mRNA_P-wetherbeei_contig1203.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1203.5.1
Unique NamemRNA_P-wetherbeei_contig1203.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: A0A6H5JZ73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ73_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 3.010e-24
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            WT+WQLCDS LPTGGFAHS GLEAAAA+G V       L RFV+ ++A+ ASLQLPLL  A  A          +E W  VD +  A IT + ARRAS+AQG  LLR    +F
Sbjct:   37 WTVWQLCDSGLPTGGFAHSGGLEAAAAQGIVRAKHTGSLLRFVRGALANAASLQLPLLREARRART--------LEAWLEVDSVAHACITAEAARRASLAQGAGLLRAAQAMF 141
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: D7FXQ5_ECTSI (Urease accessory protein UreF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 7.750e-24
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            WT+WQLCDS LPTGGFAHS GLEAAAA+G V       L RFV+ ++A+ ASLQLPLL  A  A          +E W  VD +  A IT + ARRAS+AQG  LLR    +F
Sbjct:   23 WTLWQLCDSGLPTGGFAHSGGLEAAAAQGIVRAKHTGSLLRFVRGALANAASLQLPLLREARRART--------LEAWLEVDSVAHACITAEAARRASLAQGAGLLRAAQAMF 127
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: A0A836CDD6_9STRA (Urease accessory protein UreF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDD6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.350e-23
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRI 324
            W  WQLCDSALPTGGFAHSNGLEA+ A G VS  D   LA+F++  +A+  +LQ+P+L A         G +  ++ W   D L +A IT+ VARRAS AQG ALLR+
Sbjct:   30 WLTWQLCDSALPTGGFAHSNGLEASVAAGAVSAADPHFLAQFLKSCLANAVALQVPMLRAVWDTGAG--GSEGLLKAWLQADALANAVITSHVARRASAAQGCALLRL 135
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: B4FXL6_MAIZE (Urease accessory protein F n=3 Tax=Zea mays TaxID=4577 RepID=B4FXL6_MAIZE)

HSP 1 Score: 91.3 bits (225), Expect = 4.660e-20
Identity = 56/113 (49.56%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            WT WQ+ DS LPTGGFAHS GLEAA     V+  D + L  FV + + S  SL LP +   H A       D     WA +DRL DA++TN+VAR+AS AQG+ALLR+ + VF
Sbjct:   42 WTQWQILDSILPTGGFAHSYGLEAAMQSRVVN--DQEDLRSFVVQVLDSAGSLLLPFV---HCACAGKSPGD--AAAWAKLDRLLDATLTNEVARKASAAQGSALLRVAASVF 147
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: UPI000B8D122B (urease accessory protein F n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D122B)

HSP 1 Score: 88.2 bits (217), Expect = 4.420e-19
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            W+ WQL DS LPTGGFAHS GLEAA     VS    QGL  +V   + +  SL LP +   ++AA+S       +E W  +DR+ DA++TN+V+R+ASV+QG+AL+R+ + VF
Sbjct:   19 WSQWQLLDSILPTGGFAHSFGLEAAVHARVVSC--PQGLQTYVTHVLDNTGSLLLPFV---YSAALS-----PSLETWHKLDRMLDATLTNEVSRKASVSQGSALMRVAATVF 121
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: A0A6P5MNY8_ARADU (urease accessory protein F-like isoform X2 n=4 Tax=Arachis TaxID=3817 RepID=A0A6P5MNY8_ARADU)

HSP 1 Score: 86.3 bits (212), Expect = 8.480e-19
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            W+ WQL DS LPTGGFAHS GLEAA     VS  D   L  F+   + +  SL LP +   H A++S +     +E W  +D++ DA++TN+V+R+AS++QG+AL+R+ S VF
Sbjct:   20 WSQWQLLDSLLPTGGFAHSFGLEAAVQSNLVSNPDE--LKTFIIHVLENTGSLLLPFV---HLASVSPK-----LETWHNLDKILDATLTNEVSRKASISQGSALMRVGSAVF 122
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: I3SDX7_LOTJA (Uncharacterized protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SDX7_LOTJA)

HSP 1 Score: 87.4 bits (215), Expect = 8.880e-19
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            W+ WQL DS LPTGGFAHS GLEAA     VS  D   L  F+ R + +  SL LP + +A         I   ++ W  +DR+ DA++TN+V R+AS++QG+AL+R+ S VF
Sbjct:   20 WSQWQLLDSLLPTGGFAHSLGLEAAVQSHLVSDSDE--LKTFIIRLLENTGSLLLPFVYSAS--------ISPNLQTWHKLDRILDATLTNEVGRKASISQGSALMRVASAVF 122
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: A0A1Q3BGM6_CEPFO (UreF domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BGM6_CEPFO)

HSP 1 Score: 87.0 bits (214), Expect = 1.290e-18
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            W+ WQL DS LPTGGFAHS GLEAA  +  + +G  + L  FV   + +  SL LP + +A         +   +E W A+DR+ DA++TN+V+R+ASVAQG+AL+R+ + VF
Sbjct:   23 WSQWQLLDSILPTGGFAHSFGLEAAI-QARIISGP-EDLQTFVTHVLENTGSLLLPFVYSAT--------VCPNIETWHALDRMLDATLTNEVSRKASVAQGSALMRVAAAVF 125
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: A0A6A4LVL7_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LVL7_9ERIC)

HSP 1 Score: 87.0 bits (214), Expect = 2.030e-18
Identity = 51/113 (45.13%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            W+ WQL DS LPTGGFAHS GLEAA     VS  +V+ L  FV   + +  SL LP + +A         I   ++ W  +DR+ DA++TN+V R+AS+AQG+AL+R+ + VF
Sbjct:   23 WSQWQLLDSILPTGGFAHSFGLEAAVQACLVS--NVEDLRIFVIHVLENTGSLLLPFIYSAT--------ISPNIQTWHKLDRMLDATLTNEVGRKASIAQGSALMRLAASVF 125
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BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Match: UPI0007AFCA0F (urease accessory protein F n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI0007AFCA0F)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-18
Identity = 51/113 (45.13%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 WTMWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIASLQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQGNALLRIFSDVF 339
            W+ WQL DS LPTGGFAHS GLEAA     VS  D   L  F+   + +  SL LP +   H+A++S       +E W  +D++ DA++TN+V+R+AS++QG+AL+R+ S VF
Sbjct:   20 WSQWQLLDSLLPTGGFAHSFGLEAAVQSNLVSNPDE--LKTFIIHVLENTGSLLLPFV---HSASVSPN-----LETWHNLDKILDATLTNEVSRKASISQGSALMRVGSAVF 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1203.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ73_9PHAE3.010e-2453.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXQ5_ECTSI7.750e-2453.10Urease accessory protein UreF n=1 Tax=Ectocarpus s... [more]
A0A836CDD6_9STRA1.350e-2351.85Urease accessory protein UreF n=1 Tax=Tribonema mi... [more]
B4FXL6_MAIZE4.660e-2049.56Urease accessory protein F n=3 Tax=Zea mays TaxID=... [more]
UPI000B8D122B4.420e-1946.90urease accessory protein F n=1 Tax=Carica papaya T... [more]
A0A6P5MNY8_ARADU8.480e-1945.13urease accessory protein F-like isoform X2 n=4 Tax... [more]
I3SDX7_LOTJA8.880e-1945.13Uncharacterized protein n=1 Tax=Lotus japonicus Ta... [more]
A0A1Q3BGM6_CEPFO1.290e-1845.13UreF domain-containing protein n=1 Tax=Cephalotus ... [more]
A0A6A4LVL7_9ERIC2.030e-1845.13Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]
UPI0007AFCA0F2.460e-1845.13urease accessory protein F n=1 Tax=Arachis ipaensi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1203contigP-wetherbeei_contig1203:6712..7381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXQ5
Preferred nameUREF
PFAMsUreF
Model size339
Max annot lvl2759|Eukaryota
KEGG koko:K03188,ko:K16453
Hectar predicted targeting categoryother localisation
GOsGO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019627,GO:0034641,GO:0043085,GO:0043603,GO:0044093,GO:0044237,GO:0044281,GO:0050790,GO:0051336,GO:0051345,GO:0065007,GO:0065009,GO:0071704,GO:0071941,GO:1901564,GO:1905181,GO:1905182
Exons3
Evalue3.45e-22
EggNOG OGsCOG0830@1|root,2REVQ@2759|Eukaryota
Ec32 ortholog descriptionUrease accessory protein UreF
Ec32 orthologEc-28_001730.1
Descriptionnickel cation binding
Cds size333
COG categoryO
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.6559446-UTR-P-wetherbeei_contig1203:6711..67171683185935.6559446-UTR-P-wetherbeei_contig1203:6711..6717Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1203 6712..6717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.664612-CDS-P-wetherbeei_contig1203:6717..68331683185935.664612-CDS-P-wetherbeei_contig1203:6717..6833Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 6718..6833 +
1683185935.6719546-CDS-P-wetherbeei_contig1203:6929..70831683185935.6719546-CDS-P-wetherbeei_contig1203:6929..7083Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 6930..7083 +
1683185935.679223-CDS-P-wetherbeei_contig1203:7318..73811683185935.679223-CDS-P-wetherbeei_contig1203:7318..7381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1203 7319..7381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1203.5.1prot_P-wetherbeei_contig1203.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1203 6718..7381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1203.5.1

>prot_P-wetherbeei_contig1203.5.1 ID=prot_P-wetherbeei_contig1203.5.1|Name=mRNA_P-wetherbeei_contig1203.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MWQLCDSALPTGGFAHSNGLEAAAAEGEVSTGDVQGLARFVQRSVASIAS
LQLPLLLAAHAAAMSNRGIDDCVEVWAAVDRLTDASITNQVARRASVAQG
NALLRIFSDVF
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mRNA from alignment at P-wetherbeei_contig1203:6712..7381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1203.5.1 ID=mRNA_P-wetherbeei_contig1203.5.1|Name=mRNA_P-wetherbeei_contig1203.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=670bp|location=Sequence derived from alignment at P-wetherbeei_contig1203:6712..7381+ (Phaeothamnion wetherbeei SAG_119_79)
TGGACGATGTGGCAGCTGTGCGACTCTGCTCTGCCCACAGGAGGCTTCGC
GCACTCAAATGGCCTCGAGGCTGCGGCGGCGGAGGGCGAGGTTTCGACAG
GCGACGTCCAAGGCCTCGCGAGGTGAGAACCCGGAGATTTATTTCCCTCC
TTTCTTTCATTGCGTAATTCTTTCGTTTAGCTGAAACTAGTGATCATTTG
CCTCTTTTCTTTTTCCAGATTTGTGCAGCGTTCGGTCGCAAGCATTGCAT
CGTTGCAACTGCCACTTCTCCTGGCGGCGCACGCAGCGGCGATGAGCAAT
CGGGGCATCGATGATTGCGTTGAAGTTTGGGCTGCTGTGGATCGGCTCAC
CGACGCGAGTATTACGAATCAGGTGAGGGGTGTGCATCCCTGACTATTCC
TTTGACATTGCACGCGTTGGGGAAACCCTCGCTGCGTTTCAAGTGCCGAG
ATTGTCTCCAGGGGGCTCTCTTAATGGTTCGGATGCCGTGGCATGTACAA
GAACGTTTTGCGTCTGCGGCCTCCAGCCAGTGGACTTCCTGTTTCTCGTT
TCGATCCCGCTGACTGGCTATCTGCAACCCCACCCCACCTTTTCAATTCT
GTGAAAGGTGGCTCGGCGCGCGTCCGTAGCTCAAGGCAACGCCTTGCTGC
GGATATTCTCCGACGTCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1203:6712..7381+

>mRNA_P-wetherbeei_contig1203.5.1 ID=mRNA_P-wetherbeei_contig1203.5.1|Name=mRNA_P-wetherbeei_contig1203.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig1203:6712..7381+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGCAGCTGTGCGACTCTGCTCTGCCCACAGGAGGCTTCGCGCACTC
AAATGGCCTCGAGGCTGCGGCGGCGGAGGGCGAGGTTTCGACAGGCGACG
TCCAAGGCCTCGCGAGATTTGTGCAGCGTTCGGTCGCAAGCATTGCATCG
TTGCAACTGCCACTTCTCCTGGCGGCGCACGCAGCGGCGATGAGCAATCG
GGGCATCGATGATTGCGTTGAAGTTTGGGCTGCTGTGGATCGGCTCACCG
ACGCGAGTATTACGAATCAGGTGGCTCGGCGCGCGTCCGTAGCTCAAGGC
AACGCCTTGCTGCGGATATTCTCCGACGTCTTT
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