mRNA_P-wetherbeei_contig12071.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12071.1.1
Unique NamemRNA_P-wetherbeei_contig12071.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA)

HSP 1 Score: 282 bits (721), Expect = 5.930e-88
Identity = 149/274 (54.38%), Postives = 197/274 (71.90%), Query Frame = 2
Query:  116 TLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAA-AAGREPRPLDLSKYRAAEELLPLGMERLKEALE 934
            +LLER RAFHEDIE YE A+I+EL++KPK++K+RV QQHRVA LL +A  RS+ L  +Y+D+D ++K+E+AAMRGRDALK+F +R K + +YHAR+P++ V  GP++  + E +V FSGEEL+GK FDLH L+ARW+N PQC DK+LDY  +LA L+   +    A++++G        Y  YV DL AYL GFL RTQPLVD  ++  EA  EF+  W AG+  GWP V+ AA   AAA   G   R LDLS Y AAE+L+PLG++RLKEALE
Sbjct:    2 SLLERARAFHEDIETYEMAIIKELEAKPKTNKERVYQQHRVANLLSQAVARSKELDAIYEDKDDSMKQEVAAMRGRDALKNFYDRAKSSWSYHARYPDLPVNTGPNIDEEKEPKVTFSGEELFGKHFDLHDLYARWVNSPQCSDKRLDYGAYLAGLAALGDVPERAKRSKG--------YAGYVADLEAYLRGFLARTQPLVDADEIVKEAEAEFDKAWEAGRVKGWPRVSKAAPHKAAAPGGGLTARHLDLSLYHAAEDLMPLGLDRLKEALE 267          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI)

HSP 1 Score: 280 bits (715), Expect = 4.440e-87
Identity = 150/283 (53.00%), Postives = 193/283 (68.20%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAA-------AAAGREPRPLDLSKYRAAEELLPLGMERLKEALE 934
            MSS+LLER R FHED+E YER +I++L++KP++ K+RV QQHR+A L D + ERS+GLH++Y+D DG+++EE+A+MRG+  + +F +R KET +YH  HP + V  GP+L  + E +V FSGEELYGKFFDLHG+F RW+NLPQCKDK+LDY  FL  L G FE +PE EK RG       AY  ++ DL  YL GFL RTQPLVD+ +V  +    FE  W AG  PGW    AA             AAA   PR LDL K+  A+EL  LGM+RLKEAL+
Sbjct:    1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQAL-GRFEDIPEQEKLRGK------AYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAA---PRVLDLKKFHDADELRALGMDRLKEALQ 273          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A4D9DC70_9STRA (Matrin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC70_9STRA)

HSP 1 Score: 188 bits (478), Expect = 5.350e-52
Identity = 119/288 (41.32%), Postives = 168/288 (58.33%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDV------------RAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAAAAGRE-PRPLDLSKYRAAEELLPLGMERLKEAL 931
            MS   LER RA HEDIEAYE A++  L+ KP++ K+RV QQHRV+ L+++   RS+ L  +Y+D  GT+KEE+A +RGRDA  SF  R      YH +HP++ V++ P +  +AE RV FSGEE++GK+ DL      +  LPQ    K DY  +L++L+  F  +P  +K          A+ RYV +L  YL  F++RTQPL++V+++              +A   FEA W AGK PG  PV A    G     G E  + +DL  +R A+EL  +GM+RLK  L
Sbjct:    1 MSGLTLERARANHEDIEAYEAAIVAILEDKPRTAKERVWQQHRVSNLIEQIQGRSKDLEGIYEDLHGTMKEELATLRGRDAFPSFYARVDHAKEYHQKHPDVPVKHHPPVQDEAEPRVCFSGEEVFGKYLDLQASHMEFYALPQTP--KWDYQTYLSRLA-DFSVVPAGKK--------NAAWARYVHNLYNYLLSFIQRTQPLLNVEEILDGNVDGGEEGATKKAEAAFEALWQAGKLPGGWPVPA---QGGGEEKGTENTKEVDLRGFRTAKELEVVGMDRLKAGL 274          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A7S2W2V2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2V2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.370e-51
Identity = 116/276 (42.03%), Postives = 157/276 (56.88%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAAAAGREPRPLDLSKYRAAEELLPLGMERLKEALE 934
            MSSTLLE+ R   E  EAYE+A+ E+L SKPK+ KQ+V QQH +A L+    ++S    ++ KD DG+ KEE+  M+G +A  SF E  K+T  Y+ R PNI+ Q    L  D E    FSGEE++GK+ DLH L  R  N+ Q      +YLD+LA  S  F  +P   K     GA   AY  Y+ DL  YLE F +R QPLVD   + +E    F+  W  G  PGW    +A    A+ +     RP+D+S   +A++L  LG++RLKE LE
Sbjct:    1 MSSTLLEQARQALEYSEAYEKAIGEQLSSKPKTTKQQVWQQHHIANLMTCIKKQSGTALEVVKDGDGSFKEELETMKGANAFGSFYESLKQTREYYMRFPNIKPQQALSLEADMECTTVFSGEEVFGKYLDLHALHERSCNMKQFGPT--EYLDYLAAFS-DFSKVPSGAKM----GA---AYAEYLKDLLDYLESFFQRAQPLVDFASISSERSTAFQEAWEKGTVPGWS-AGSAGTEAASTSNTAAKRPVDMSSMHSAQDLEALGLQRLKEGLE 265          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A7S2W3N3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3N3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 6.950e-50
Identity = 116/276 (42.03%), Postives = 157/276 (56.88%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAAAAGREPRPLDLSKYRAAEELLPLGMERLKEALE 934
            MSSTLLE+ R   E  EAYE+A+ E+L SKPK+ KQ+V QQH +A L+    ++S    ++ KD DG+ KEE+  M+G +A  SF E  K+T  Y+ R PNI+ Q    L  D E    FSGEE++GK+ DLH L  R  N+ Q      +YLD+LA  S  F  +P   K     GA   AY  Y+ DL  YLE F +R QPLVD   + +E    F+  W  G  PGW    +A    A+ +     RP+D+S   +A++L  LG++RLKE LE
Sbjct:    1 MSSTLLEQARQALEYSEAYEKAIGEQLSSKPKTTKQQVWQQHHIANLMTCIKKQSGTALEVVKDGDGSFKEELETMKGANAFGSFYESLKQTREYYMRFPNIKPQQALSLEADMECTTVFSGEEVFGKYLDLHALHERSCNMKQFGPT--EYLDYLAAFS-DFSKVPSGAKM----GA---AYAEYLKDLLDYLESFFQRAQPLVDFASISSERSTAFQEAWEKGTVPGWS-AGSAGTEAASTSNTAAKRPVDMSSMHSAQDLEALGLQRLKEGLE 265          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A6G0X0B1_9STRA (C2H2-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0B1_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.960e-47
Identity = 102/252 (40.48%), Postives = 145/252 (57.54%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLP----------------------QCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGW 796
            MSS  LE  R+ HEDIE+YERA++  L  KP++H+ RVL  H+++ALLD    RS+    LYKDE+GT+KEEI  M GR    SF ++ K   ++H ++PN+QV + P L    E  + FSGEE +GK+ DLH  + +++NLP                      + K    DY+ +L+++ G F  + +  K      A R  Y  Y+ DL AYL+GF RRTQPLVD+ DV +E   +FE +WA  +  GW
Sbjct:    1 MSSHTLELIRSAHEDIESYERAIVAILSEKPRNHRARVLHGHKISALLDCVTVRSQETLKLYKDEEGTMKEEIDTMHGRTIFTSFYDQLKGIRDFHRKYPNVQVTHEPSLDHIMEPDIPFSGEERFGKYLDLHAFYTQYLNLPLFQKVNKKAAADTSNAHRGRTPEYKQVHADYITYLSRI-GDFTKIAQRAKL-----ADR-RYDAYLTDLLAYLQGFYRRTQPLVDLDDVISETNAKFEKDWALHQVRGW 245          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A024UI91_9STRA (C2H2-type domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI91_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.550e-47
Identity = 105/252 (41.67%), Postives = 142/252 (56.35%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLP--QCKDKKL--------------------DYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGW 796
            MSS  LE+ RA HEDIE YERA++  L  KP++H+ RVL  H+V+ LLD    RS     LYKDE+GTLKEEI  M GR    SF ++ K   ++H ++ NIQV + P L       ++FSGEE +GK+ DLH  + +++NLP  Q  +KK                     DY+ +L+++ G F  +P+  K       G   Y  Y+ DL AYL  F RRTQPLVDV DV  E +  F+ +WAA +  GW
Sbjct:    1 MSSHTLEQIRAAHEDIETYERAIVSILSEKPRNHRARVLHGHKVSNLLDCVTVRSADALKLYKDEEGTLKEEIDTMHGRTIFTSFYDQLKAMRDFHRKYTNIQVSHEPALDHVMNPEISFSGEERFGKYLDLHAFYTQYLNLPLFQTVNKKAAADTANVVRGRTPEYKQVHADYITYLSRV-GDFTKIPQRAKL------GDQRYETYLKDLVAYLLSFYRRTQPLVDVDDVMQETKVTFDKDWAARRVRGW 245          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A485LPB3_9STRA (Aste57867_23637 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPB3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.550e-47
Identity = 102/252 (40.48%), Postives = 143/252 (56.75%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLP--QCKDKKL--------------------DYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGW 796
            MSS  LE  R+ HED+E+YERA++  L  KP++H+ RVL  H+V+ALLD    RS     LYKDE+GT+KEEI  M GR    SF ++ K   ++H ++PNIQV + P L    E  + FSGEE +GK+ DLH  + +++NLP  Q  +KK                     DY+ +L ++ G F  + +  K           Y  Y+ +L AYL GF RRTQPLVD+ DV +E + +FE +WA  +  GW
Sbjct:    1 MSSHTLELIRSAHEDVESYERAIVAILNEKPRNHRTRVLHGHKVSALLDSVTVRSSETLKLYKDEEGTMKEEIDMMHGRTIFTSFYDQLKGIRDFHRKYPNIQVTHEPKLDHIMEPEIPFSGEERFGKYLDLHAFYTQYLNLPLFQTVNKKAAADTLTAQRGRTPEYKQVHADYITYLGRV-GDFAKISQRAKLADQ------RYDTYLRELLAYLSGFYRRTQPLVDLDDVLSETKAKFEKDWALHRVRGW 245          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A2P6U481_CHLSO (Splicing factor 3A subunit 3 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U481_CHLSO)

HSP 1 Score: 171 bits (434), Expect = 7.080e-46
Identity = 121/282 (42.91%), Postives = 160/282 (56.74%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPK-SHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMR--GRD-ALKSFGERTKETLNYHARHPN---IQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAAAAGREPRPLDLSKYRAAEELLPLGMERLKEAL 931
            M+STLLE TR  H+D+E  ER ++++  ++P  SHK ++LQ HRV A+LD   ERSR L  +Y DEDG  KEEIA +R  G D    +F ER KE   YH + PN    + +N   L  +A A V FSGEE  G+F DLH LF  + N      K++DY  ++  ++  FEA+P A++       GR  Y  Y+  L AYLE F  RTQPL  +     +   EF  +W AG+  GW       + GAAAAA      LDL  + +A+EL  LG ERLKEAL
Sbjct:    1 MASTLLEETRQAHDDVERLERLIVKDFATQPAGSHKDKLLQSHRVRAMLDSIQERSRKLIRIYDDEDGARKEEIAQLRLGGADNVFSNFYERLKEVREYHRKFPNDDLTEAENDEALLSEAPA-VPFSGEEAMGRFLDLHELFHTYTNSKF--GKQVDYYTYVCSIA-EFEAIPRAQRL------GR-PYREYLQALVAYLESFYERTQPLSQLSRQYEKLEAEFAEKWQAGQVAGWEDRGEGGS-GAAAAADGSSGALDLDAFDSADELEMLGAERLKEAL 270          
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Match: A0A087SEV3_AUXPR (Splicing factor 3A subunit 3 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SEV3_AUXPR)

HSP 1 Score: 165 bits (417), Expect = 6.100e-44
Identity = 111/273 (40.66%), Postives = 148/273 (54.21%), Query Frame = 2
Query:  107 MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDEAAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHPNIQVQNGPD---LALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKLDYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRRTQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAAAAGREPRP---LDLSKYRAAEELLPLG 907
            M++TLLE TR  HED+E  ER ++++ +++ K++K ++LQ HRV  LLD    R+  L D+YKDED + K++IAA+RG D + +F +R KE   YH R P+  +  G     L   AE  VAFSGEE  G++ DLH L A   N      + LDY  ++  L+        A  +R        AY  Y+  L AYLE F  RTQPL D+      A  EFE  WA G  PGW    A    GAAAA GR   P   LDL  + + +EL  LG
Sbjct:    1 MATTLLENTRQQHEDMERLERLIVKDFRTETKTYKDKLLQSHRVRGLLDALQSRAAALVDIYKDEDESRKQDIAALRGADPISTFYDRLKEVRAYHRRFPSEDITEGDGSEALLAAAEPAVAFSGEEALGRYLDLHELHAAHSN-GAFAGQPLDYHTYVLALADWSRVARPARTSR--------AYREYLERLAAYLESFHARTQPLADLDAQMRGAVAEFEEAWARGAVPGWEDRGAG---GAAAAGGRGEVPEGALDLDAFDSVDELELLG 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12071.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CE40_9STRA5.930e-8854.38Matrin-type domain-containing protein n=1 Tax=Trib... [more]
D7FUU5_ECTSI4.440e-8753.00Matrin-type domain-containing protein n=2 Tax=Ecto... [more]
A0A4D9DC70_9STRA5.350e-5241.32Matrin-type domain-containing protein n=3 Tax=Mono... [more]
A0A7S2W2V2_9STRA1.370e-5142.03Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2W3N3_9STRA6.950e-5042.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0X0B1_9STRA1.960e-4740.48C2H2-type domain-containing protein n=1 Tax=Aphano... [more]
A0A024UI91_9STRA3.550e-4741.67C2H2-type domain-containing protein n=2 Tax=Aphano... [more]
A0A485LPB3_9STRA3.550e-4740.48Aste57867_23637 protein n=1 Tax=Aphanomyces stella... [more]
A0A2P6U481_CHLSO7.080e-4642.91Splicing factor 3A subunit 3 n=1 Tax=Chlorella sor... [more]
A0A087SEV3_AUXPR6.100e-4440.66Splicing factor 3A subunit 3 n=2 Tax=Auxenochlorel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12071contigP-wetherbeei_contig12071:2..1586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FUU5
Preferred nameSF3A3
PFAMsDUF3449,PRP9_N,SF3A3,SF3a60_bindingd,Telomere_Sde2_2,zf-C2H2_jaz,zf-met
Model size934
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00443
KEGG koko:K01676,ko:K10777,ko:K12827
KEGG ReactionR00381,R01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko03040,ko03450,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map03040,map03450
KEGG ModuleM00009,M00011,M00173,M00352,M00374
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000389,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045292,GO:0045595,GO:0045694,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0051704,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904,GO:2000026,GO:2000241
Exons3
Evalue4.1e-88
EggNOG OGsCOG5188@1|root,KOG2636@2759|Eukaryota
EC4.2.1.2,6.5.1.1
DescriptionmRNA splicing, via spliceosome
Cds size828
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.8091507-CDS-P-wetherbeei_contig12071:1..621683185936.8091507-CDS-P-wetherbeei_contig12071:1..62Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12071 2..62 -
1683185936.819595-CDS-P-wetherbeei_contig12071:393..8511683185936.819595-CDS-P-wetherbeei_contig12071:393..851Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12071 394..851 -
1683185936.8280041-CDS-P-wetherbeei_contig12071:1171..14801683185936.8280041-CDS-P-wetherbeei_contig12071:1171..1480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12071 1172..1480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.836888-UTR-P-wetherbeei_contig12071:1480..15861683185936.836888-UTR-P-wetherbeei_contig12071:1480..1586Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12071 1481..1586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12071.1.1prot_P-wetherbeei_contig12071.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12071 2..1480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12071.1.1

>prot_P-wetherbeei_contig12071.1.1 ID=prot_P-wetherbeei_contig12071.1.1|Name=mRNA_P-wetherbeei_contig12071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MSSTLLERTRAFHEDIEAYERAVIEELKSKPKSHKQRVLQQHRVAALLDE
AAERSRGLHDLYKDEDGTLKEEIAAMRGRDALKSFGERTKETLNYHARHP
NIQVQNGPDLALDAEARVAFSGEELYGKFFDLHGLFARWINLPQCKDKKL
DYLDFLAQLSGPFEALPEAEKARGGGGAGRGAYGRYVGDLGAYLEGFLRR
TQPLVDVKDVRAEARCEFEAEWAAGKAPGWPPVAAAAAMGAAAAAGREPR
PLDLSKYRAAEELLPLGMERLKEALE
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mRNA from alignment at P-wetherbeei_contig12071:2..1586-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12071.1.1 ID=mRNA_P-wetherbeei_contig12071.1.1|Name=mRNA_P-wetherbeei_contig12071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1585bp|location=Sequence derived from alignment at P-wetherbeei_contig12071:2..1586- (Phaeothamnion wetherbeei SAG_119_79)
TACGAAAATAGTTCCGACCCAGCACAAGGTAGAAAAGAAAGAGTAAGAGA AAAGAACGCTCTCCTTCCTTCCGTGGACTTGCTGGGGCCCAGCATCCGGC AAAAAGATGTCATCGACGCTTCTTGAGCGGACAAGGGCGTTCCACGAGGA CATCGAGGCCTACGAGCGCGCTGTCATTGAGGAGTTGAAAAGCAAGCCAA AGAGCCACAAGCAGCGGGTCTTGCAGCAGCATCGTGTTGCCGCGCTGCTT GATGAAGCGGCGGAGCGATCGCGCGGCCTCCACGATCTCTACAAAGATGA GGATGGCACGCTGAAGGAGGAGATCGCGGCGATGCGGGGGCGCGACGCAT TGAAATCGTTCGGCGAGCGCACGAAAGAGACATTAAACTATCACGCGCGT CATCCCAACATTCAGGTTAGTGGAGGTGTGGTGGTGTGGGAAACTAATCA GCGTTGCATCGCAAAGTTGGGCGGCCTGCACTATGGCCTGCTTGGCGTCG CAAGGAAGCAGATGCTCGCTCGGTTGCAGAGGATGTCGTTCCACTTTCTC TTTGTGTCTTTAGTTCCGTTCTCGCAGACCGTCTTGTGCAGCCTCCAATT TCGTCAACCCGTGCCTGTCTTCCCTCATTGATTACCGACAATGCGACTCA TTCCGCACTTCCGGTACTCAATCGTGTCCTCGCCTAAGAGCAAGTAATAT CCCTCGGTCCACCCCATCCTCTTGCTGAGACGCAGGTCCAAAACGGACCA GATCTGGCCCTAGACGCCGAGGCACGTGTCGCCTTTTCCGGCGAGGAGCT CTACGGCAAGTTCTTTGACCTCCATGGCCTCTTTGCCCGCTGGATCAACC TCCCGCAGTGCAAGGACAAGAAGCTCGACTACCTGGATTTCCTCGCCCAG CTTTCGGGGCCGTTCGAGGCGCTCCCCGAGGCGGAAAAGGCCCGCGGCGG CGGCGGCGCCGGCCGCGGCGCGTACGGCCGCTACGTCGGAGACCTCGGGG CCTACCTGGAAGGGTTCTTGCGGCGGACGCAGCCGCTGGTCGATGTCAAG GACGTGCGGGCGGAGGCGCGGTGCGAGTTTGAGGCTGAGTGGGCGGCCGG CAAGGCGCCCGGTTGGCCGCCGGTCGCGGCGGCGGCGGCAATGGGCGCGG CGGCGGCGGCGGGGCGGGAGCCGCGGCCGCTGGACTTGAGCAAGTGAGTT TTTGTGGAGTGGAGCTGATATGGCTTTGTTTCTTTCTCCGAACGTTGATA GAGAAAGTGTCGCGGGTTGCTGTGACTGTTGCGTATTCTTGTGGCTTGGG AGTTTGGTTTATCGGCAGCTCCATTTCTCATGCCGCCAAAAGTTGCCGTA GCTCTTGTTCGTCTCACGCCACCGTTCTTCCTGATCTGTTCCTTTTGAGA CTGCTTCTGTTGAACCCATTCCTTGTTTATTCAAGGTAACATCTGGAATT AGCAAGTTCAGCCACCGCCAGAAGACTCGGGCCTGTTCTCTAACGGATTC CTCTTTTGCATCTTGTCTGTGCAGGTACCGCGCCGCGGAGGAGCTGCTCC CGCTGGGGATGGAGCGGCTGAAGGAGGCGTTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12071:2..1586-

>mRNA_P-wetherbeei_contig12071.1.1 ID=mRNA_P-wetherbeei_contig12071.1.1|Name=mRNA_P-wetherbeei_contig12071.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig12071:2..1586- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCATCGACGCTTCTTGAGCGGACAAGGGCGTTCCACGAGGACATCGA
GGCCTACGAGCGCGCTGTCATTGAGGAGTTGAAAAGCAAGCCAAAGAGCC
ACAAGCAGCGGGTCTTGCAGCAGCATCGTGTTGCCGCGCTGCTTGATGAA
GCGGCGGAGCGATCGCGCGGCCTCCACGATCTCTACAAAGATGAGGATGG
CACGCTGAAGGAGGAGATCGCGGCGATGCGGGGGCGCGACGCATTGAAAT
CGTTCGGCGAGCGCACGAAAGAGACATTAAACTATCACGCGCGTCATCCC
AACATTCAGGTCCAAAACGGACCAGATCTGGCCCTAGACGCCGAGGCACG
TGTCGCCTTTTCCGGCGAGGAGCTCTACGGCAAGTTCTTTGACCTCCATG
GCCTCTTTGCCCGCTGGATCAACCTCCCGCAGTGCAAGGACAAGAAGCTC
GACTACCTGGATTTCCTCGCCCAGCTTTCGGGGCCGTTCGAGGCGCTCCC
CGAGGCGGAAAAGGCCCGCGGCGGCGGCGGCGCCGGCCGCGGCGCGTACG
GCCGCTACGTCGGAGACCTCGGGGCCTACCTGGAAGGGTTCTTGCGGCGG
ACGCAGCCGCTGGTCGATGTCAAGGACGTGCGGGCGGAGGCGCGGTGCGA
GTTTGAGGCTGAGTGGGCGGCCGGCAAGGCGCCCGGTTGGCCGCCGGTCG
CGGCGGCGGCGGCAATGGGCGCGGCGGCGGCGGCGGGGCGGGAGCCGCGG
CCGCTGGACTTGAGCAAGTACCGCGCCGCGGAGGAGCTGCTCCCGCTGGG
GATGGAGCGGCTGAAGGAGGCGTTGGAG
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