mRNA_P-wetherbeei_contig12027.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12027.1.1
Unique NamemRNA_P-wetherbeei_contig12027.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A520G3A6_9BURK (Uncharacterized protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520G3A6_9BURK)

HSP 1 Score: 59.7 bits (143), Expect = 1.630e-10
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   22 LLVASALLSGCVIEPAYRGS-YHGS-SYGQRD---------RDHDGVPNRYDRAPNNPYRY 171
            LLVASA L+GCV  P   G  YHG   YG RD         RD DGVPNRYDR P+NPYRY
Sbjct:   10 LLVASATLAGCVAVPYDSGRRYHGGYGYGDRDGRAYRSDRDRDSDGVPNRYDRRPDNPYRY 70          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: UPI00188BE930 (hypothetical protein n=2 Tax=Noviherbaspirillum TaxID=1344552 RepID=UPI00188BE930)

HSP 1 Score: 58.9 bits (141), Expect = 3.210e-10
Identity = 35/69 (50.72%), Postives = 39/69 (56.52%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPA-------YRGSYHG-----SSYGQRDRDHDGVPNRYDRAPNNPYRY 171
            M+  I  L  AS LLSGCV+ P        YR  +HG          RDRD DG+PNRYDRAP NPYRY
Sbjct:    1 MRKLILPLAAASILLSGCVVAPYDPVGPGYYRQPHHGYXXXXXXXXXRDRDGDGIPNRYDRAPGNPYRY 69          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A3A3FM50_9BURK (Uncharacterized protein n=1 Tax=Noviherbaspirillum saxi TaxID=2320863 RepID=A0A3A3FM50_9BURK)

HSP 1 Score: 58.2 bits (139), Expect = 6.010e-10
Identity = 33/67 (49.25%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPAYRGSYH----------GSSYGQRDRDHDGVPNRYDRAPNNPYRY 171
            MK  +  +  A  LLSGC+  P      H          G SY +RDRD DGVPNRYDR PNNPYRY
Sbjct:    1 MKKLVLSIAAACGLLSGCIAVPVSDAGVHVSGTVRSGSAGHSY-RRDRDGDGVPNRYDRRPNNPYRY 66          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A0Q7CUI9_9BURK (Uncharacterized protein n=3 Tax=Variovorax TaxID=34072 RepID=A0A0Q7CUI9_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 9.400e-10
Identity = 33/69 (47.83%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPAYRGSYHGSSYGQRDRDHDGVPNRYDRA-------------PNNPYR 168
            M   +A LL ASA+L+GCV+ P       G  YG RDRD DGVPNRYD               PNNPYR
Sbjct:    1 MTKILAILLAASAILAGCVVAPYDNPPPRGQHYGNRDRDRDGVPNRYDXXXXXXXXXXXXXXXPNNPYR 69          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A4Q3IX64_9BURK (Uncharacterized protein n=1 Tax=Oxalobacteraceae bacterium TaxID=1871070 RepID=A0A4Q3IX64_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 1.760e-9
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPAYRGSYHGSSYGQ----------RDRDHDGVPNRYDRAPNNPYRY 171
            MK  +  L  A+ LLSGC+  P   G+ +  SY +          RDRD DGVPNRYDRAP NPYRY
Sbjct:    1 MKKLLIPLASAALLLSGCIAVPYNAGAGYHRSYDREPYSAPSRHYRDRDRDGVPNRYDRAPANPYRY 67          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A0Q8R764_9BURK (Uncharacterized protein n=1 Tax=Noviherbaspirillum sp. Root189 TaxID=1736487 RepID=A0A0Q8R764_9BURK)

HSP 1 Score: 56.6 bits (135), Expect = 2.560e-9
Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPAYRGSYHGSSYGQ----------RDRDHDGVPNRYDRAPNNPYRY 171
            MK  + CL  AS+LL+GC+  P   G  + +   +          RDRD DGV NRYDR PNNPYRY
Sbjct:    2 MKKLMLCLAAASSLLTGCIAVPVSDGGVYVTGTARATDGHPRRYSRDRDGDGVQNRYDRRPNNPYRY 68          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A2E9BTI6_9BURK (Uncharacterized protein n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A2E9BTI6_9BURK)

HSP 1 Score: 53.9 bits (128), Expect = 6.840e-8
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 1
Query:   82 YHGSSYGQRDRDHDGVPNRYDRAPNNPYRY 171
            Y G  YG+RD D DGVPNRYDR PNNPYRY
Sbjct:   75 YDGRRYGRRDNDGDGVPNRYDRRPNNPYRY 104          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A4Z0CBK8_9BURK (Uncharacterized protein n=1 Tax=Ramlibacter humi TaxID=2530451 RepID=A0A4Z0CBK8_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 7.950e-8
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   43 LSGCVIEP----AYRGSYHGSSYGQ--RDRDHDGVPNRYDRAPNNPYRY 171
            L+GCVI P    A RG Y+ S   +  RD D DGVPNRYDR PN+PYRY
Sbjct:   17 LTGCVIAPVEPVAVRGGYYHSPPPRAWRDNDGDGVPNRYDRRPNDPYRY 65          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: A0A6P2EJF5_9BURK (Uncharacterized protein n=6 Tax=unclassified Variovorax TaxID=663243 RepID=A0A6P2EJF5_9BURK)

HSP 1 Score: 52.8 bits (125), Expect = 9.150e-8
Identity = 34/71 (47.89%), Postives = 39/71 (54.93%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPAYRG-SYHGSSYGQRDRDHDGVPNRYDRA-------------PNNPYRY 171
            MKT +A L+ A+A L+GCV  P   G S   +SYG RDRD DGVPNRY                PNNP RY
Sbjct:    1 MKTLVALLIAATAALAGCVAVPYDSGRSPPRASYGDRDRDRDGVPNRYXXXXXXXXXXXXXXSRPNNPNRY 71          
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Match: UPI001B0E967C (Uncharacterized protein n=1 Tax=Variovorax sp. TaxID=1871043 RepID=UPI001B0E967C)

HSP 1 Score: 51.2 bits (121), Expect = 3.230e-7
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:    1 MKTAIACLLVASALLSGCVIEPAYRGSYHGSSYGQ---------RDRDHDGVPNRYDRAPNNPYRY 171
            MK ++A LL A+AL +GCV  P   G    + Y +         RD D DGVPNRYDR P+NPYRY
Sbjct:    1 MKASLAFLLAAAAL-TGCVAVPYDAGPPPRAHYDRPXXXXXRAMRDDDRDGVPNRYDRRPDNPYRY 65          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12027.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A520G3A6_9BURK1.630e-1059.02Uncharacterized protein n=1 Tax=Variovorax sp. Tax... [more]
UPI00188BE9303.210e-1050.72hypothetical protein n=2 Tax=Noviherbaspirillum Ta... [more]
A0A3A3FM50_9BURK6.010e-1049.25Uncharacterized protein n=1 Tax=Noviherbaspirillum... [more]
A0A0Q7CUI9_9BURK9.400e-1047.83Uncharacterized protein n=3 Tax=Variovorax TaxID=3... [more]
A0A4Q3IX64_9BURK1.760e-949.25Uncharacterized protein n=1 Tax=Oxalobacteraceae b... [more]
A0A0Q8R764_9BURK2.560e-946.27Uncharacterized protein n=1 Tax=Noviherbaspirillum... [more]
A0A2E9BTI6_9BURK6.840e-876.67Uncharacterized protein n=3 Tax=unclassified Vario... [more]
A0A4Z0CBK8_9BURK7.950e-859.18Uncharacterized protein n=1 Tax=Ramlibacter humi T... [more]
A0A6P2EJF5_9BURK9.150e-847.89Uncharacterized protein n=6 Tax=unclassified Vario... [more]
UPI001B0E967C3.230e-748.48Uncharacterized protein n=1 Tax=Variovorax sp. Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12027contigP-wetherbeei_contig12027:413..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog543728.Vapar_1344
Model size174
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.08e-08
EggNOG OGs2EIPZ@1|root,33CFF@2|Bacteria,1NJHP@1224|Proteobacteria,2VY0Z@28216|Betaproteobacteria,4AFWK@80864|Comamonadaceae
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.4298074-CDS-P-wetherbeei_contig12027:412..5861683185935.4298074-CDS-P-wetherbeei_contig12027:412..586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12027 413..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12027.1.1prot_P-wetherbeei_contig12027.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12027 413..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12027.1.1

>prot_P-wetherbeei_contig12027.1.1 ID=prot_P-wetherbeei_contig12027.1.1|Name=mRNA_P-wetherbeei_contig12027.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MKTAIACLLVASALLSGCVIEPAYRGSYHGSSYGQRDRDHDGVPNRYDRA
PNNPYRY*
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mRNA from alignment at P-wetherbeei_contig12027:413..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12027.1.1 ID=mRNA_P-wetherbeei_contig12027.1.1|Name=mRNA_P-wetherbeei_contig12027.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig12027:413..586- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAACCGCAATTGCGTGCCTGCTGGTGGCAAGCGCCCTGTTGTCCGG CTGCGTCATAGAGCCTGCGTATCGCGGCAGCTACCACGGTAGCAGCTATG GTCAACGCGACCGCGATCATGACGGCGTGCCGAACCGCTACGACCGCGCG CCGAACAATCCGTATCGCTATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12027:413..586-

>mRNA_P-wetherbeei_contig12027.1.1 ID=mRNA_P-wetherbeei_contig12027.1.1|Name=mRNA_P-wetherbeei_contig12027.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig12027:413..586- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAACCGCAATTGCGTGCCTGCTGGTGGCAAGCGCCCTGTTGTCCGG
CTGCGTCATAGAGCCTGCGTATCGCGGCAGCTACCACGGTAGCAGCTATG
GTCAACGCGACCGCGATCATGACGGCGTGCCGAACCGCTACGACCGCGCG
CCGAACAATCCGTATCGCTATTAG
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