mRNA_P-wetherbeei_contig1202.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1202.2.1
Unique NamemRNA_P-wetherbeei_contig1202.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7R9UD93_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UD93_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.670e-18
Identity = 105/379 (27.70%), Postives = 159/379 (41.95%), Query Frame = 1 
Query:  331 LPPLAHVDAV---CLKGDMRALD-DGRHIVRGQWAANRRALQAPDGLKNDFDATSYGSPGEPIPRCGEYRGGFNITQ---NKTTNYMEDVMNLTFQPNRAGGFNVSGTANNAYGAYTISGTMTPAGRMEIFKLMPGAAGADAVVSTGGAGGGRRRSAPSGGGSGXXXXXXXXXXXXXXXXXXXXXXXSSKGPAVDMPXXXXXXXXXXXXXXXXXXXAATRAGPFSGS--------DLAAAG--------------GDTDPKALTRE--QTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKMESTISAKR 1374
            LPP   V A    C+KG +      G H+  G W  NR +   P  +       +     + +P  G Y G F + Q          E  + + F  N AGG+NVSG   N +G +TI+G +   GR+E++++     G+    S       +R+++     S                          K  A   P       XXXXXXXXXXXX  +R     GS          + AG               D++ +  T E  + ++ +S+L + ++     +F   VDPV   +PDYFD++  PMDLG + QKL   +Y   D+F  D RL F NA+ YNT+    V  +A     + E + R++   + AKR
Sbjct:  197 LPPPTPVPAFALPCMKGVLEPDPVSGVHVWAGMWGMNRESHNIPGHISAFEYRHNPAERPKAVPSSGSYSGFFMLKQPPPKAPLKIDEKGIEIAFVSNNAGGYNVSGQGTNRFGKFTITGVLQADGRLEMYRMYTPVKGSPGPKSPKAD---KRKASSPRTSSVPLKEEKNDGAQASRVQRANRGSWKDKALAAARPAAEAKAKXXXXXXXXXXXXXPSRVDAGEGSGRQSEEQLQASRAGRPRKLPAYLKELPDADSEKRRSTEELKRAQTILSYLMKDNQSF---WFANPVDPVALKIPDYFDIVKQPMDLGTIRQKLTTKEYEGLDDFAEDVRLTFSNAIMYNTSADHPVRKAAKALSLSFEQRYRQLRGELDAKR 569
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A6U4KPS7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KPS7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.050e-16
Identity = 101/390 (25.90%), Postives = 154/390 (39.49%), Query Frame = 1 
Query:  304 AMSREDELPLPPLAHVDAV--CLKGDMRALD-DGRHIVRGQWAANRRALQAPDGLKN-DFDATSYGSPGEPIPRCGEYRGGFNITQNKTTNYME----DVMNLTFQPNRAGGFNVSGTANNAYGAYTISGTMTPAGRMEIFKLMPGAAGADAVVSTGGAGGGRRRSA----------PSGGGSGXXXXXXXXXXXXXXXXXXXXXXXSSKGPAVDMPXXXXXXXXXXXXXXXXXXXA----------ATRAG-----PFSGSDLAAAGGDTDPKALTREQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKMESTISAKR 1374
            A + +DE P PP A       C+KG M +    G H+  G W   + A   P      ++  T    P + +P  G Y G F + Q      ++    DV+ L F  N AGG NV+G   N +G +T+SG +   G +EI+++     GA A  +   A   R++ +          P+ GG G                       S+  PA   P                   A          A R G     P    +L     + + +    E+ +     +    +  ++ +F  AVDP+   +PDYFD+I  PMDLG V +KL   +Y +  +F  D RL FQNA+ YN   +  V ++A       E K+R     +  KR
Sbjct:  142 ASAGDDEGPPPPTAPPAFALPCMKGAMMSDPVSGVHVCAGMWGMTKEAHGIPGHTSAFEYRHTPANQP-QAVPSAGPYTGFFMLKQPAPKPPLKVDEKDVV-LRFVKNSAGGHNVAGEGANRFGKFTVSGVLAADGNLEIYRMYVVNKGAGAAQAKTPAA--RKKKSLSVKAPETAPPATGGEGPAGGATPRSQRQNRGSWKDIAKASAPEPA--KPKAKAARKGAVAKAKGGAKKALKQEAEPVLHANRTGRLRKTPSHLMELP----EQEKRPRNSEEMKKAGVLMTALMKDANSFWFAIAVDPIALKIPDYFDIIKKPMDLGTVKKKLTAHEYESIHDFADDVRLTFQNAMTYNVAAENPVRIAAKSMSTTFEQKLRAALHELDTKR 521
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7S3UXM5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM5_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 3.420e-15
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1 
Query: 1033 TREQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKMESTISA 1368
            T+ Q + F++F+   +RK ++ +F E VDP    +PDYFDVIS PMD G V  KL+ G YR  +   TD RL  +NAL YN    + V+++A E  K  E + RK+   I A
Sbjct:   41 TQRQAQEFMTFM--MTRK-NSFWFNEPVDPEVLNIPDYFDVISKPMDFGTVSSKLKAGMYRGLEAMATDMRLTLKNALAYNHQKDSPVNIAAREISKMFEERYRKLREKIVA 149
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7R9ZCH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCH8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 5.140e-14
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 1 
Query: 1012 DTDPKA-LTR--EQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKME 1353
            D DP A L R  E+    + FL+ +  +   +FF E VDPV HG+P Y  +I+ PMDLG + Q++  G+ ++ + F   ARLVF+NA+ +N +   +VH +A     A   K R +E
Sbjct:   27 DDDPAARLARVMEKCAQILKFLRDKDAQA-GSFFAEPVDPVAHGIPTYHQIITDPMDLGTIQQRMDAGEIKSPEAFSRLARLVFENAMTFNVDSNHVVHQTARALLIAFNQKFRDVE 142
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7S2XZ98_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ98_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.040e-13
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 1 
Query: 1009 GDTDPKALTREQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKMESTISAK 1371
            GD D       +    + FL        A +F E VDP   G+PDYF+VI  PMD G + ++L  G Y   ++F +D RLVF+NA+ YN +  + V+++A +  K  E K + +++  SA+
Sbjct:   19 GDVDTTPDFTPKIREMLKFLMNSKS---AFWFNEPVDPRALGIPDYFNVIKKPMDFGTIMRRLEAGHYTCLEDFASDVRLVFKNAVTYNNHKDSPVNIAAKDLSKVFEEKFKAIQNMFSAE 136
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: K0SP97_THAOC (Histone acetyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SP97_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 6.130e-13
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 
Query: 1075 QSRKMHAN--FFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKM 1350
            +S + H N   F   V+PV  G+ DYFD+I  PMDLG +G+KL +G Y + DEF +D RL F+NA++YN  ++T+VH  A  F+K  +   +KM
Sbjct:  866 KSLQNHENGWVFSTPVNPVELGLDDYFDIIKKPMDLGTIGKKLEQGSYHSFDEFKSDVRLTFENAMKYN-EEQTVVHEMAKGFKKKFDEDYKKM 958
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7S2XB31_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XB31_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-12
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1 
Query: 1009 GDTDPKALTREQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKM 1350
            G   P     +Q+++ +  L    +  HA  F E VDPV+ G+P YF++I HPMDLG V ++L RG Y    +F  D RLVF NA ++N   +T VH  A   ++  E K  K+
Sbjct:   45 GGKSPAERALQQSKTVLKNLM---KHRHAWVFNEPVDPVKLGIPQYFEIIKHPMDLGTVKKRLDRGYYTDVSQFAEDVRLVFNNAQRFN-KPQTDVHKMAGIVREVFEQKYAKI 154
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A1J5X9Q3_9MICR (Swr1 complex bromodomain subunit Brf1 n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5X9Q3_9MICR)

HSP 1 Score: 81.3 bits (199), Expect = 1.680e-12
Identity = 51/131 (38.93%), Postives = 64/131 (48.85%), Query Frame = 1 
Query:  973 GPFSGSDLAAAGGDTDPKALTREQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKMESTIS 1365
            GP      A A    + K L +EQ +     L+   R   A  F   VDPV  G+PDYFDVI  PMDLG V +K   G Y+T DEF  D   VF N   YN N +T+V+ S    +K     + KM   +S
Sbjct:   24 GPAEEEKDAVAEESEEKKQLLQEQLKFCGVVLKGMRRHKDAAAFLHPVDPVALGIPDYFDVIKTPMDLGTVQEKHSSGVYKTPDEFIGDVSTVFTNCSLYN-NPETMVYKSGQVLEKYFSSMLEKMPQDLS 153
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7S1Z9R7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z9R7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.360e-12
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 1 
Query: 1012 DTDPKA-LTR--EQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKME 1353
            D DP+A L R  E+    + FL+ +      +FF E VDPV HG+P Y  +I++PMDLG + +KL   + ++ +EF    RLVF+NA+++N +   +VH SA         K R +E
Sbjct:  230 DDDPEAQLARIMEKCTQILKFLRDKDLAT-GSFFSEPVDPVAHGIPTYHQIITNPMDLGTISEKLSADEVKSPEEFSRLVRLVFENAMKFNIDSTHVVHQSARSMLIIFNQKFRDVE 345
[Close]
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Match: A0A7S3VBM8_9STRA (Histone acetyltransferase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBM8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.410e-12
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1 
Query: 1030 LTREQTESFVSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRGDYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKM 1350
            + +EQ  + V  L    R  H   F   VDPV  G+PDYF ++  PMDLG + +KL  G Y + ++F TD RL F+NA+ YN +DK++V+  A + ++  E +  KM
Sbjct:    2 IPKEQCLAIVKLLM---RHEHGWVFSSPVDPVALGLPDYFQIVKKPMDLGTINKKLENGIYHSIEDFDTDVRLTFKNAMSYN-DDKSVVYGMAKDLKEVYESEHTKM 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1202.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UD93_9STRA1.670e-1827.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4KPS7_9STRA1.050e-1625.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3UXM5_HETAK3.420e-1541.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9ZCH8_9STRA5.140e-1437.61Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2XZ98_9STRA6.040e-1334.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0SP97_THAOC6.130e-1344.68Histone acetyltransferase n=1 Tax=Thalassiosira oc... [more]
A0A7S2XB31_9EUKA1.530e-1238.60Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A1J5X9Q3_9MICR1.680e-1238.93Swr1 complex bromodomain subunit Brf1 n=1 Tax=Amph... [more]
A0A7S1Z9R7_9STRA2.360e-1237.61Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S3VBM8_9STRA2.410e-1239.25Histone acetyltransferase n=1 Tax=Chaetoceros debi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1202contigP-wetherbeei_contig1202:1470..4820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LRH3
PFAMsBET,Bromodomain
Model size2200
Max annot lvl2759|Eukaryota
KEGG koko:K11684
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.09e-17
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota
Descriptionacetylation-dependent protein binding
Cds size1893
COG categoryBK
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.2778432-UTR-P-wetherbeei_contig1202:1469..17751683185935.2778432-UTR-P-wetherbeei_contig1202:1469..1775Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1202 1470..1775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.2867548-CDS-P-wetherbeei_contig1202:1775..18801683185935.2867548-CDS-P-wetherbeei_contig1202:1775..1880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1202 1776..1880 +
1683185935.2945962-CDS-P-wetherbeei_contig1202:2111..30201683185935.2945962-CDS-P-wetherbeei_contig1202:2111..3020Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1202 2112..3020 +
1683185935.302917-CDS-P-wetherbeei_contig1202:3357..35941683185935.302917-CDS-P-wetherbeei_contig1202:3357..3594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1202 3358..3594 +
1683185935.3115454-CDS-P-wetherbeei_contig1202:4178..48201683185935.3115454-CDS-P-wetherbeei_contig1202:4178..4820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1202 4179..4820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1202.2.1prot_P-wetherbeei_contig1202.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1202 1776..4820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1202.2.1

>prot_P-wetherbeei_contig1202.2.1 ID=prot_P-wetherbeei_contig1202.2.1|Name=mRNA_P-wetherbeei_contig1202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=631bp
MSREDELPLPPLAHVDAVCLKGDMRALDDGRHIVRGQWAANRRALQAPDG
LKNDFDATSYGSPGEPIPRCGEYRGGFNITQNKTTNYMEDVMNLTFQPNR
AGGFNVSGTANNAYGAYTISGTMTPAGRMEIFKLMPGAAGADAVVSTGGA
GGGRRRSAPSGGGSGGFGGVGGSGKRGSKGSRPGAVGASSKGPAVDMPPP
PPPAFGAGGVGTAAPAAAATRAGPFSGSDLAAAGGDTDPKALTREQTESF
VSFLQQQSRKMHANFFFEAVDPVRHGVPDYFDVISHPMDLGLVGQKLRRG
DYRTRDEFYTDARLVFQNALQYNTNDKTIVHVSALEFQKALEGKIRKMES
TISAKRPKFHSVQAAPRPAALPTQAAQRIARAGATAAAATADDAAASTSL
TREELLELKSSVEAVFKDQRTDMDRAYAYVAMQYISKSVPDAEKRREGNE
YVILAEAMPPKVARQLLTICGKFLQSRAEAAAAAAAEAAAEAAAEASSAG
TPTRAAVDDGGGVSAAARTESSSADDGVVRSKRKREEGGSDGSGSGTGSD
SDDDDGEGGSAKAACELAAAAAARAQKRQKAAEEADGDGDSMSDDGGHNR
EGENGDGGGDDDEEEAEFEGPSSAAAAGKGM
back to top

mRNA from alignment at P-wetherbeei_contig1202:1470..4820+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1202.2.1 ID=mRNA_P-wetherbeei_contig1202.2.1|Name=mRNA_P-wetherbeei_contig1202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3351bp|location=Sequence derived from alignment at P-wetherbeei_contig1202:1470..4820+ (Phaeothamnion wetherbeei SAG_119_79)
GAAGTGAATATCGAGTGGAGATAATAATCGAGGTCCGTCAAGCTCGCCAT
TCGTTGTTATATTTTTTCTGAGTTGATTGTATAGAAAAACTCAGCAGAAA
ATAGCCCTTTCCCTTCCCTTTCCTGCGTCTTGAGCTGGATTTACAATGGA
TTGCACCATTACCGCGCCCTTGACGCCCGCGTCGTCAGGTTGCAGGTACA
AGATCATACTTGGAGGAGAGAATCTGGCGACCGGAGCGCTTATAGCCCCG
CAATTCTCCCAGACACAGGAAAGCCTCACGGACGGCGAGAACTGCGTTTC
GGCGCCATGAGCCGCGAAGACGAGCTTCCGCTACCGCCGCTGGCCCACGT
CGATGCCGTCTGCCTGAAAGGCGATATGCGGGCGCTCGATGACGGGAGGC
ACATCGTGAGGGTAAGTTGGGATCTTTTCTTCATTTCACACACCTCCTCG
GCGTTGTTCTTGCGCGCCTGTAAGTGCCGCGTGGCCTAGGCTTTCACACT
TCAAAACATCCGGGATCCCAGATGGCGAAGCGTAACTTCCCCCCTGACTC
GCCGTCGGCTTTTTTTGGTGGGACAAAGGGTTCTTAGCACGCTCTGCCTT
TTTATCGACACGGACGCATTGTGCTGCGGGGTTCGCCTGCAGGGTCAATG
GGCAGCAAATAGGAGGGCTCTGCAGGCCCCCGACGGCCTGAAGAACGACT
TCGATGCCACGAGCTACGGCTCTCCCGGGGAACCTATCCCCCGCTGCGGC
GAGTACCGCGGCGGCTTCAACATAACGCAGAACAAGACGACCAACTACAT
GGAGGACGTCATGAACTTGACCTTCCAGCCCAACCGGGCAGGCGGGTTCA
ACGTGTCGGGCACCGCCAACAATGCGTACGGCGCCTACACCATCAGCGGC
ACAATGACACCCGCCGGGCGGATGGAGATCTTCAAGCTCATGCCCGGAGC
GGCCGGCGCCGACGCCGTGGTCAGCACGGGCGGCGCCGGCGGCGGACGGA
GGCGGAGTGCGCCCAGCGGCGGCGGCAGCGGAGGCTTTGGCGGCGTGGGA
GGGTCTGGCAAGCGCGGCTCCAAGGGCAGCCGTCCCGGAGCAGTCGGTGC
CTCCTCGAAGGGGCCGGCTGTTGACATGCCGCCACCACCGCCGCCGGCAT
TCGGAGCTGGAGGCGTGGGGACCGCCGCACCGGCTGCGGCCGCCACACGC
GCAGGGCCGTTCAGCGGCAGCGACCTTGCTGCCGCAGGCGGCGACACCGA
CCCGAAGGCGCTGACGCGGGAGCAGACCGAAAGCTTCGTGAGCTTCCTTC
AGCAGCAGTCGAGAAAGATGCATGCGAACTTCTTCTTCGAGGCGGTGGAC
CCGGTCCGCCACGGCGTCCCGGACTACTTCGATGTCATCAGCCACCCGAT
GGACCTCGGGCTGGTGGGCCAGAAGCTCCGGCGGGGCGACTACCGGACAC
GGGACGAGTTCTACACAGACGCCCGCCTCGTCTTCCAGAACGCGCTGCAG
TACAACACTAACGACAAGACTATCGTCCACGTCAGCGCTCTGGAATTCCA
GGTGGGGGACGTCTCGCGAACGGGCTATTTGTTTGTAATCTGGCGCTGGG
TAAACATCTTGTTTGTGTATACCAATCGGCTGTTACCTGGCTGCCGCCTG
CAGTTTTTGCGCCGTTTTGAGGGCTTGAGGCAGCTGTGAAGCGAGCCAGT
TTGTTCCGGGCCAGAAGGAATCGATCCGTCTTGCATTCTACGCTTGCTGG
AAAGGACGAGTTAGGCTCGGTGTTTAGGCACGCCTAACCGTTTTCACAAA
ACCACACCGAACTGCCTGTCGGCCGCTAAAAGAGAGTCTTGCTCTTCTCC
CCTCCGTCGCGATCCTCGGGCGGATCTCGGCTCTGCAGAAAGCTCTGGAG
GGAAAGATCCGGAAGATGGAATCGACCATCAGCGCGAAGCGGCCGAAATT
TCACTCGGTGCAAGCCGCCCCACGCCCTGCGGCCTTGCCGACGCAAGCAG
CGCAGAGGATAGCGAGAGCTGGAGCAACGGCGGCGGCAGCGACGGCGGAT
GATGCTGCAGCGTCAACATCGCTGACCCGGGAGGAGCTGCTGGAGCTGAA
AAGCAGCGTCGAAGCGGTTTTCAAGGTCAGTGGGACGAGAGTGCTGCATG
CTACGTGTGCACTTTTGCATGTACGAGACTGTAGAGAGGAACTGGGAAGT
ACCCCCCCAGGGCTTGTGTTCTGCCATTACGGCGATCACTGTCTCGCTTC
TCCTCGAGTTTTACGCCCCCTTCCGGTTCGCTCGTTGTTGATCTTCCGGC
TATACCATGTTTGGCTTATTTTTTCCAGTTAAGGAGGAGTGTGAATGAAG
GCTTTTTGTATAAGTCATTGCGTGGACGGGAGTTCGTAAACGGTTGCTTT
TCAAAACATCAGCGCAAAGGGGTGGATGAGGCTCTGCCGGTCGGCTGGCC
CTTTTTGTTGAAGCAAGTGAGAGGTTTTCCCAGCAAACACCATCCTCCTT
TTATTGTAGGTGTGGGTCTCGCAGCAACCTGCGCCTTCTCCTTTTGCTGT
GTGCTTTGCCTGCCTTCCGCCTTTGCCTGCCTTAGAATCGCGTCTTTTAG
TCTTTTCGCTTTCCAAGTGCTCCACGCTGACGTATCGTTCCGTTTCCGGC
TCCATTCGCTCCCAACTGAGTTCCTCTTTCCGGCTCTGCTCGGCTGCCGA
CTGCTGCAGGACCAGCGAACGGACATGGACCGGGCCTACGCCTACGTGGC
GATGCAGTACATCTCCAAGTCGGTGCCCGACGCGGAGAAGCGGCGGGAGG
GGAACGAGTACGTCATCTTGGCGGAAGCCATGCCGCCCAAGGTCGCCCGT
CAGCTGCTCACCATCTGCGGCAAGTTTCTGCAGAGCCGGGCGGAAGCAGC
GGCGGCGGCGGCGGCCGAAGCGGCGGCCGAAGCGGCGGCCGAAGCGTCGA
GCGCCGGAACGCCGACCAGGGCGGCGGTGGATGACGGAGGCGGTGTGAGC
GCGGCGGCGCGGACGGAGTCGTCCTCGGCGGACGACGGGGTGGTGCGGTC
GAAGCGGAAGCGGGAAGAGGGCGGGAGCGACGGCAGCGGCAGCGGCACCG
GCAGCGACAGCGATGACGACGACGGGGAGGGCGGCTCCGCCAAGGCGGCC
TGCGAGCTGGCGGCGGCCGCGGCAGCACGGGCGCAGAAACGACAGAAGGC
GGCGGAAGAGGCGGATGGCGACGGGGACAGCATGAGCGACGACGGAGGCC
ACAACCGTGAGGGGGAAAACGGCGATGGAGGCGGCGACGACGACGAGGAA
GAGGCCGAGTTTGAGGGACCGTCTTCGGCGGCAGCGGCGGGGAAGGGAAT
G
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1202:1470..4820+

>mRNA_P-wetherbeei_contig1202.2.1 ID=mRNA_P-wetherbeei_contig1202.2.1|Name=mRNA_P-wetherbeei_contig1202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1893bp|location=Sequence derived from alignment at P-wetherbeei_contig1202:1470..4820+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGCGAAGACGAGCTTCCGCTACCGCCGCTGGCCCACGTCGATGC
CGTCTGCCTGAAAGGCGATATGCGGGCGCTCGATGACGGGAGGCACATCG
TGAGGGGTCAATGGGCAGCAAATAGGAGGGCTCTGCAGGCCCCCGACGGC
CTGAAGAACGACTTCGATGCCACGAGCTACGGCTCTCCCGGGGAACCTAT
CCCCCGCTGCGGCGAGTACCGCGGCGGCTTCAACATAACGCAGAACAAGA
CGACCAACTACATGGAGGACGTCATGAACTTGACCTTCCAGCCCAACCGG
GCAGGCGGGTTCAACGTGTCGGGCACCGCCAACAATGCGTACGGCGCCTA
CACCATCAGCGGCACAATGACACCCGCCGGGCGGATGGAGATCTTCAAGC
TCATGCCCGGAGCGGCCGGCGCCGACGCCGTGGTCAGCACGGGCGGCGCC
GGCGGCGGACGGAGGCGGAGTGCGCCCAGCGGCGGCGGCAGCGGAGGCTT
TGGCGGCGTGGGAGGGTCTGGCAAGCGCGGCTCCAAGGGCAGCCGTCCCG
GAGCAGTCGGTGCCTCCTCGAAGGGGCCGGCTGTTGACATGCCGCCACCA
CCGCCGCCGGCATTCGGAGCTGGAGGCGTGGGGACCGCCGCACCGGCTGC
GGCCGCCACACGCGCAGGGCCGTTCAGCGGCAGCGACCTTGCTGCCGCAG
GCGGCGACACCGACCCGAAGGCGCTGACGCGGGAGCAGACCGAAAGCTTC
GTGAGCTTCCTTCAGCAGCAGTCGAGAAAGATGCATGCGAACTTCTTCTT
CGAGGCGGTGGACCCGGTCCGCCACGGCGTCCCGGACTACTTCGATGTCA
TCAGCCACCCGATGGACCTCGGGCTGGTGGGCCAGAAGCTCCGGCGGGGC
GACTACCGGACACGGGACGAGTTCTACACAGACGCCCGCCTCGTCTTCCA
GAACGCGCTGCAGTACAACACTAACGACAAGACTATCGTCCACGTCAGCG
CTCTGGAATTCCAGAAAGCTCTGGAGGGAAAGATCCGGAAGATGGAATCG
ACCATCAGCGCGAAGCGGCCGAAATTTCACTCGGTGCAAGCCGCCCCACG
CCCTGCGGCCTTGCCGACGCAAGCAGCGCAGAGGATAGCGAGAGCTGGAG
CAACGGCGGCGGCAGCGACGGCGGATGATGCTGCAGCGTCAACATCGCTG
ACCCGGGAGGAGCTGCTGGAGCTGAAAAGCAGCGTCGAAGCGGTTTTCAA
GGACCAGCGAACGGACATGGACCGGGCCTACGCCTACGTGGCGATGCAGT
ACATCTCCAAGTCGGTGCCCGACGCGGAGAAGCGGCGGGAGGGGAACGAG
TACGTCATCTTGGCGGAAGCCATGCCGCCCAAGGTCGCCCGTCAGCTGCT
CACCATCTGCGGCAAGTTTCTGCAGAGCCGGGCGGAAGCAGCGGCGGCGG
CGGCGGCCGAAGCGGCGGCCGAAGCGGCGGCCGAAGCGTCGAGCGCCGGA
ACGCCGACCAGGGCGGCGGTGGATGACGGAGGCGGTGTGAGCGCGGCGGC
GCGGACGGAGTCGTCCTCGGCGGACGACGGGGTGGTGCGGTCGAAGCGGA
AGCGGGAAGAGGGCGGGAGCGACGGCAGCGGCAGCGGCACCGGCAGCGAC
AGCGATGACGACGACGGGGAGGGCGGCTCCGCCAAGGCGGCCTGCGAGCT
GGCGGCGGCCGCGGCAGCACGGGCGCAGAAACGACAGAAGGCGGCGGAAG
AGGCGGATGGCGACGGGGACAGCATGAGCGACGACGGAGGCCACAACCGT
GAGGGGGAAAACGGCGATGGAGGCGGCGACGACGACGAGGAAGAGGCCGA
GTTTGAGGGACCGTCTTCGGCGGCAGCGGCGGGGAAGGGAATG
back to top