mRNA_P-wetherbeei_contig1208.5.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1208.5.3
Unique NamemRNA_P-wetherbeei_contig1208.5.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1208.5.3 vs. uniprot
Match: A0A7W0SFM7_9ACTN (PQQ-dependent sugar dehydrogenase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0SFM7_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 5.100e-9
Identity = 34/82 (41.46%), Postives = 45/82 (54.88%), Query Frame = 3 
Query:  147 RFSPCSDHMFLIDKSGNFIAESTVTDEL-TFKFTIKNMVYEVADHGPTGMLIHPNFPTTPFIYIYYTADPANYWDDSCTLPP 389
            RFSP    +F+ +K G      ++TD   T    +   VY   D G  GM +HPNFPTTP+IY+ YT D   Y +D+C  PP
Sbjct:   69 RFSP-DGRVFVAEKGGTVKVFDSLTDPTPTTAVDLSTEVYAYWDRGLLGMALHPNFPTTPYIYLLYTLDTHPY-NDACPTPP 148
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BLAST of mRNA_P-wetherbeei_contig1208.5.3 vs. uniprot
Match: UPI00069B450A (PA14 domain-containing protein n=1 Tax=Calothrix sp. 336/3 TaxID=1337936 RepID=UPI00069B450A)

HSP 1 Score: 52.8 bits (125), Expect = 3.050e-5
Identity = 27/86 (31.40%), Postives = 44/86 (51.16%), Query Frame = 3 
Query:  150 FSPCSDHMFLIDKSGNFIAESTVTDELTFKFTIKNMVYEVADHGPTGMLIHPNFPTTPFIYIYYTADPANYWDD--SCTLPPDPEG 401
            ++P    MF+  K+G     +  T  +T    I   V +V D G  G+ +HPNF T P++Y+ +T DP   +++    T   DP+G
Sbjct: 1407 WTPDGSRMFIAQKNGVVKVYNYATQAVTDFIDISAQVNDVRDRGLLGLAVHPNFSTNPYVYLGFTYDPPEAYNNINPNTNYDDPDG 1492
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BLAST of mRNA_P-wetherbeei_contig1208.5.3 vs. uniprot
Match: A0A7W1N6C4_9ACTN (PQQ-dependent sugar dehydrogenase (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1N6C4_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 3.690e-5
Identity = 31/93 (33.33%), Postives = 45/93 (48.39%), Query Frame = 3 
Query:  147 RFSPCSDHMFLIDKSGNFIAESTVTDELTFKFT-IKNMVYEVADHGPTGMLIHPNFPTTPFIYIYYTADP-----ANYW------DDSCTLPP 389
            RF+P    +F+ +KSG  +   ++TD     F  ++  V+   D G  GM++ P FPT P+IY+ YT D      A  W       D C  PP
Sbjct:   68 RFAP-DGRIFVAEKSGMILEYDSLTDPTPTVFADLRTEVHNFWDRGLLGMVLDPQFPTRPYIYVLYTYDAPIGGTAPTWGVAGQDSDGCATPP 159
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BLAST of mRNA_P-wetherbeei_contig1208.5.3 vs. uniprot
Match: A0A517MN54_9BACT (Soluble aldose sugar dehydrogenase YliI n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MN54_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 7.600e-5
Identity = 26/93 (27.96%), Postives = 45/93 (48.39%), Query Frame = 3 
Query:   96 TLGTSTLIPSGTRRMEARFSPCSDHMFLIDKSGNFIAESTVTDELTFKFTIKNMVYEVADHGPTGMLIHPNFPTTPFIYIYYTADPANYWDDS 374
            TL   TL     +  +  ++P   +M++ +KSG          + T    I+N V +  D G   + +HP+F   P++Y+ YT DP   +D+S
Sbjct:  982 TLVGETLFAELNQPTDIDWNPDGTNMYISEKSGLIKVSRNGELQATPFVDIRNQVNDTRDRGLLDIAVHPDFENNPYVYLLYTYDPPEVYDNS 1074
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1208.5.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7W0SFM7_9ACTN5.100e-941.46PQQ-dependent sugar dehydrogenase n=1 Tax=Acidimic... [more]
UPI00069B450A3.050e-531.40PA14 domain-containing protein n=1 Tax=Calothrix s... [more]
A0A7W1N6C4_9ACTN3.690e-533.33PQQ-dependent sugar dehydrogenase (Fragment) n=1 T... [more]
A0A517MN54_9BACT7.600e-527.96Soluble aldose sugar dehydrogenase YliI n=1 Tax=Ro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1208contigP-wetherbeei_contig1208:5386..6366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121272.KB903249_gene1521
PFAMsBig_5,CarboxypepD_reg,F5_F8_type_C,GSDH,PA14,PKD
Model size420
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons4
Evalue4.35e-06
EggNOG OGsCOG1404@1|root,COG2133@1|root,COG3291@1|root,COG1404@2|Bacteria,COG2133@2|Bacteria,COG3291@2|Bacteria,2GJFY@201174|Actinobacteria,4DASA@85008|Micromonosporales
DescriptionRepeats in polycystic kidney disease 1 (PKD1) and other proteins
Cds size405
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.100016-CDS-P-wetherbeei_contig1208:5385..54461683185937.100016-CDS-P-wetherbeei_contig1208:5385..5446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 5386..5446 -
1683185937.1094432-CDS-P-wetherbeei_contig1208:5594..56731683185937.1094432-CDS-P-wetherbeei_contig1208:5594..5673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 5595..5673 -
1683185937.117366-CDS-P-wetherbeei_contig1208:5957..60211683185937.117366-CDS-P-wetherbeei_contig1208:5957..6021Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 5958..6021 -
1683185937.1253319-CDS-P-wetherbeei_contig1208:6151..63521683185937.1253319-CDS-P-wetherbeei_contig1208:6151..6352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1208 6152..6352 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185937.133179-UTR-P-wetherbeei_contig1208:6352..63661683185937.133179-UTR-P-wetherbeei_contig1208:6352..6366Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1208 6353..6366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1208.5.3prot_P-wetherbeei_contig1208.5.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1208 5386..6352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1208.5.3

>prot_P-wetherbeei_contig1208.5.3 ID=prot_P-wetherbeei_contig1208.5.3|Name=mRNA_P-wetherbeei_contig1208.5.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MRAFIGALGSALFFRDAGAATVISELFTLGTSTLIPSGTRRMEARFSPCS
DHMFLIDKSGNFIAESTVTDELTFKFTIKNMVYEVADHGPTGMLIHPNFP
TTPFIYIYYTADPANYWDDSCTLPPDPEGFSYCNV
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mRNA from alignment at P-wetherbeei_contig1208:5386..6366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1208.5.3 ID=mRNA_P-wetherbeei_contig1208.5.3|Name=mRNA_P-wetherbeei_contig1208.5.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig1208:5386..6366- (Phaeothamnion wetherbeei SAG_119_79)
CGACGACCTCGAGAATGAGGGCCTTCATTGGCGCTTTGGGCTCCGCCCTC
TTCTTTCGTGATGCCGGCGCTGCAACCGTCATAAGTGAGTTGTTCACGCT
GGGAACCTCGACGCTGATTCCGTCGGGAACTAGACGCATGGAGGCAAGGT
TCTCTCCGTGCTCAGACCACATGTTCCTCATCGACAAAAGCGGAAACTTC
ATCGCTGAGTCGACTGTGAGTTAGAATGATGGCTTTTTGGCCTGGGTGTC
AGTCCTTGCCCCTCTCCATGCTGTCAGTCCTTGCCCCTCTCCATCTTCCT
ACCAATTTGTGACCCCATACTCCTGCTGACCTGCCACCGCCGTAGGTGAC
GGATGAACTGACCTTCAAATTTACCATCAAAAACATGGTTTACGAGGTCG
CCGACCATGGTACGCTTTCGCTGTGTGACGTTTTTGCTATGGTCGAGGAA
TTGAAGGGAAAACTTGGGGTTTCTCGCAGGCTTGTACATTGTGGTGCTCT
CTTTGCTGCTCAAAGCAATGGGCAAGCATCTTTTCTCACGCTTTTTTCAT
GCATCGCGCGGATGCTTCTGCCGGCGTGACCGCGCTCATTGCTGCCGCCC
TTGTCGCCGCCCACTGGCTTCGCTGCCGTTGCCGCTGCCGCACCTGCTCC
TTTGTCGCCGGTGCCTTCCATCTTTTCCTTCGGCTGGTGCTAGGCCCCAC
GGGTATGCTGATCCACCCGAACTTCCCGACCACGCCGTTCATCTACATAT
ACTACACCGCTGATCCGGCCAAGTGAGTCATTTTCTCTTCTTCTTTCAAC
GTCTTTGCCTCTCCTTTTCTGTTTTCATGTCGGAGAAGTCCGCAGCGCGC
CCGCTCGTAACGCAAAAAGCTTGCCATCGGCAATCTTGCACTGTCGGCCA
CCGCCACTGCTCCCCGGCAGCTACTGGGATGACTCGTGCACGCTGCCGCC
GGATCCCGAGGGCTTCAGCTACTGCAACGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1208:5386..6366-

>mRNA_P-wetherbeei_contig1208.5.3 ID=mRNA_P-wetherbeei_contig1208.5.3|Name=mRNA_P-wetherbeei_contig1208.5.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig1208:5386..6366- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGGCCTTCATTGGCGCTTTGGGCTCCGCCCTCTTCTTTCGTGATGC
CGGCGCTGCAACCGTCATAAGTGAGTTGTTCACGCTGGGAACCTCGACGC
TGATTCCGTCGGGAACTAGACGCATGGAGGCAAGGTTCTCTCCGTGCTCA
GACCACATGTTCCTCATCGACAAAAGCGGAAACTTCATCGCTGAGTCGAC
TGTGACGGATGAACTGACCTTCAAATTTACCATCAAAAACATGGTTTACG
AGGTCGCCGACCATGGCCCCACGGGTATGCTGATCCACCCGAACTTCCCG
ACCACGCCGTTCATCTACATATACTACACCGCTGATCCGGCCAACTACTG
GGATGACTCGTGCACGCTGCCGCCGGATCCCGAGGGCTTCAGCTACTGCA
ACGTG
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