mRNA_P-wetherbeei_contig1205.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1205.2.1
Unique NamemRNA_P-wetherbeei_contig1205.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A2A4S9B8_9HYPH ((2Fe-2S)-binding protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4S9B8_9HYPH)

HSP 1 Score: 197 bits (502), Expect = 1.520e-62
Identity = 98/145 (67.59%), Postives = 116/145 (80.00%), Query Frame = 1
Query:    7 LIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLA 441
            L +NG+T+++D+E  MPLLWVLRD L LTGTKFGCG+SACGACTV V+G AVR+C  P S+  G  ITTIEA +     L+ +QQAWI HQ PQCGYCQSG +MAA ALLS N +PTDADIDAAM+N+CRCGTY RIRAAI S+A
Sbjct:    5 LKVNGETRELDIEPDMPLLWVLRDELGLTGTKFGCGVSACGACTVHVNGQAVRTCMLPVSSAQGKEITTIEALSDEEKNLSALQQAWIDHQVPQCGYCQSGMLMAATALLSNNPSPTDADIDAAMTNVCRCGTYPRIRAAIRSVA 149          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A844B3P4_9BURK (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=Caenimonas koreensis DSM 17982 TaxID=1121255 RepID=A0A844B3P4_9BURK)

HSP 1 Score: 195 bits (495), Expect = 1.720e-61
Identity = 101/147 (68.71%), Postives = 114/147 (77.55%), Query Frame = 1
Query:    1 MQLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLA 441
            M+L+ING T   DVE+ MPLLWVLRDVLN+TGTKFGCGI+ACGACTV VDG+AVRSC  PAS+V G  I TIEA      + + +Q AWIA Q PQCGYCQSG +MAA ALL  N  PTDADIDAAM+NICRCGTY R+RAAI   A
Sbjct:    1 MELLINGKTVSADVESEMPLLWVLRDVLNMTGTKFGCGIAACGACTVTVDGLAVRSCVVPASSVVGKKIRTIEALGTPEKI-HPLQAAWIAEQVPQCGYCQSGMLMAAAALLEKNPKPTDADIDAAMTNICRCGTYQRVRAAIKRAA 146          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A4Q7VN14_9BURK (Isoquinoline 1-oxidoreductase alpha subunit n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VN14_9BURK)

HSP 1 Score: 194 bits (492), Expect = 5.410e-61
Identity = 97/143 (67.83%), Postives = 114/143 (79.72%), Query Frame = 1
Query:    7 LIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHS 435
            + +NG  + +DVE  MPLLWVLRD L LTGTKFGCGI+ACGACTV +DGV  RSC+ P +AV G S+ TIE +    ALL ++Q AWIAHQ PQCGYCQSG +MAA ALL+GN  P+DADIDAAMSNICRCGTY R+RAAIH+
Sbjct:    4 ITVNGVERRLDVEPEMPLLWVLRDELGLTGTKFGCGIAACGACTVDIDGVPTRSCAMPVAAVEGKSVRTIEGEP--DALLQRLQAAWIAHQVPQCGYCQSGMLMAARALLAGNPKPSDADIDAAMSNICRCGTYQRVRAAIHA 144          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A3M1Z668_9BACT ((2Fe-2S)-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1Z668_9BACT)

HSP 1 Score: 194 bits (492), Expect = 6.160e-61
Identity = 98/147 (66.67%), Postives = 115/147 (78.23%), Query Frame = 1
Query:    1 MQLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLA 441
            M+L ING T  V+ E+ MPLLWVLRD+LNLTGTK+GCG+SACGACTV++DGVA R+C+ P SA  G  ITTIE     G L + VQ+AWI HQ PQCGYCQSG I+A  ALL+ N  PTD DIDAA++NICRCGTY RIRAAIH+ A
Sbjct:    1 MELKINGKTFPVEAESNMPLLWVLRDILNLTGTKYGCGVSACGACTVMLDGVATRTCTLPLSAAEGKEITTIEGIAQEGQL-SAVQRAWIEHQVPQCGYCQSGMIVATEALLAQNPDPTDEDIDAAITNICRCGTYQRIRAAIHTAA 146          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A1F6VD56_9PROT (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6VD56_9PROT)

HSP 1 Score: 193 bits (490), Expect = 9.890e-61
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = 1
Query:    1 MQLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLA 441
            M L +NG+TK  D E   PLLWVLRD L LTGTKFGCGI+ACGACTVL+DGVA R+C  P SA  G  ITTIE   +    L+ VQQAWI  Q PQCGYCQSG I+AAVALL  N+ P DADIDAAM+NICRCGTY R+RAAIHS A
Sbjct:    1 MTLNVNGETKAADAEPDTPLLWVLRDSLGLTGTKFGCGIAACGACTVLLDGVATRTCVLPVSAAVGKRITTIEG--LGAKTLHVVQQAWIDQQVPQCGYCQSGMILAAVALLERNRRPRDADIDAAMTNICRCGTYPRVRAAIHSAA 145          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A363SK44_9RHOO ((2Fe-2S)-binding protein n=1 Tax=Rhodocyclales bacterium TaxID=2072421 RepID=A0A363SK44_9RHOO)

HSP 1 Score: 193 bits (490), Expect = 9.890e-61
Identity = 95/147 (64.63%), Postives = 115/147 (78.23%), Query Frame = 1
Query:    1 MQLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLA 441
            ++L +NG  ++ DVE  MPLLWVLRD LNLTG K+GCGI  CGACTVLVDG AVR+C+  A+  AG  I TIE  +  G  L++VQQAWI H+ PQCGYCQ+G I++AVALL     PTDADIDAAM+N+CRCGTYGR+RAAIH+LA
Sbjct:    2 LKLNVNGRVREADVEPEMPLLWVLRDHLNLTGAKYGCGIGVCGACTVLVDGAAVRACAVTAAEAAGKRIVTIEGLSEKG--LHRVQQAWIEHEVPQCGYCQTGMILSAVALLEKKPKPTDADIDAAMTNLCRCGTYGRVRAAIHALA 146          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: UPI0008DAE7B2 ((2Fe-2S)-binding protein n=1 Tax=Hyphomonas sp. Mor2 TaxID=1906738 RepID=UPI0008DAE7B2)

HSP 1 Score: 192 bits (489), Expect = 1.550e-60
Identity = 100/149 (67.11%), Postives = 113/149 (75.84%), Query Frame = 1
Query:    4 QLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMS-NICRCGTYGRIRAAIHSLATA 447
            +LI+NG+ + VDV+   PLLWVLR+ L L GTKFGCGI+ CGACTV V+G  VRSCSTP +A  GA +TTIE         + VQQAWI HQ PQCGYCQSGQIM+AVALL  N  PTDADIDAAMS NICRCG YGRIRAAI S A+A
Sbjct:    5 KLIVNGEERSVDVDPSTPLLWVLREQLKLNGTKFGCGIAQCGACTVHVNGTPVRSCSTPVAAADGAEVTTIEGVAGEDGTRHAVQQAWIEHQVPQCGYCQSGQIMSAVALLRDNPNPTDADIDAAMSGNICRCGAYGRIRAAIKSAASA 153          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A521ZWQ5_9BURK ((2Fe-2S)-binding protein n=1 Tax=Aquabacterium sp. TaxID=1872578 RepID=A0A521ZWQ5_9BURK)

HSP 1 Score: 192 bits (489), Expect = 2.070e-60
Identity = 97/145 (66.90%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   13 INGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLATA 447
            +NG    VDVE  MPLLWVLRD L  TGTKFGCGI+ACGACTV +DGVA RSC  P  AV+G S+ TIE+Q     +L ++Q AW+AHQ PQCGYCQSG +MAA ALL  N  PTDADID AM+NICRCGTY R+RAAIHS AT+
Sbjct:    6 LNGQPVSVDVEDDMPLLWVLRDELGHTGTKFGCGIAACGACTVHIDGVATRSCVMPVVAVSGKSVQTIESQ--DDPILKRLQAAWVAHQVPQCGYCQSGMLMAATALLRSNPHPTDADIDGAMTNICRCGTYQRVRAAIHSAATS 148          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A3S0EUB2_9BURK ((2Fe-2S)-binding protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A3S0EUB2_9BURK)

HSP 1 Score: 192 bits (489), Expect = 2.280e-60
Identity = 97/143 (67.83%), Postives = 113/143 (79.02%), Query Frame = 1
Query:   13 INGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLA 441
            +NG    VDVE  MPLLWVLRD L  TGTKFGCGI+ACGACTV +DGVA RSC  P SAVAG ++ TIE++    A+L ++Q AW+A+Q PQCGYCQSG +MAA ALL  N APTDADIDAAM+NICRCGTY R+RAAIH+ A
Sbjct:    6 LNGQPVSVDVEDDMPLLWVLRDELGHTGTKFGCGIAACGACTVHIDGVATRSCVMPVSAVAGKAVQTIESK--DDAILARLQAAWVAYQVPQCGYCQSGMLMAATALLRANPAPTDADIDAAMTNICRCGTYQRVRAAIHAAA 146          
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Match: A0A2A5EJH4_9HYPH ((2Fe-2S)-binding protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EJH4_9HYPH)

HSP 1 Score: 192 bits (487), Expect = 2.920e-60
Identity = 96/149 (64.43%), Postives = 117/149 (78.52%), Query Frame = 1
Query:    1 MQLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVDGVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYCQSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLATA 447
            + + ING  K++DVE  MP+LWVLRD L LTGTKFGCG++ACGACTV V+GVA R+C  P  AV GA ITTIE  + +G  L+ +QQAWI HQ PQCGYCQSG +MA  +LL+ N  P+DA+IDA+++NICRCGTY RIRAAI SLATA
Sbjct:    3 ISVTINGTRKELDVEPDMPVLWVLRDELGLTGTKFGCGVAACGACTVHVNGVATRTCILPIEAVDGAEITTIEGLSPNGVDLSALQQAWIEHQVPQCGYCQSGMLMAVSSLLAENPNPSDAEIDASITNICRCGTYPRIRAAIRSLATA 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1205.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A4S9B8_9HYPH1.520e-6267.59(2Fe-2S)-binding protein n=1 Tax=Rhodobiaceae bact... [more]
A0A844B3P4_9BURK1.720e-6168.712Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A4Q7VN14_9BURK5.410e-6167.83Isoquinoline 1-oxidoreductase alpha subunit n=1 Ta... [more]
A0A3M1Z668_9BACT6.160e-6166.67(2Fe-2S)-binding protein n=1 Tax=Bacteroidetes bac... [more]
A0A1F6VD56_9PROT9.890e-6168.032Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A363SK44_9RHOO9.890e-6164.63(2Fe-2S)-binding protein n=1 Tax=Rhodocyclales bac... [more]
UPI0008DAE7B21.550e-6067.11(2Fe-2S)-binding protein n=1 Tax=Hyphomonas sp. Mo... [more]
A0A521ZWQ5_9BURK2.070e-6066.90(2Fe-2S)-binding protein n=1 Tax=Aquabacterium sp.... [more]
A0A3S0EUB2_9BURK2.280e-6067.83(2Fe-2S)-binding protein n=1 Tax=Burkholderiales b... [more]
A0A2A5EJH4_9HYPH2.920e-6064.43(2Fe-2S)-binding protein n=1 Tax=Rhodobiaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1205contigP-wetherbeei_contig1205:1624..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000001_gene3581
Preferred nameMA20_17490
PFAMsFer2,Fer2_2
Model size450
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07302
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.57e-60
EggNOG OGsCOG2080@1|root,COG2080@2|Bacteria,1RD8C@1224|Proteobacteria,2U6Z6@28211|Alphaproteobacteria
EC1.3.99.16
DescriptionCOG2080 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS CutS homologs
Cds size450
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185936.1207385-CDS-P-wetherbeei_contig1205:1623..20731683185936.1207385-CDS-P-wetherbeei_contig1205:1623..2073Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1205 1624..2073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1205.2.1prot_P-wetherbeei_contig1205.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1205 1624..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1205.2.1

>prot_P-wetherbeei_contig1205.2.1 ID=prot_P-wetherbeei_contig1205.2.1|Name=mRNA_P-wetherbeei_contig1205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MQLIINGDTKDVDVEAGMPLLWVLRDVLNLTGTKFGCGISACGACTVLVD
GVAVRSCSTPASAVAGASITTIEAQTVSGALLNKVQQAWIAHQAPQCGYC
QSGQIMAAVALLSGNQAPTDADIDAAMSNICRCGTYGRIRAAIHSLATA*
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mRNA from alignment at P-wetherbeei_contig1205:1624..2073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1205.2.1 ID=mRNA_P-wetherbeei_contig1205.2.1|Name=mRNA_P-wetherbeei_contig1205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig1205:1624..2073+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACTCATCATCAATGGGGACACCAAAGACGTCGATGTGGAAGCCGG GATGCCTCTGTTATGGGTGCTGCGCGATGTGCTGAACCTGACCGGCACAA AATTTGGTTGCGGTATTTCCGCCTGCGGCGCGTGTACGGTGCTGGTGGAT GGTGTGGCTGTACGGTCCTGTTCCACACCGGCAAGCGCTGTCGCCGGGGC CAGCATCACCACCATCGAGGCGCAAACCGTTTCAGGTGCGCTGCTGAATA AAGTGCAGCAGGCCTGGATCGCGCATCAGGCGCCGCAATGCGGCTATTGC CAGTCCGGCCAGATCATGGCGGCGGTGGCGTTGCTGTCAGGAAATCAGGC TCCGACAGACGCCGATATTGATGCGGCCATGAGCAATATCTGCCGTTGCG GAACCTATGGGCGCATTCGCGCCGCCATTCATTCGCTGGCAACCGCATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1205:1624..2073+

>mRNA_P-wetherbeei_contig1205.2.1 ID=mRNA_P-wetherbeei_contig1205.2.1|Name=mRNA_P-wetherbeei_contig1205.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig1205:1624..2073+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAACTCATCATCAATGGGGACACCAAAGACGTCGATGTGGAAGCCGG
GATGCCTCTGTTATGGGTGCTGCGCGATGTGCTGAACCTGACCGGCACAA
AATTTGGTTGCGGTATTTCCGCCTGCGGCGCGTGTACGGTGCTGGTGGAT
GGTGTGGCTGTACGGTCCTGTTCCACACCGGCAAGCGCTGTCGCCGGGGC
CAGCATCACCACCATCGAGGCGCAAACCGTTTCAGGTGCGCTGCTGAATA
AAGTGCAGCAGGCCTGGATCGCGCATCAGGCGCCGCAATGCGGCTATTGC
CAGTCCGGCCAGATCATGGCGGCGGTGGCGTTGCTGTCAGGAAATCAGGC
TCCGACAGACGCCGATATTGATGCGGCCATGAGCAATATCTGCCGTTGCG
GAACCTATGGGCGCATTCGCGCCGCCATTCATTCGCTGGCAACCGCATAG
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