mRNA_P-wetherbeei_contig1209.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1209.1.1
Unique NamemRNA_P-wetherbeei_contig1209.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1209.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1209contigP-wetherbeei_contig1209:131..2605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2477
Hectar predicted targeting categoryother localisation
Exons1
Cds size1422
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.556295-CDS-P-wetherbeei_contig1209:130..15521683185937.556295-CDS-P-wetherbeei_contig1209:130..1552Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1209 131..1552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.5661347-UTR-P-wetherbeei_contig1209:1552..26051683185937.5661347-UTR-P-wetherbeei_contig1209:1552..2605Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1209 1553..2605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1209.1.1prot_P-wetherbeei_contig1209.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1209 131..1552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1209.1.1

>prot_P-wetherbeei_contig1209.1.1 ID=prot_P-wetherbeei_contig1209.1.1|Name=mRNA_P-wetherbeei_contig1209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=474bp
MDSRRSAPTYPTKEELTSEWRPVRATLRAYIEWSTVASDDTLEVIRQVLP
DSWERPLMSLPLETWVERPDLDTTAAGKEQVAAAVAAGSWPGGNPAPLPL
PLVRVPSMVLGPTGLGTLRPASCGAAIGGCIGGHRGCPGVLYEVRAPSLP
TVPPAAADKAAAAPAGPLNPFCVCACQVWPAEARPGGPRHGALLRPAALF
LRSKVYGLLPLLSCGQSRRHGTAGPAGRGAAGDTGAEGRRRAGRLMMGRM
SAMYFHRALRMERRLSTPWRLRLEWLWRQRQQGKQVLCPAARAALRVSIP
PVSIWRHPGPAAFPELKWRLLMGKLPLMQCLRQVEDQTCASCGPAAPTET
AEHAFKDCQQAKKMWGRLRRVWETFPMLPAFPVTVGPLLFSSGLGQLAAG
TARVAVALLDTGRHVIWNQRWRARNAVAPRVGGPTVAPCEWQVTTRATDA
LLTELLGSLIWGRFAGMERGKFLQ
back to top

mRNA from alignment at P-wetherbeei_contig1209:131..2605-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1209.1.1 ID=mRNA_P-wetherbeei_contig1209.1.1|Name=mRNA_P-wetherbeei_contig1209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2475bp|location=Sequence derived from alignment at P-wetherbeei_contig1209:131..2605- (Phaeothamnion wetherbeei SAG_119_79)
TTCACGCTGCTGCACCAGCCACACCTCCTGCCAGTACTCGCTCCGCCGAC
GGCTTCCTGACACGCGATGGAGGCACCTGCTGCAAGCGCTAGAGGGGTGG
TACGAGCTTCCGTTCGAGCCGTTTCGGGACACCAAGGCCGAAATGCTCTT
GATGCCGCTGTTTTACAACCGCGACGAGATGACGCTGTCGCTGAAAGACC
AGAGCGGAGCGGTGGCAAAGGCGATGGCGACCGCAGGTATGTTTATGCTG
GCCGACGTGGTGGAGCGGCCGAGCGGTCTACCGCTCTCGACAGCAGCTGA
CGCGGAGGCTTGGCGGGGGGCCCTGCCTTGGCGTAGCTACCAGTTTGGTC
AGACCATCCCGAAGCTGTTGCATGAGTGGGTGCCGTTAGAGGTGCAGGCG
GCGCTCGGCTGGACAGCGGGCGGAAGGACGTCCTCTCTCCTCTCAGCGGT
TGGCCTGGGAGCAGGAGCACCGGTGGTAGGCAGCGGCGACGATGGCGGCG
GTCTCCCAGAAGACCGACGGCTCCTGTGGATGGTGGACCTACCGGCTCTT
GCTATGGGTCCCGTTGTTCCCGCACCCCTCCAGGTAGGCCGCCCTGTCAC
GCTCGGGTTCTGGTTCGGGCTGCAGGATGGCGGGCCGGAAGTGGTGGCGG
GCGATGACGCACGGCAACTGCGGCGGCGGCGGCGGCCGCGGCATTGGCGG
CGGCCGCGGCAGCGGCGGCGGCGGCAGCGGCAGCTTCGCCAACGGCAGTG
GTAATCATGGCGGCACCAACCCTGACCGGGTCTTTGCCAGCAAAGCATTT
GCCTTTCTGGCCGCCCTTCCGGTGGAGGGATGACGGGGCGACGCCGGTCG
AAGGTGAGGCTGTGGCGGTGCGCGGGCCGGTACTGTGGCAGGCAGCGGTG
CGGCTGCGAGTGACCGGCGATGCGCCGGTGGACCGGGCGACGCTGCGCTT
CCTCACGGCGGTTCTCCGCCGGGTGGGCCACGTCCGCACGGCATGGCCGG
CGCTCTCGCTGTAGCTGGTGTGTCCATCACCGACGGTGGCGCGCCTCCTG
GCGATGGACTCGCGACGATCTGCTCCAACCTATCCCACGAAGGAGGAGCT
GACCTCTGAGTGGCGGCCAGTGCGGGCGACTTTGCGGGCGTACATTGAGT
GGTCGACAGTGGCGTCCGACGACACACTGGAGGTTATCCGTCAGGTGCTA
CCTGACTCCTGGGAGCGGCCGCTCATGTCGTTGCCCTTGGAGACGTGGGT
GGAACGTCCAGACTTAGACACGACGGCGGCAGGCAAGGAGCAGGTGGCGG
CGGCAGTGGCCGCGGGCTCTTGGCCAGGTGGCAACCCTGCGCCTCTTCCG
CTGCCGCTAGTCCGTGTCCCGTCAATGGTGCTGGGCCCGACGGGCCTCGG
CACCCTGCGGCCGGCGTCCTGCGGCGCGGCCATCGGCGGCTGCATTGGCG
GCCATCGCGGCTGCCCCGGCGTTCTCTACGAAGTCAGGGCTCCATCGCTG
CCGACCGTGCCGCCTGCTGCTGCTGACAAAGCGGCTGCGGCCCCGGCGGG
GCCGCTGAACCCGTTCTGTGTCTGTGCTTGCCAGGTGTGGCCGGCGGAGG
CCCGGCCGGGTGGCCCACGCCACGGGGCGCTTCTTCGCCCGGCTGCTCTC
TTTCTGCGTTCCAAGGTCTACGGGCTGCTGCCACTGCTCAGCTGTGGCCA
GTCGCGCCGCCACGGGACTGCCGGCCCTGCCGGTCGTGGTGCCGCTGGCG
ACACCGGTGCAGAGGGGCGGCGGCGGGCTGGCAGGCTGATGATGGGGCGG
ATGTCGGCCATGTACTTCCACCGCGCTCTTCGCATGGAGCGGCGGTTGTC
GACGCCGTGGCGCCTACGCCTCGAGTGGTTGTGGCGCCAACGGCAGCAGG
GAAAGCAGGTCCTTTGCCCGGCCGCTCGGGCGGCCCTCCGTGTCTCCATC
CCTCCGGTGTCCATCTGGCGCCATCCCGGGCCCGCGGCGTTCCCTGAGCT
CAAGTGGCGCCTCCTGATGGGCAAGCTGCCGCTGATGCAGTGCCTCCGCC
AGGTGGAGGACCAGACCTGCGCCTCTTGCGGCCCGGCCGCCCCGACCGAG
ACCGCGGAGCATGCGTTCAAGGACTGCCAGCAGGCAAAGAAGATGTGGGG
CCGGTTGCGGAGGGTGTGGGAGACCTTTCCCATGCTGCCCGCTTTTCCGG
TTACGGTGGGGCCGCTGCTTTTCTCGAGCGGCCTCGGCCAGCTGGCCGCG
GGGACGGCGAGAGTGGCTGTGGCGCTGCTGGACACCGGACGACACGTCAT
CTGGAACCAGCGCTGGCGCGCGCGAAATGCCGTTGCCCCCAGGGTGGGTG
GACCGACTGTCGCCCCGTGTGAGTGGCAGGTGACGACGAGAGCGACCGAC
GCGCTCTTGACGGAGCTCCTCGGGAGCTTGATATGGGGCCGGTTCGCCGG
CATGGAGAGAGGGAAGTTCTTGCAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1209:131..2605-

>mRNA_P-wetherbeei_contig1209.1.1 ID=mRNA_P-wetherbeei_contig1209.1.1|Name=mRNA_P-wetherbeei_contig1209.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1422bp|location=Sequence derived from alignment at P-wetherbeei_contig1209:131..2605- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACTCGCGACGATCTGCTCCAACCTATCCCACGAAGGAGGAGCTGAC
CTCTGAGTGGCGGCCAGTGCGGGCGACTTTGCGGGCGTACATTGAGTGGT
CGACAGTGGCGTCCGACGACACACTGGAGGTTATCCGTCAGGTGCTACCT
GACTCCTGGGAGCGGCCGCTCATGTCGTTGCCCTTGGAGACGTGGGTGGA
ACGTCCAGACTTAGACACGACGGCGGCAGGCAAGGAGCAGGTGGCGGCGG
CAGTGGCCGCGGGCTCTTGGCCAGGTGGCAACCCTGCGCCTCTTCCGCTG
CCGCTAGTCCGTGTCCCGTCAATGGTGCTGGGCCCGACGGGCCTCGGCAC
CCTGCGGCCGGCGTCCTGCGGCGCGGCCATCGGCGGCTGCATTGGCGGCC
ATCGCGGCTGCCCCGGCGTTCTCTACGAAGTCAGGGCTCCATCGCTGCCG
ACCGTGCCGCCTGCTGCTGCTGACAAAGCGGCTGCGGCCCCGGCGGGGCC
GCTGAACCCGTTCTGTGTCTGTGCTTGCCAGGTGTGGCCGGCGGAGGCCC
GGCCGGGTGGCCCACGCCACGGGGCGCTTCTTCGCCCGGCTGCTCTCTTT
CTGCGTTCCAAGGTCTACGGGCTGCTGCCACTGCTCAGCTGTGGCCAGTC
GCGCCGCCACGGGACTGCCGGCCCTGCCGGTCGTGGTGCCGCTGGCGACA
CCGGTGCAGAGGGGCGGCGGCGGGCTGGCAGGCTGATGATGGGGCGGATG
TCGGCCATGTACTTCCACCGCGCTCTTCGCATGGAGCGGCGGTTGTCGAC
GCCGTGGCGCCTACGCCTCGAGTGGTTGTGGCGCCAACGGCAGCAGGGAA
AGCAGGTCCTTTGCCCGGCCGCTCGGGCGGCCCTCCGTGTCTCCATCCCT
CCGGTGTCCATCTGGCGCCATCCCGGGCCCGCGGCGTTCCCTGAGCTCAA
GTGGCGCCTCCTGATGGGCAAGCTGCCGCTGATGCAGTGCCTCCGCCAGG
TGGAGGACCAGACCTGCGCCTCTTGCGGCCCGGCCGCCCCGACCGAGACC
GCGGAGCATGCGTTCAAGGACTGCCAGCAGGCAAAGAAGATGTGGGGCCG
GTTGCGGAGGGTGTGGGAGACCTTTCCCATGCTGCCCGCTTTTCCGGTTA
CGGTGGGGCCGCTGCTTTTCTCGAGCGGCCTCGGCCAGCTGGCCGCGGGG
ACGGCGAGAGTGGCTGTGGCGCTGCTGGACACCGGACGACACGTCATCTG
GAACCAGCGCTGGCGCGCGCGAAATGCCGTTGCCCCCAGGGTGGGTGGAC
CGACTGTCGCCCCGTGTGAGTGGCAGGTGACGACGAGAGCGACCGACGCG
CTCTTGACGGAGCTCCTCGGGAGCTTGATATGGGGCCGGTTCGCCGGCAT
GGAGAGAGGGAAGTTCTTGCAG
back to top