mRNA_P-wetherbeei_contig12059.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12059.2.1
Unique NamemRNA_P-wetherbeei_contig12059.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12059.2.1 vs. uniprot
Match: A0A349B030_9ACTN (FtsX_ECD domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B030_9ACTN)

HSP 1 Score: 158 bits (399), Expect = 4.590e-41
Identity = 103/245 (42.04%), Postives = 132/245 (53.88%), Query Frame = 1 
Query:  211 SGSWAGARTAGDGTILMVLVVGGHPYEAGDACTVEYEPSVVETADAVELTIRGWRPPG-------DVGCDDLGYGRAMTLRLEQPLGTRPLVFLGEPR---PVFDGSALATPTYLPDGWIAGPEGPGYPDPQSAITWSRRWGPLPLPNSADRCTPSDSGIMLNEGPLGSLDGYPHEMGEIDEGTYDVNGATAVW--STMLDHGTVRLTWSTGTRAFMLQSLPACQGDVPPSLDTMLQIARGLVEP 909
            SG   G RT+ DG  L+V  VGG PY  G ACTV Y   V E+A   E+T++ +   G       +V C   GY R++ + L+ PLG R  V   E R    VFDGS LA PT +P+GW    E  G+PDP+SA  W R WG  P P++ D CTPSDS I L +GP    D     +  +   TYDVNGA A +        G V L W T  ++F+L S P+C G+   SLD +L+ AR L  P
Sbjct:  252 SGGLTGTRTSPDGRSLVVTFVGGAPYTPGKACTVAYRAEVTESAG--EVTVQLFSVGGGATADSENVVCTLEGYFRSVEVGLDAPLGDR-TVHEKESRRRLEVFDGSLLAEPTLMPEGWTLLSEQAGFPDPESAAYWQRTWGAEPPPSTGDSCTPSDSPISLTQGPAAGPDRDVSYLRPVS--TYDVNGAPATYYEGGPTTPGQVALIWETAGQSFVLDSGPSCFGEGAASLDRLLKFARALAVP 491
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12059.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A349B030_9ACTN4.590e-4142.04FtsX_ECD domain-containing protein n=1 Tax=Acidimi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12059contigP-wetherbeei_contig12059:809..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size909
Hectar predicted targeting categorysignal peptide
Exons1
Cds size909
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.5119276-CDS-P-wetherbeei_contig12059:808..17171683185936.5119276-CDS-P-wetherbeei_contig12059:808..1717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12059 809..1717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12059.2.1prot_P-wetherbeei_contig12059.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12059 809..1717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12059.2.1

>prot_P-wetherbeei_contig12059.2.1 ID=prot_P-wetherbeei_contig12059.2.1|Name=mRNA_P-wetherbeei_contig12059.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
WPVLVGAAAAAAVIVAVIVVRSSDSDRSKGIVAATSPSVISTPDDTVSTT
TTPAGDQPPHPGDVLGRPLVSGSWAGARTAGDGTILMVLVVGGHPYEAGD
ACTVEYEPSVVETADAVELTIRGWRPPGDVGCDDLGYGRAMTLRLEQPLG
TRPLVFLGEPRPVFDGSALATPTYLPDGWIAGPEGPGYPDPQSAITWSRR
WGPLPLPNSADRCTPSDSGIMLNEGPLGSLDGYPHEMGEIDEGTYDVNGA
TAVWSTMLDHGTVRLTWSTGTRAFMLQSLPACQGDVPPSLDTMLQIARGL
VEP
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mRNA from alignment at P-wetherbeei_contig12059:809..1717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12059.2.1 ID=mRNA_P-wetherbeei_contig12059.2.1|Name=mRNA_P-wetherbeei_contig12059.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig12059:809..1717+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCCGGTGCTGGTCGGCGCCGCTGCCGCGGCGGCGGTGATCGTGGCCGT
CATCGTCGTGCGTTCGTCCGACTCGGATCGGTCGAAGGGCATCGTTGCGG
CAACATCTCCATCCGTCATCAGCACACCGGATGACACGGTGTCGACGACG
ACGACGCCGGCTGGCGACCAGCCACCCCACCCGGGCGACGTTCTGGGCCG
GCCACTGGTCAGCGGTTCGTGGGCCGGGGCGCGAACGGCGGGTGACGGCA
CGATCCTCATGGTGCTCGTCGTCGGTGGCCATCCGTACGAGGCCGGCGAT
GCGTGCACCGTGGAGTACGAGCCGTCGGTCGTCGAGACGGCCGACGCAGT
CGAGCTGACGATCCGTGGCTGGCGCCCGCCCGGCGACGTCGGTTGCGACG
ACCTCGGTTACGGACGTGCGATGACGCTCCGTCTGGAGCAACCACTGGGA
ACCCGTCCCCTGGTCTTCCTCGGTGAGCCGCGGCCCGTCTTCGACGGCTC
CGCCCTCGCCACGCCCACCTACCTGCCGGACGGGTGGATCGCCGGACCCG
AGGGACCCGGCTACCCCGATCCGCAGTCGGCGATCACGTGGAGCCGTCGC
TGGGGTCCGCTCCCGCTGCCGAACAGCGCCGACCGCTGCACGCCGTCGGA
CAGCGGGATCATGCTGAACGAAGGCCCGCTCGGGTCACTCGACGGGTACC
CGCACGAGATGGGTGAGATCGACGAGGGCACCTACGACGTCAACGGCGCC
ACCGCAGTGTGGTCGACGATGCTCGACCACGGCACGGTGCGACTGACCTG
GTCGACCGGGACGCGCGCGTTCATGCTCCAGTCCCTCCCGGCGTGCCAGG
GCGACGTCCCGCCCAGCCTCGACACGATGCTGCAGATCGCCCGCGGGCTC
GTCGAACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12059:809..1717+

>mRNA_P-wetherbeei_contig12059.2.1 ID=mRNA_P-wetherbeei_contig12059.2.1|Name=mRNA_P-wetherbeei_contig12059.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig12059:809..1717+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCCGGTGCTGGTCGGCGCCGCTGCCGCGGCGGCGGTGATCGTGGCCGT
CATCGTCGTGCGTTCGTCCGACTCGGATCGGTCGAAGGGCATCGTTGCGG
CAACATCTCCATCCGTCATCAGCACACCGGATGACACGGTGTCGACGACG
ACGACGCCGGCTGGCGACCAGCCACCCCACCCGGGCGACGTTCTGGGCCG
GCCACTGGTCAGCGGTTCGTGGGCCGGGGCGCGAACGGCGGGTGACGGCA
CGATCCTCATGGTGCTCGTCGTCGGTGGCCATCCGTACGAGGCCGGCGAT
GCGTGCACCGTGGAGTACGAGCCGTCGGTCGTCGAGACGGCCGACGCAGT
CGAGCTGACGATCCGTGGCTGGCGCCCGCCCGGCGACGTCGGTTGCGACG
ACCTCGGTTACGGACGTGCGATGACGCTCCGTCTGGAGCAACCACTGGGA
ACCCGTCCCCTGGTCTTCCTCGGTGAGCCGCGGCCCGTCTTCGACGGCTC
CGCCCTCGCCACGCCCACCTACCTGCCGGACGGGTGGATCGCCGGACCCG
AGGGACCCGGCTACCCCGATCCGCAGTCGGCGATCACGTGGAGCCGTCGC
TGGGGTCCGCTCCCGCTGCCGAACAGCGCCGACCGCTGCACGCCGTCGGA
CAGCGGGATCATGCTGAACGAAGGCCCGCTCGGGTCACTCGACGGGTACC
CGCACGAGATGGGTGAGATCGACGAGGGCACCTACGACGTCAACGGCGCC
ACCGCAGTGTGGTCGACGATGCTCGACCACGGCACGGTGCGACTGACCTG
GTCGACCGGGACGCGCGCGTTCATGCTCCAGTCCCTCCCGGCGTGCCAGG
GCGACGTCCCGCCCAGCCTCGACACGATGCTGCAGATCGCCCGCGGGCTC
GTCGAACCG
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