mRNA_P-wetherbeei_contig12030.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12030.2.1
Unique NamemRNA_P-wetherbeei_contig12030.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig12030.2.1 vs. uniprot
Match: A0A7S2R421_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R421_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.820e-20
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 1 
Query:    4 VPTTPPTTAYELERVWRNIKTRPELLAAYLRTFKPSTFKKVFRQSADADLLSSILATLRDLTAPAD--PVEAVRFLRGLQKAEGFKMMVMVMGDGDRAAVR 300
            VPT PP T  ELERVWR +K  P  LA YL  FK +TFKKVF++S + D++ S+L+  R   A  D  P  AV+ LRGL K +GF M +M++ + D+AAVR
Sbjct: 1245 VPTAPPKTMLELERVWRELKKEPADLAQYLSIFKVNTFKKVFKESINPDIVPSLLSVTRHHLAAPDQAPGAAVKVLRGLAKIQGFSMTLMLLSEEDKAAVR 1345
[Close]
BLAST of mRNA_P-wetherbeei_contig12030.2.1 vs. uniprot
Match: A0A7S3XWR2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWR2_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 2.590e-17
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    4 VPTTPPTTAYELERVWRNIKTRPELLAAYLRTFKPSTFKKVFRQSADADLLSSILATLRDLTAPADPVEAVRFLRGLQKAEGFKMMVMV 270
            VP   P + YELER  RN++  P  LA YLR FK STFKKVF++S + D++SSI   L+D  A  DP  A R L G+ KA+ F M V++
Sbjct:  123 VPERAPRSLYELERECRNLRANPAALARYLRIFKLSTFKKVFKESTNPDVISSIFTALKDHLACEDPEAACRVLTGMSKADNFAMTVLL 211
[Close]
BLAST of mRNA_P-wetherbeei_contig12030.2.1 vs. uniprot
Match: UPI000359C84A (RNA polymerase II-associated protein 3 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359C84A)

HSP 1 Score: 52.4 bits (124), Expect = 1.270e-5
Identity = 28/99 (28.28%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:   16 PPTTAYELERVWRNIKTRPELLAAYLRTFKPSTFKKVFRQSADADLLSSILATLRDLTAPADPVEAVRFLRGLQKAEGFKMMVMVMGDGDRAAVRAILD 312
            PP T+++ +  ++ +K +PE    Y +   P  + K+F QS DAD+L++IL TL       + V+    L  L   + F M  M +   ++  V  ++D
Sbjct:  453 PPQTSFQFQADFKQLKRKPESFFQYFQAIPPDNYPKLFGQSIDADILTTILKTL---ALHPEKVDLYSVLHSLTLVKRFSMTAMFLSRKEKQVVSDLID 548
[Close]
BLAST of mRNA_P-wetherbeei_contig12030.2.1 vs. uniprot
Match: UPI000719DAA1 (RNA polymerase II-associated protein 3-like isoform X1 n=3 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719DAA1)

HSP 1 Score: 51.6 bits (122), Expect = 2.360e-5
Identity = 28/98 (28.57%), Postives = 48/98 (48.98%), Query Frame = 1 
Query:   19 PTTAYELERVWRNIKTRPELLAAYLRTFKPSTFKKVFRQSADADLLSSILATLRDLTAPADPVEAVRFLRGLQKAEGFKMMVMVMGDGDRAAVRAILD 312
            P  + +L+  WR +K     L  Y +  +P+ + ++F Q  +AD+LS I+A LRD     +  +    L GL     F  + M MG  +  A+ A+ +
Sbjct:  405 PANSVQLQLDWRRLKGNSSKLYKYFKRIQPADYPRLFSQFLEADVLSQIIAVLRDFYV-CEKEDVFSVLAGLVHVARFSTIAMFMGSTETKALNALFE 501
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12030.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2R421_9STRA1.820e-2050.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XWR2_HETAK2.590e-1749.44Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000359C84A1.270e-528.28RNA polymerase II-associated protein 3 n=1 Tax=Apl... [more]
UPI000719DAA12.360e-528.57RNA polymerase II-associated protein 3-like isofor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12030contigP-wetherbeei_contig12030:1162..1895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog8128.ENSONIP00000012499
Preferred nameRPAP3
PFAMsRPAP3_C,TPR_1,TPR_11,TPR_2,TPR_7,TPR_8
Model size312
Max annot lvl33208|Metazoa
KEGG rclassRC00045
KEGG koko:K00237
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0010941,GO:0030544,GO:0031072,GO:0032991,GO:0042752,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043523,GO:0043524,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050795,GO:0051879,GO:0060548,GO:0065007,GO:0097255,GO:1901214,GO:1901215,GO:1904059,GO:2000671,GO:2000672
Exons2
Evalue3.06e-09
EggNOG OGsCOG0457@1|root,KOG4648@2759|Eukaryota,38GIQ@33154|Opisthokonta,3BEKH@33208|Metazoa,3CVSY@33213|Bilateria,4812P@7711|Chordata,48XR5@7742|Vertebrata,49WEI@7898|Actinopterygii
DescriptionRNA polymerase II associated protein 3
Cds size312
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.7049885-CDS-P-wetherbeei_contig12030:1161..12241683185935.7049885-CDS-P-wetherbeei_contig12030:1161..1224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12030 1162..1224 +
1683185935.716098-CDS-P-wetherbeei_contig12030:1646..18951683185935.716098-CDS-P-wetherbeei_contig12030:1646..1895Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12030 1647..1895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12030.2.1prot_P-wetherbeei_contig12030.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12030 1162..1895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12030.2.1

>prot_P-wetherbeei_contig12030.2.1 ID=prot_P-wetherbeei_contig12030.2.1|Name=mRNA_P-wetherbeei_contig12030.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
DVPTTPPTTAYELERVWRNIKTRPELLAAYLRTFKPSTFKKVFRQSADAD
LLSSILATLRDLTAPADPVEAVRFLRGLQKAEGFKMMVMVMGDGDRAAVR
AILD
back to top

mRNA from alignment at P-wetherbeei_contig12030:1162..1895+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12030.2.1 ID=mRNA_P-wetherbeei_contig12030.2.1|Name=mRNA_P-wetherbeei_contig12030.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=734bp|location=Sequence derived from alignment at P-wetherbeei_contig12030:1162..1895+ (Phaeothamnion wetherbeei SAG_119_79)
GATGTTCCGACCACGCCGCCCACGACGGCGTACGAGTTGGAGCGGGTCTG
GCGGAACATTAAGGTGCATTTGAGAAGCATGAAAGAGCGGAGACGTGTTT
GGTATTTCGCATAGCGGTCGGATTTCAGGAAAAATTGATGTAGTGCTGAG
CGGAATGGGATGGGAAGCGATGGGATGCAGTGCTGAGGGAACGGCGCCGG
CGGCTGTGTCGTTTCTGATCCAATGTTGTGGTCGCCCAGCCAAGGAGGGG
GAGGTGATGCTTCGGTTTGCTTTGGTTCCAGTGAACCTCCCTCTCTCTCC
GTATGAGCTGTTGCTGGCGTTTTGTTGTCGACTGGATTGCAGCGGGGTTG
CGCTGCAACCAACCTCCCCGCGCCCTTGAAATGCCTGCCAAGCTGTTGTT
TCGCTATGGTGCCTGTCTGGCTTCGCTTTCTTTCATCTTTTGGCCACTCC
CCTTTTCGCCTGCGCCGCATTTGGGCTGCGCTCAGACGCGCCCGGAGCTG
CTGGCGGCCTACCTGCGGACTTTTAAACCGAGCACCTTCAAAAAGGTGTT
CCGTCAATCGGCCGACGCCGACCTGCTCTCGTCCATCCTGGCCACACTGC
GAGACCTGACGGCGCCGGCGGACCCGGTGGAGGCGGTGCGGTTTCTGCGC
GGCCTGCAGAAGGCGGAGGGCTTCAAGATGATGGTCATGGTCATGGGGGA
CGGCGACCGCGCTGCCGTTCGCGCCATTTTAGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12030:1162..1895+

>mRNA_P-wetherbeei_contig12030.2.1 ID=mRNA_P-wetherbeei_contig12030.2.1|Name=mRNA_P-wetherbeei_contig12030.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig12030:1162..1895+ (Phaeothamnion wetherbeei SAG_119_79)
GATGTTCCGACCACGCCGCCCACGACGGCGTACGAGTTGGAGCGGGTCTG
GCGGAACATTAAGACGCGCCCGGAGCTGCTGGCGGCCTACCTGCGGACTT
TTAAACCGAGCACCTTCAAAAAGGTGTTCCGTCAATCGGCCGACGCCGAC
CTGCTCTCGTCCATCCTGGCCACACTGCGAGACCTGACGGCGCCGGCGGA
CCCGGTGGAGGCGGTGCGGTTTCTGCGCGGCCTGCAGAAGGCGGAGGGCT
TCAAGATGATGGTCATGGTCATGGGGGACGGCGACCGCGCTGCCGTTCGC
GCCATTTTAGAC
back to top