mRNA_P-wetherbeei_contig121.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig121.7.1
Unique NamemRNA_P-wetherbeei_contig121.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig121.7.1 vs. uniprot
Match: D7FPE6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE6_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 9.200e-9
Identity = 42/89 (47.19%), Postives = 63/89 (70.79%), Query Frame = 2 
Query:   23 QRSRLAEEAAAAAAAEAEQARDDHVVALREVRATASHEREAYAARARADLAAMHVKARRALKKERKKCAAYKSLAVEAHQKATRIRQAL 289
            +R R+AEE  A   AEA+QAR+ HV AL+++R  A  ER+++ AR R +L ++  +A R+++KERK+  AYK+ A+EAHQ+  R RQ L
Sbjct:  514 ERLRMAEEELAGLVAEADQAREAHVSALKDIRRAAGAERDSHVARVRYELESLRRRAHRSVRKERKRSRAYKAQAIEAHQRGQRTRQVL 602
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig121.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPE6_ECTSI9.200e-947.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig121contigP-wetherbeei_contig121:10626..12051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size943
Hectar predicted targeting categoryother localisation
Exons3
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.6430101-UTR-P-wetherbeei_contig121:10625..108081683185937.6430101-UTR-P-wetherbeei_contig121:10625..10808Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig121 10626..10808 -
1683185937.68122-UTR-P-wetherbeei_contig121:11873..120511683185937.68122-UTR-P-wetherbeei_contig121:11873..12051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig121 11874..12051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.6534069-CDS-P-wetherbeei_contig121:10808..112851683185937.6534069-CDS-P-wetherbeei_contig121:10808..11285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig121 10809..11285 -
1683185937.6630054-CDS-P-wetherbeei_contig121:11546..116391683185937.6630054-CDS-P-wetherbeei_contig121:11546..11639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig121 11547..11639 -
1683185937.6723702-CDS-P-wetherbeei_contig121:11861..118731683185937.6723702-CDS-P-wetherbeei_contig121:11861..11873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig121 11862..11873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig121.7.1prot_P-wetherbeei_contig121.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig121 10809..11873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig121.7.1

>prot_P-wetherbeei_contig121.7.1 ID=prot_P-wetherbeei_contig121.7.1|Name=mRNA_P-wetherbeei_contig121.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MHVKARRALKKERKKCAAYKSLAVEAHQKATRIRQALALQLALAQQGAPA
TGGSSAASAGRVANVFDLSRALLRARDLERDAAGNRLSGADAAAALLGAA
FPGGSGGDRSGGGGGRRKESGGGGKPRGDRGDERTSRGSGADVGAGGGGV
AHAGTGGGGIGEASGQSPPGYGGGGGDGRGGIRPRDDRVEARS*
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mRNA from alignment at P-wetherbeei_contig121:10626..12051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig121.7.1 ID=mRNA_P-wetherbeei_contig121.7.1|Name=mRNA_P-wetherbeei_contig121.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1426bp|location=Sequence derived from alignment at P-wetherbeei_contig121:10626..12051- (Phaeothamnion wetherbeei SAG_119_79)
GGAGGATGCAGAGGCGGCGTGCCAGCGCTCCCGGCTGGCAGAGGAGGCGG
CTGCGGCAGCGGCGGCGGAGGCGGAGCAGGCGAGGGACGATCACGTGGTG
GCGCTGCGCGAGGTGCGGGCGACAGCGTCGCACGAGCGGGAGGCGTATGC
GGCACGGGCGCGGGCGGACCTCGCCGCCATGCATGTCAAGGTGCGTGATA
TTCTCAAGGGATTTCGAGGTGGTTCCAAGGGAAGGCTTTGCCCTTTCGTG
CAAGGCTCCTTCCTGCCATGCATTTCTTCGGAAGGTATCAGGTTGATTTA
GTTGTCGCGATCCCCATCATTTTGCCACGCATTGTTTCTGGAGAAGAGGG
GACAGGCCTGGTTTCGGCGATCTCAGTTCCCCACTTCCGTCTGCGCGGTT
TCCGTGCGGCAGGCGCGGCGCGCGCTGAAGAAGGAGAGGAAGAAGTGCGC
CGCCTACAAGTCGCTGGCGGTCGAGGCCCACCAAAAAGCGACCCGTATTC
GCCAGGTATGCCTTAGTGTTCAGTGGCTGCACCACTGGTGGCATCAGCAT
CACTGCTTCCCGCGGCGGCGGCGGTGACAGCGGCGCCAGCGGCGACGGAT
TTGAAGGATGGAAGAGTCACGAGACCGGAATGGTTGAGAGTTTACCGAGG
CACGGCCATCCCTTTTCAGCCAACTCAACTTTTGGCCGCCACGGCATATT
CAGCAGCCAAAATTATCGCTTTTGCCTTGCCGCTCCAACTCCTCCTCTTT
CCTCCTCACCACGCAGGCCCTGGCCCTGCAGCTGGCCCTGGCACAGCAGG
GTGCACCCGCCACGGGAGGATCCTCCGCCGCCTCCGCCGGCCGCGTCGCC
AACGTCTTCGACCTCTCCCGCGCCCTCCTGCGAGCCCGCGACCTTGAACG
GGACGCGGCCGGCAACCGGCTGAGCGGGGCCGACGCCGCCGCAGCGCTCC
TGGGCGCAGCTTTTCCAGGCGGCAGCGGCGGCGATCGCAGCGGCGGCGGC
GGGGGACGCCGAAAAGAAAGCGGGGGAGGAGGCAAGCCTCGCGGCGACCG
GGGCGACGAGCGCACCAGCCGAGGCAGCGGCGCCGATGTCGGTGCCGGTG
GTGGGGGCGTAGCACATGCGGGGACGGGTGGGGGAGGCATTGGGGAGGCG
TCGGGACAGTCGCCGCCGGGATATGGTGGCGGCGGCGGTGACGGCAGAGG
CGGCATTCGTCCGCGTGACGACAGAGTGGAAGCACGGTCGTGAAGATATG
GCCTGCCTTCCCCTTGGCCCAGTTGGTTGAGGTTCAAGGGCAGCAACAGT
ACAAAGGCTGCTGCATGCAGGGCATTACAATTTACATTTCCGCAACCAAA
ATTAAATTGCATGCAATGTGAATTGACTCAGAGAACCGATATTAAATTGC
ATACAAAATGACTGTATAAAAGGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig121:10626..12051-

>mRNA_P-wetherbeei_contig121.7.1 ID=mRNA_P-wetherbeei_contig121.7.1|Name=mRNA_P-wetherbeei_contig121.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig121:10626..12051- (Phaeothamnion wetherbeei SAG_119_79)
ATGCATGTCAAGGCGCGGCGCGCGCTGAAGAAGGAGAGGAAGAAGTGCGC
CGCCTACAAGTCGCTGGCGGTCGAGGCCCACCAAAAAGCGACCCGTATTC
GCCAGGCCCTGGCCCTGCAGCTGGCCCTGGCACAGCAGGGTGCACCCGCC
ACGGGAGGATCCTCCGCCGCCTCCGCCGGCCGCGTCGCCAACGTCTTCGA
CCTCTCCCGCGCCCTCCTGCGAGCCCGCGACCTTGAACGGGACGCGGCCG
GCAACCGGCTGAGCGGGGCCGACGCCGCCGCAGCGCTCCTGGGCGCAGCT
TTTCCAGGCGGCAGCGGCGGCGATCGCAGCGGCGGCGGCGGGGGACGCCG
AAAAGAAAGCGGGGGAGGAGGCAAGCCTCGCGGCGACCGGGGCGACGAGC
GCACCAGCCGAGGCAGCGGCGCCGATGTCGGTGCCGGTGGTGGGGGCGTA
GCACATGCGGGGACGGGTGGGGGAGGCATTGGGGAGGCGTCGGGACAGTC
GCCGCCGGGATATGGTGGCGGCGGCGGTGACGGCAGAGGCGGCATTCGTC
CGCGTGACGACAGAGTGGAAGCACGGTCGTGA
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