mRNA_P-wetherbeei_contig1202.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1202.1.1
Unique NamemRNA_P-wetherbeei_contig1202.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A6H5JLL6_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.160e-15
Identity = 54/74 (72.97%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  643 RQSTSFVAAAARAVSPAVCRIDIERYV-TTFDDLPFDFSRPPDVEQGQGSGVIFSP-DGLVLTNAHVVAGADKV 858
            R STSFVA AARAVSPAVCRID+ER V T  D  PF      DVE GQGSG+IFS  DGLVLTNAHVVAGA KV
Sbjct:  662 RHSTSFVAVAARAVSPAVCRIDMERLVGTRLDGSPF-----TDVETGQGSGLIFSSEDGLVLTNAHVVAGARKV 730          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: D8LTB3_ECTSI (Trypsin-like serine protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB3_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.730e-15
Identity = 54/74 (72.97%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  643 RQSTSFVAAAARAVSPAVCRIDIERYV-TTFDDLPFDFSRPPDVEQGQGSGVIFSP-DGLVLTNAHVVAGADKV 858
            R STSFVA AARAVSPAVCRID+ER V T  D  PF      DVE GQGSG+IFS  DGLVLTNAHVVAGA KV
Sbjct:  680 RHSTSFVAVAARAVSPAVCRIDMERLVGTRHDGSPF-----TDVETGQGSGLIFSSEDGLVLTNAHVVAGARKV 748          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A7S3DQV5_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DQV5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.240e-9
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  640 RRQSTSFVAAAARAVSPAVCRIDIERYVTTFDDLPF----DFSR-------PPDVEQGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            R+ + SFV  A   V PAV RID E ++ + DD+P      FS        PP V+QGQGSG+I S DGLVLTNAHVV  A KV
Sbjct:  476 RQMALSFVTEAVDKVGPAVLRIDTESHLASSDDMPLLSPQPFSGNGPANQPPPMVQQGQGSGLIISSDGLVLTNAHVVEDATKV 559          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A7S0ZG40_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZG40_9RHOD)

HSP 1 Score: 70.5 bits (171), Expect = 1.670e-9
Identity = 46/88 (52.27%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  640 RRQSTSFVAAAARAVSPAVCRIDIERYVTT------FDDLPFDFSRPPDV---------EQGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            +RQ+TSFV AA RAV PAV RID ER VT       F+D  F      D+         E+GQGSG I S DGLV+TNAHVV  A+KV
Sbjct:  191 KRQTTSFVTAAVRAVGPAVVRIDTERTVTNTGLDPLFEDPLFKKFFGDDLQKQIPKERTERGQGSGFIISRDGLVVTNAHVVKDAEKV 278          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A7S0IP79_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IP79_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 1.870e-9
Identity = 44/84 (52.38%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  628 PTGVRRQSTSFVAAAARAVSPAVCRIDIERYVTTFDDLPFDFSRPPDVEQ-------GQGSGVIFSPDGLVLTNAHVVAGADKV 858
            P  + R+ TSFV AA  AV PAV RID ER V   D  P D    P +E        GQGSGVI S DGL++TNAHVV  A KV
Sbjct:  107 PAAIPRKKTSFVTAAVEAVGPAVVRIDTERLV---DRAPLDSYFFPGLEPDGQRKETGQGSGVILSDDGLIMTNAHVVKNAAKV 187          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A7S1TJS6_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TJS6_9RHOD)

HSP 1 Score: 70.1 bits (170), Expect = 2.040e-9
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  613 PLFPAPTGVRRQSTSFVAAAARAVSPAVCRIDIERYV-----------TTF-----DDLPFDFSRPPD-VEQGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            P+  A +G  + S SFV+ A RAV PAV RID ER +            TF     D++P    +P D +E+GQGSGVI S DGL+LTNAHVVA A+KV
Sbjct:  123 PMEQAKSGTAKNSASFVSRAVRAVGPAVVRIDTERTIHAPSLDPLFEDPTFKRFFGDEIPN--MQPKDRLERGQGSGVIVSKDGLLLTNAHVVADAEKV 219          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: K9YDG2_HALP7 (HtrA2 peptidase n=1 Tax=Halothece sp. (strain PCC 7418) TaxID=65093 RepID=K9YDG2_HALP7)

HSP 1 Score: 69.7 bits (169), Expect = 2.070e-9
Identity = 47/99 (47.47%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  589 PMAPPPLPPLFPAPTGVRRQSTSFVAAAARAVSPAVCRIDIERYVTTFDDLPFDFSR------PPD---VEQGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            P+ P  LP     PT    +++SF+A AA+ V PAV R+D  R V+  +  PF + R      PPD   V +G GSG IFS DGLVLTNAHVV  AD+V
Sbjct:   41 PVQPIQLPDASSRPTNPPLENSSFIARAAQTVGPAVVRLDSARIVSQKEQEPF-YRRFFGEESPPDRRRVREGTGSGFIFSSDGLVLTNAHVVEDADEV 138          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A7S3EMR9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMR9_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 6.190e-9
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  607 LPPLFPAPTGVRRQSTSFVAAAARAVSPAVCRIDIERYVTTFDDLPF------------DFSRPPD--VEQGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            LPP+    +  ++QS+SFV  A ++V P+V RID ER VT  +  P             + ++ P   +E+GQGSG I S DGL++TNAHVV GADKV
Sbjct:  142 LPPITLQESHKKKQSSSFVTRAVQSVGPSVVRIDTERTVTAGNMDPLLEDPLFKKFFGDELNKVPRERLERGQGSGFIISTDGLLITNAHVVKGADKV 239          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: UPI00145C7243 (trypsin-like peptidase domain-containing protein n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145C7243)

HSP 1 Score: 67.4 bits (163), Expect = 1.280e-8
Identity = 42/93 (45.16%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  622 PAPTGVRRQSTSFVAAAARAVSPAVCRIDIERYVTTFDDLPF------------DFSRPPDV--EQGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            PA T  +    SFV+AA   V PAV RID ER +T     PF             FSR P    ++G+GSG I  P+G++LTNAHVV+GAD V
Sbjct:   67 PAATSQKASIRSFVSAAVNRVGPAVVRIDTERTITMRTPDPFFSXXXXXXXXXXXFSRVPQEYHQRGEGSGFIIDPNGMILTNAHVVSGADSV 159          
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Match: A0A7S2DS23_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DS23_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 1.520e-8
Identity = 44/85 (51.76%), Postives = 49/85 (57.65%), Query Frame = 1
Query:  625 APTGVRRQSTSFVAAAARAVSPAVCRIDIERYVTTFDDLPFDFSRPPDVE-------QGQGSGVIFSPDGLVLTNAHVVAGADKV 858
            AP   RRQ TSFV AA  +V PAV RID ER V   D  P +    P +E        GQGSGVI +  GL+LTNAHVV  A KV
Sbjct:  144 APKAARRQKTSFVTAAVSSVGPAVVRIDTERLV---DRQPLEGYLFPGLEPEGQRRESGQGSGVILTEAGLILTNAHVVKNAAKV 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1202.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLL6_9PHAE3.160e-1572.97PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTB3_ECTSI3.730e-1572.97Trypsin-like serine protease n=1 Tax=Ectocarpus si... [more]
A0A7S3DQV5_9STRA1.240e-951.19Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S0ZG40_9RHOD1.670e-952.27Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S0IP79_9EUKA1.870e-952.38Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1TJS6_9RHOD2.040e-948.48Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
K9YDG2_HALP72.070e-947.47HtrA2 peptidase n=1 Tax=Halothece sp. (strain PCC ... [more]
A0A7S3EMR9_9RHOD6.190e-943.88Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
UPI00145C72431.280e-845.16trypsin-like peptidase domain-containing protein n... [more]
A0A7S2DS23_9EUKA1.520e-851.76Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1202contigP-wetherbeei_contig1202:2..1168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTB3
PFAMsPDZ_2,Trypsin_2
Model size1167
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.19e-17
EggNOG OGsCOG0265@1|root,KOG1320@2759|Eukaryota
Descriptionserine-type endopeptidase activity
Cds size765
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.2296507-UTR-P-wetherbeei_contig1202:1..3071683185935.2296507-UTR-P-wetherbeei_contig1202:1..307Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1202 2..307 -
1683185935.2473328-UTR-P-wetherbeei_contig1202:1072..11681683185935.2473328-UTR-P-wetherbeei_contig1202:1072..1168Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1202 1073..1168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.2401278-CDS-P-wetherbeei_contig1202:307..10721683185935.2401278-CDS-P-wetherbeei_contig1202:307..1072Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1202 308..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1202.1.1prot_P-wetherbeei_contig1202.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1202 308..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1202.1.1

>prot_P-wetherbeei_contig1202.1.1 ID=prot_P-wetherbeei_contig1202.1.1|Name=mRNA_P-wetherbeei_contig1202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MRMTSGDAAATSGDPVPDGEPMQDNESSASVAPPPPKRSWLHFRRTYGFI
VLSAYLAVSSLVPGRADRTARQELWSHWQGATAGARSATIASSPWQALRL
HIAGAVASAERAVGGGNVLVRPSPSQHGLGTGVGALGGGNAPEGTKEASM
APPQLLAPQQAPALPMAPPPLPPLFPAPTGVRRQSTSFVAAAARAVSPAV
CRIDIERYVTTFDDLPFDFSRPPDVEQGQGSGVIFSPDGLVLTNAHVVAG
ADKV*
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mRNA from alignment at P-wetherbeei_contig1202:2..1168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1202.1.1 ID=mRNA_P-wetherbeei_contig1202.1.1|Name=mRNA_P-wetherbeei_contig1202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig1202:2..1168- (Phaeothamnion wetherbeei SAG_119_79)
AGTAATTCTGTAGCTCAACTTCATCGAAGGCGGGTCGTTGCATCGCCGAA GAGTGGGTTGCTGGAAGCCCGCTACGGAGGATTGCGCTTGCACGTTATGC GTATGACTAGCGGCGACGCGGCGGCGACGTCGGGCGATCCAGTTCCCGAC GGGGAGCCGATGCAGGACAACGAAAGCAGCGCGTCGGTCGCTCCACCGCC GCCAAAGCGCAGCTGGCTGCACTTCCGACGAACGTACGGCTTTATCGTGC TGAGCGCGTACCTCGCCGTCAGCTCCCTTGTGCCGGGCCGCGCCGATCGC ACCGCTCGCCAGGAGCTCTGGTCGCACTGGCAGGGCGCCACAGCGGGAGC GCGCTCCGCCACCATAGCATCGTCGCCGTGGCAGGCGCTGCGGCTGCACA TCGCTGGCGCCGTCGCGTCGGCCGAGCGCGCTGTCGGCGGCGGAAACGTC TTGGTCCGCCCATCGCCCTCACAGCATGGCCTGGGAACGGGCGTGGGGGC GCTGGGCGGTGGCAACGCGCCGGAAGGGACGAAGGAGGCGTCGATGGCAC CCCCGCAGCTCCTGGCACCGCAGCAAGCGCCGGCGTTGCCGATGGCGCCG CCGCCGCTGCCGCCGCTGTTCCCTGCGCCCACAGGTGTGCGGCGCCAGTC CACAAGCTTCGTGGCGGCCGCCGCCCGCGCCGTGTCCCCCGCGGTCTGCC GCATCGATATCGAGCGGTACGTGACGACGTTTGACGACCTGCCGTTCGAC TTTTCGCGGCCGCCGGATGTGGAGCAGGGCCAGGGCAGCGGCGTCATCTT CAGCCCCGACGGGCTCGTACTGACCAACGCTCACGTCGTCGCTGGCGCCG ACAAGGTGTGAGGCGAAATTGCAATGCGGTGGTTGTAAGGTGTCGGGGGC TCTACTAATGTGTTCTATGTTCTGGGATGTTTGCGGAAGCGGAGGAAGGT GTAGAGCTCTGGATGAACCTCCGCTTGAGTAACCGATGCCGTTATGATCC TGATGAAAGTGATTTCACTCAAAGACTTTAATTTCCCATAGAAACGTTCT CATCGTCGAGTCAGTAAGAGGGATTGAGCGCCGTGTGAGATTTTTTGCGT TTCTCACGCTAGCGATCAATTGCCGCGCTTCTGGTAACGATACCTCGCCG CTCGCGCCGCACTGGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1202:2..1168-

>mRNA_P-wetherbeei_contig1202.1.1 ID=mRNA_P-wetherbeei_contig1202.1.1|Name=mRNA_P-wetherbeei_contig1202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig1202:2..1168- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTATGACTAGCGGCGACGCGGCGGCGACGTCGGGCGATCCAGTTCC
CGACGGGGAGCCGATGCAGGACAACGAAAGCAGCGCGTCGGTCGCTCCAC
CGCCGCCAAAGCGCAGCTGGCTGCACTTCCGACGAACGTACGGCTTTATC
GTGCTGAGCGCGTACCTCGCCGTCAGCTCCCTTGTGCCGGGCCGCGCCGA
TCGCACCGCTCGCCAGGAGCTCTGGTCGCACTGGCAGGGCGCCACAGCGG
GAGCGCGCTCCGCCACCATAGCATCGTCGCCGTGGCAGGCGCTGCGGCTG
CACATCGCTGGCGCCGTCGCGTCGGCCGAGCGCGCTGTCGGCGGCGGAAA
CGTCTTGGTCCGCCCATCGCCCTCACAGCATGGCCTGGGAACGGGCGTGG
GGGCGCTGGGCGGTGGCAACGCGCCGGAAGGGACGAAGGAGGCGTCGATG
GCACCCCCGCAGCTCCTGGCACCGCAGCAAGCGCCGGCGTTGCCGATGGC
GCCGCCGCCGCTGCCGCCGCTGTTCCCTGCGCCCACAGGTGTGCGGCGCC
AGTCCACAAGCTTCGTGGCGGCCGCCGCCCGCGCCGTGTCCCCCGCGGTC
TGCCGCATCGATATCGAGCGGTACGTGACGACGTTTGACGACCTGCCGTT
CGACTTTTCGCGGCCGCCGGATGTGGAGCAGGGCCAGGGCAGCGGCGTCA
TCTTCAGCCCCGACGGGCTCGTACTGACCAACGCTCACGTCGTCGCTGGC
GCCGACAAGGTGTGA
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