCATCACCGGCCAGCACCTGACCGACCGGAACA
TCGACGCCAAATATGGCTTTGCTCTCCTCACCGCCCTCAACGACGAGTGC
AAAAACAGCAGCTACACCTGGATGGACGGCGGCGACCTCAGCGACGCTAC
CTGGCCCACCGTAGCTCGAGCTCTCCAGCAAAATTTACCCATCATCCTCG
GCCTCAACGGACCCACATTTTCTCCCAGCGGCCGCGGACACATCATCACC
CTGACCGCCCTCCACGACCAGCAGGTGAGCTACGCCGACCCCGCCACGGG
CACGCTGCGCACCACGACCATCGCCACCCTCCAGGCTGCCCCACCGCACC
CGGACGGCAAATTCATCTTCTACCTCCAGCACCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1213:6741..7178+

>mRNA_P-wetherbeei_contig1213.5.1 ID=mRNA_P-wetherbeei_contig1213.5.1|Name=mRNA_P-wetherbeei_contig1213.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:6741..7178+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCAGCCCCTGGCCCAAAGCAACGCCCTCTCCTGCGGACAGACCTGTGT
GGCCATGTGCGTCAATGCCATCACCGGCCAGCACCTGACCGACCGGAACA
TCGACGCCAAATATGGCTTTGCTCTCCTCACCGCCCTCAACGACGAGTGC
AAAAACAGCAGCTACACCTGGATGGACGGCGGCGACCTCAGCGACGCTAC
CTGGCCCACCGTAGCTCGAGCTCTCCAGCAAAATTTACCCATCATCCTCG
GCCTCAACGGACCCACATTTTCTCCCAGCGGCCGCGGACACATCATCACC
CTGACCGCCCTCCACGACCAGCAGGTGAGCTACGCCGACCCCGCCACGGG
CACGCTGCGCACCACGACCATCGCCACCCTCCAGGCTGCCCCACCGCACC
CGGACGGCAAATTCATCTTCTACCTCCAGCACCGCTGA
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