mRNA_P-wetherbeei_contig12057.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12057.1.1
Unique NamemRNA_P-wetherbeei_contig12057.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12057contigP-wetherbeei_contig12057:806..1474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9305.ENSSHAP00000000440
Preferred nameEAF1
PFAMsEAF
Model size669
Max annot lvl33208|Metazoa
KEGG koko:K15186
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0008023,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009611,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032783,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042060,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043620,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045171,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue0.00033
EggNOG OGsKOG4795@1|root,KOG4795@2759|Eukaryota,38HWP@33154|Opisthokonta,3BI8P@33208|Metazoa,3CWA9@33213|Bilateria,480QE@7711|Chordata,491M9@7742|Vertebrata,3J77W@40674|Mammalia,4K841@9263|Metatheria
DescriptionRNA polymerase II transcription elongation factor
Cds size669
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.446369-CDS-P-wetherbeei_contig12057:805..14741683185936.446369-CDS-P-wetherbeei_contig12057:805..1474Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12057 806..1474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12057.1.1prot_P-wetherbeei_contig12057.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12057 806..1474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12057.1.1

>prot_P-wetherbeei_contig12057.1.1 ID=prot_P-wetherbeei_contig12057.1.1|Name=mRNA_P-wetherbeei_contig12057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
AKAAGAGKAAAAVLGAEIGAAAKAPLVAAKRATARLEALRGSSRFSTAVG
DWEEELEQLPAPLRDSVSLPDPSVSYPVNFDWLAAGNGAAAVVGVSVGAD
APQAYHMRYDFKPASVDWAKKGRYQEGEGGDVEISLPKYVEDGGDTTSSD
DGDSGGAGSSAGRGGGDGCMEIFRGKAAPASDTDYLLIFDEKNKAYTLEK
TAVNVTVKHVGTQQAQPPPPPPK
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mRNA from alignment at P-wetherbeei_contig12057:806..1474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12057.1.1 ID=mRNA_P-wetherbeei_contig12057.1.1|Name=mRNA_P-wetherbeei_contig12057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig12057:806..1474- (Phaeothamnion wetherbeei SAG_119_79)
GCCAAGGCCGCAGGGGCTGGGAAGGCCGCCGCCGCGGTCCTCGGCGCCGA
GATCGGAGCCGCTGCGAAAGCGCCGCTCGTGGCGGCCAAGAGGGCCACCG
CCCGGCTGGAAGCGCTCCGCGGCAGCTCGCGATTCAGCACCGCGGTCGGC
GACTGGGAGGAAGAGTTGGAGCAGCTGCCGGCGCCGCTGCGGGACTCGGT
ATCGCTCCCGGACCCCTCAGTCTCGTATCCGGTGAATTTTGACTGGCTGG
CCGCCGGCAATGGCGCAGCTGCCGTCGTCGGGGTGTCCGTGGGCGCCGAC
GCGCCGCAGGCGTACCACATGCGGTACGATTTCAAGCCCGCGTCTGTCGA
CTGGGCGAAGAAGGGGCGCTACCAGGAAGGCGAGGGCGGCGACGTGGAGA
TCAGCCTGCCCAAGTACGTTGAGGACGGCGGCGACACTACCAGCAGCGAC
GACGGTGACAGCGGCGGCGCTGGCAGCAGCGCCGGCAGGGGCGGCGGGGA
CGGCTGCATGGAGATCTTTCGGGGCAAGGCGGCGCCGGCTTCCGACACAG
ATTATTTGCTCATATTTGATGAGAAAAACAAGGCATACACATTGGAAAAG
ACGGCAGTGAACGTCACGGTGAAGCACGTCGGCACGCAGCAGGCACAGCC
GCCGCCACCACCGCCTAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12057:806..1474-

>mRNA_P-wetherbeei_contig12057.1.1 ID=mRNA_P-wetherbeei_contig12057.1.1|Name=mRNA_P-wetherbeei_contig12057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig12057:806..1474- (Phaeothamnion wetherbeei SAG_119_79)
GCCAAGGCCGCAGGGGCTGGGAAGGCCGCCGCCGCGGTCCTCGGCGCCGA
GATCGGAGCCGCTGCGAAAGCGCCGCTCGTGGCGGCCAAGAGGGCCACCG
CCCGGCTGGAAGCGCTCCGCGGCAGCTCGCGATTCAGCACCGCGGTCGGC
GACTGGGAGGAAGAGTTGGAGCAGCTGCCGGCGCCGCTGCGGGACTCGGT
ATCGCTCCCGGACCCCTCAGTCTCGTATCCGGTGAATTTTGACTGGCTGG
CCGCCGGCAATGGCGCAGCTGCCGTCGTCGGGGTGTCCGTGGGCGCCGAC
GCGCCGCAGGCGTACCACATGCGGTACGATTTCAAGCCCGCGTCTGTCGA
CTGGGCGAAGAAGGGGCGCTACCAGGAAGGCGAGGGCGGCGACGTGGAGA
TCAGCCTGCCCAAGTACGTTGAGGACGGCGGCGACACTACCAGCAGCGAC
GACGGTGACAGCGGCGGCGCTGGCAGCAGCGCCGGCAGGGGCGGCGGGGA
CGGCTGCATGGAGATCTTTCGGGGCAAGGCGGCGCCGGCTTCCGACACAG
ATTATTTGCTCATATTTGATGAGAAAAACAAGGCATACACATTGGAAAAG
ACGGCAGTGAACGTCACGGTGAAGCACGTCGGCACGCAGCAGGCACAGCC
GCCGCCACCACCGCCTAAA
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