mRNA_P-wetherbeei_contig1213.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1213.1.1
Unique NamemRNA_P-wetherbeei_contig1213.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A564Q3K0_9EURY (Putative tyrosine recombinase XerC-like protein n=1 Tax=Candidatus Methanolliviera sp. GoM_asphalt TaxID=2588692 RepID=A0A564Q3K0_9EURY)

HSP 1 Score: 175 bits (444), Expect = 1.130e-51
Identity = 95/191 (49.74%), Postives = 132/191 (69.11%), Query Frame = 1
Query:   13 KKTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQG----DQGPEAVVFDLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVAVHRSLEQYEQHHQLS 573
            K  LPA  TREE ++LL A     +  PR+RLI+R LYATGIR+ EL  LKF DI Y+ Q++FIR+GKG KDRYV AD++T  +LK+WQ     D+  E  V  +  RQI R+V + G  TG++QKY AM+R  S HSFRHA+ATH +ENG+ LF +K+L+GH +L+ TE YI   + ++ ++Y++ + LS
Sbjct:   61 KHKLPAILTREECKKLLNA-FKKGKKAPRNRLIIRLLYATGIRIEELANLKFCDIFYDNQTIFIREGKGKKDRYVCADLKTFELLKKWQEAGQEDKPLEDSVPGIKIRQIRRIVEKAGDITGISQKYDAMNRIYSAHSFRHAFATHLFENGMSLFAIKKLLGHEFLETTEIYINCTIEQARKEYKETNPLS 250          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A7J2IPS7_9ARCH (Tyrosine recombinase XerA n=3 Tax=Archaea TaxID=2157 RepID=A0A7J2IPS7_9ARCH)

HSP 1 Score: 121 bits (303), Expect = 2.790e-30
Identity = 65/171 (38.01%), Postives = 104/171 (60.82%), Query Frame = 1
Query:   16 KTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVFDLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVA 528
            K LP   TREE+ +LLEA         RD+L++RTLY+TG+R++ELC LK+ DI+     + +R GKG K+R VL D +T+ +LK+++        VF +S R ++R++ +   + G+ +K        +PH+ RH+ ATH  E GVD+  ++ L+GH+ L  T+ Y  V+
Sbjct:  107 KRLPTALTREEVEKLLEAAE-----NDRDKLVVRTLYSTGVRVSELCNLKWDDIDLNSGEVRVR-GKGNKERIVLMDAETLNLLKKYREKHSSSEKVFPVSPRTVQRIIKKLAEKAGIRKK-------CTPHTLRHSLATHLLERGVDIRIIQELLGHSSLSTTQIYTHVS 264          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A7J2LYG7_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Korarchaeota archaeon TaxID=2056630 RepID=A0A7J2LYG7_9ARCH)

HSP 1 Score: 120 bits (302), Expect = 3.590e-30
Identity = 68/183 (37.16%), Postives = 102/183 (55.74%), Query Frame = 1
Query:    7 RAKKTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQG-PEAVVFDLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVAVHRSLEQY 552
            R ++ LP+  TREE+ +L+E+         RDRLILRTLY TG+R++ELC L +  +N E   + +R GKG KDR VL D  T  +L   +   G     VF +S R ++R+V     + G+ +K       ++PH+ RH+ ATH  E G D+  ++ L+GHA L  T+ Y  V+      +Y
Sbjct:   99 RVRRALPSVLTREEVEKLIESAE-----DERDRLILRTLYVTGMRVSELCELTWDRVNLEDGVILVRSGKGGKDRVVLIDADTTKLLADLKASSGNSNGRVFPVSPRTVQRIVKAAAKRAGINKK-------VTPHTLRHSLATHLLEAGADIRAIQELLGHASLSTTQIYTHVSTRHLKREY 269          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A525C2T1_9DELT (Tyrosine recombinase XerC n=1 Tax=Desulfovibrio sp. TaxID=885 RepID=A0A525C2T1_9DELT)

HSP 1 Score: 112 bits (280), Expect = 9.020e-27
Identity = 76/198 (38.38%), Postives = 109/198 (55.05%), Query Frame = 1
Query:   16 KTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIR-DGKGAKDRYVLADVQT----MAMLKQWQGDQGP-EAVVF------DLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVAVHRSLEQYEQHHQLS 573
            KTLP   T EE+  +L  P LT + G RDR +L  LYA G+R++EL  LK   ++++  +  IR  GKG K+R V A  Q     M  L  W+G   P E  VF       L+ + + +LV +Y  + G+ ++       +SPHSFRH++ATH  E G DL T++ L+GHA +D TE Y  +   R  + + QHH  S
Sbjct:  100 KTLPQVLTPEEVSAILLQPKLTTKLGYRDRAMLELLYAAGLRVSELVNLK--PLDFDAHTGLIRVHGKGGKERIVPAHPQAQDFLMEYLNSWRGQFAPVEEFVFLNRSGKGLTRQAVFKLVKRYTAEAGIVKE-------VSPHSFRHSFATHLLEGGADLRTVQVLLGHAVIDTTEIYTHLQGKRLADIHRQHHPRS 288          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: UPI00054F83CD (tyrosine-type recombinase/integrase n=4 Tax=Arenibacter TaxID=178469 RepID=UPI00054F83CD)

HSP 1 Score: 110 bits (276), Expect = 1.460e-26
Identity = 64/176 (36.36%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   16 KTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVFDLSDR-----QIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVA 528
            K LP   +  E+RQLL+AP L      + RL+L  LY  G+R  ELC L+  D++++ + L IR GKG KDRYV      +  LK++   + P    F+  DR     Q+  +  Q+  +    +K++ + +G++PH  RH+YATH  E G+D+ ++K L+GHA++  T  Y+ VA
Sbjct:   66 KKLPVVLSHNEVRQLLKAPRLL-----KHRLVLAMLYGCGLRNFELCNLQLNDLDFDRRMLHIRQGKGRKDRYVPLSQMQIRGLKKYIAAEHPANWCFNGYDRKGNPSQLSTMGVQWIVREA--RKHSGIQKGITPHILRHSYATHLLEMGLDIISVKDLLGHAHIQTTLTYLHVA 234          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A2U1AFI5_9BACT (Phage integrase family protein n=1 Tax=Pontibacter virosus TaxID=1765052 RepID=A0A2U1AFI5_9BACT)

HSP 1 Score: 107 bits (268), Expect = 7.810e-26
Identity = 64/182 (35.16%), Postives = 106/182 (58.24%), Query Frame = 1
Query:    4 LRAKKTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVFDLSDRQIE-----RLVTQYGTQTGLTQ--KYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVA 528
            LR +  LP   ++ E+++LL AP L      + RL+L TLY  G+R +E C LK +D++++ + L +R GKG KDRYV      +  L+++   + P+  +F+   ++ E     R  T  G Q  + +  K A + + L+PH+ RH YATH  E+G+D+ +++ L+GHA +D T  Y+ VA
Sbjct:   14 LRREGKLPVVLSKPEVKRLLSAPKLL-----KHRLLLATLYGCGLRCSEACNLKLSDVDFDRRMLHVRRGKGGKDRYVPLSGHLVRGLEKYIQAECPQQWLFNGQVQENEQGLRDRRYTTAGVQWVVREARKAAGIAKQLTPHTLRHTYATHLLEDGLDIVSIRDLLGHACIDTTMVYLHVA 190          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A5B1CSA3_9BACT (Tyrosine recombinase XerC n=1 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CSA3_9BACT)

HSP 1 Score: 112 bits (279), Expect = 1.610e-25
Identity = 70/191 (36.65%), Postives = 105/191 (54.97%), Query Frame = 1
Query:    7 RAKKTLPATPTREEIRQLLEA-PSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVF------------DLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVAVHRS 540
            R K+  P  P+R+E+R+LL A PSL      RD L+L  +Y TG+R++E+C +++ D++ + Q +FI+ GKG  DR+V    Q   + K           VF             LS R ++RLV       G+T+K       L+PHS RHA+ATH YE+G D+  +++++GH  LD T  YI VA  R+
Sbjct:  138 RKKRHRPVVPSRDEVRRLLAAAPSL------RDTLLLGLMYGTGMRVSEVCQVRWRDVDVDRQQIFIKQGKGNADRHVQLPQQYQDLFKSLLKRSQRNEFVFAGESQSDRRQNRHLSPRTVQRLVKTATKIAGITKK-------LTPHSLRHAFATHSYEDGCDIRRIQKVLGHVRLDTTTIYISVAKERT 315          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A1E4FQ19_9BACT (Uncharacterized protein n=2 Tax=bacterium SCN 62-11 TaxID=1660156 RepID=A0A1E4FQ19_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.990e-25
Identity = 54/141 (38.30%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   97 RDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVFDLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYI 519
            R+ L+ R  YA+ +R++    L + DI Y+ + +F+R  KG  D Y L D  T  ML+ +Q  +     VF+L  RQ+ RL+T+ G ++GL  +   + R +SPH FRHA+ATH YE G+D+  +++L+GH+ L  T +Y+
Sbjct:  247 RELLLGRLFYASAMRVSSAAELCYLDIFYDERRVFLRAAKGDVDLYALIDPGTAEMLRMYQDREPISDSVFELGTRQMNRLITEMGVRSGLQAQAQPLGRSVSPHCFRHAFATHCYEAGMDIREIQKLLGHSSLATTNDYV 387          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A1G0ZMH2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Lentisphaerae bacterium RIFOXYA12_FULL_48_11 TaxID=1798578 RepID=A0A1G0ZMH2_9BACT)

HSP 1 Score: 108 bits (271), Expect = 3.170e-25
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1
Query:   16 KTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVFDLSDRQI------ERLVTQY-GTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVAV 531
            ++LP   T EE+  +L  P +TD  G RDR IL T YATGIR  EL  L+  D+++E   L IR GKG KDR V      +  + ++     P  + F+++ R +      ER    Y GT    T + A + R  S H FRH+ ATH  ENG D+  +++L+GHAYL+ T+ Y EV +
Sbjct:  136 RSLPKALTIEEVNMVLNIPDITDPLGIRDRAILETFYATGIRRRELIQLELEDLDHERGILLIRRGKGGKDRVVPLGESALHWILRYLEKTRP-VLDFNMNQRTLFLTGYGERFSPGYIGTLVRETLRKARIFREGSCHLFRHSCATHMLENGADIRYIQQLLGHAYLNTTQIYTEVDI 313          
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Match: A0A2G9PK61_9ARCH (Integrase n=4 Tax=Candidatus Woesearchaeota TaxID=1801616 RepID=A0A2G9PK61_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 3.660e-25
Identity = 63/180 (35.00%), Postives = 110/180 (61.11%), Query Frame = 1
Query:    7 RAKKTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAELCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEAVVF------DLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYENGVDLFTLKRLMGHAYLDVTENYIEVA 528
            +++K LPA  +++E+R L+ A S T+++    RLI+ TLY+TGIRL+E   L+ +D+    +  ++R GKG+KDR ++   + +  L+ + G+   ++ VF       LS R I+ +V +   + G+ +K       +SPH+ RH++ATH  ENGVD+  ++ L+GHA L  T+ Y +V+
Sbjct:   94 KSEKKLPAVLSKDEVRALI-ANSPTEKS----RLIIETLYSTGIRLSECIMLRISDLELNERIGWVRKGKGSKDRLIILSERLVEHLRHYVGECPEQSFVFPSRSGSQLSSRNIQGIVKRAALRAGIKKK-------VSPHTLRHSFATHLLENGVDIRRIQELLGHANLQTTQIYTKVS 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1213.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A564Q3K0_9EURY1.130e-5149.74Putative tyrosine recombinase XerC-like protein n=... [more]
A0A7J2IPS7_9ARCH2.790e-3038.01Tyrosine recombinase XerA n=3 Tax=Archaea TaxID=21... [more]
A0A7J2LYG7_9ARCH3.590e-3037.16Uncharacterized protein n=1 Tax=Candidatus Korarch... [more]
A0A525C2T1_9DELT9.020e-2738.38Tyrosine recombinase XerC n=1 Tax=Desulfovibrio sp... [more]
UPI00054F83CD1.460e-2636.36tyrosine-type recombinase/integrase n=4 Tax=Arenib... [more]
A0A2U1AFI5_9BACT7.810e-2635.16Phage integrase family protein n=1 Tax=Pontibacter... [more]
A0A5B1CSA3_9BACT1.610e-2536.65Tyrosine recombinase XerC n=1 Tax=Rubripirellula o... [more]
A0A1E4FQ19_9BACT1.990e-2538.30Uncharacterized protein n=2 Tax=bacterium SCN 62-1... [more]
A0A1G0ZMH2_9BACT3.170e-2539.11Uncharacterized protein (Fragment) n=1 Tax=Lentisp... [more]
A0A2G9PK61_9ARCH3.660e-2535.00Integrase n=4 Tax=Candidatus Woesearchaeota TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1213contigP-wetherbeei_contig1213:728..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121011.AUCB01000006_gene1049
PFAMsPhage_int_SAM_4,Phage_integrase
Model size573
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-27
EggNOG OGsCOG4974@1|root,COG4974@2|Bacteria,4NGB5@976|Bacteroidetes,1HXP1@117743|Flavobacteriia,23GMZ@178469|Arenibacter
DescriptionPhage integrase family
Cds size573
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185938.527196-CDS-P-wetherbeei_contig1213:727..13001683185938.527196-CDS-P-wetherbeei_contig1213:727..1300Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1213 728..1300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1213.1.1prot_P-wetherbeei_contig1213.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1213 728..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1213.1.1

>prot_P-wetherbeei_contig1213.1.1 ID=prot_P-wetherbeei_contig1213.1.1|Name=mRNA_P-wetherbeei_contig1213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MLRAKKTLPATPTREEIRQLLEAPSLTDRTGPRDRLILRTLYATGIRLAE
LCALKFADINYEGQSLFIRDGKGAKDRYVLADVQTMAMLKQWQGDQGPEA
VVFDLSDRQIERLVTQYGTQTGLTQKYAAMDRGLSPHSFRHAYATHFYEN
GVDLFTLKRLMGHAYLDVTENYIEVAVHRSLEQYEQHHQLS
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mRNA from alignment at P-wetherbeei_contig1213:728..1300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1213.1.1 ID=mRNA_P-wetherbeei_contig1213.1.1|Name=mRNA_P-wetherbeei_contig1213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:728..1300+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCGCGCCAAGAAGACGCTGCCCGCCACGCCCACCCGCGAGGAAAT CCGCCAGCTCCTGGAAGCGCCGTCGCTCACCGACCGAACAGGACCCCGTG ATCGACTCATCCTGCGCACGCTCTACGCCACGGGCATCCGCCTGGCCGAG CTCTGCGCCCTCAAGTTCGCGGACATCAACTACGAAGGCCAATCGCTCTT CATCCGCGACGGCAAAGGCGCCAAAGATCGCTACGTCCTGGCCGACGTCC AGACGATGGCCATGCTCAAACAGTGGCAGGGCGACCAGGGCCCCGAGGCC GTCGTCTTCGACCTGAGCGACCGCCAAATCGAGCGCCTGGTCACCCAGTA TGGCACCCAGACCGGCCTCACCCAGAAATATGCCGCCATGGACCGGGGCC TATCACCCCACAGCTTTCGCCATGCCTACGCCACCCATTTCTACGAGAAC GGCGTCGACCTGTTCACCCTCAAGCGCCTGATGGGCCACGCCTACCTCGA CGTCACCGAGAACTACATCGAGGTCGCTGTCCATCGCTCCCTCGAGCAAT ACGAGCAGCACCACCAGCTCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1213:728..1300+

>mRNA_P-wetherbeei_contig1213.1.1 ID=mRNA_P-wetherbeei_contig1213.1.1|Name=mRNA_P-wetherbeei_contig1213.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig1213:728..1300+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCGCGCCAAGAAGACGCTGCCCGCCACGCCCACCCGCGAGGAAAT
CCGCCAGCTCCTGGAAGCGCCGTCGCTCACCGACCGAACAGGACCCCGTG
ATCGACTCATCCTGCGCACGCTCTACGCCACGGGCATCCGCCTGGCCGAG
CTCTGCGCCCTCAAGTTCGCGGACATCAACTACGAAGGCCAATCGCTCTT
CATCCGCGACGGCAAAGGCGCCAAAGATCGCTACGTCCTGGCCGACGTCC
AGACGATGGCCATGCTCAAACAGTGGCAGGGCGACCAGGGCCCCGAGGCC
GTCGTCTTCGACCTGAGCGACCGCCAAATCGAGCGCCTGGTCACCCAGTA
TGGCACCCAGACCGGCCTCACCCAGAAATATGCCGCCATGGACCGGGGCC
TATCACCCCACAGCTTTCGCCATGCCTACGCCACCCATTTCTACGAGAAC
GGCGTCGACCTGTTCACCCTCAAGCGCCTGATGGGCCACGCCTACCTCGA
CGTCACCGAGAACTACATCGAGGTCGCTGTCCATCGCTCCCTCGAGCAAT
ACGAGCAGCACCACCAGCTCAGC
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