mRNA_P-wetherbeei_contig12015.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12015.1.1
Unique NamemRNA_P-wetherbeei_contig12015.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12015.1.1 vs. uniprot
Match: R7T7R2_CAPTE (Phosphatidate phosphatase n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T7R2_CAPTE)

HSP 1 Score: 53.5 bits (127), Expect = 5.720e-6
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:   28 VPGGPVLCTPEALLPRAHAPAPEAQ-KAFVTAALRGLAELFPQDANPLYAGFGSDAGQAAVLRRCGVPEGRVFACQG-GELRGGANRTFR 291
            +P GP+L +P +L+   H    E + + F  + L+ +A LFP+ ANP YAGFG+        R  G+P  RVF     GEL+   + TF+
Sbjct:  664 LPEGPLLLSPSSLMSAFHKEVIERKPEEFKISCLKNIAALFPESANPFYAGFGNKINDTWAYRAVGIPISRVFTVNHRGELKMEFHTTFQ 753
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12015.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7T7R2_CAPTE5.720e-636.67Phosphatidate phosphatase n=1 Tax=Capitella teleta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12015contigP-wetherbeei_contig12015:26..346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G275
PFAMsLNS2,Lipin_N,Lipin_mid
Model size321
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K15728
KEGG ReactionR02239
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.03e-09
EggNOG OGsCOG5083@1|root,KOG2116@2759|Eukaryota
Ec32 ortholog descriptionHaloacid dehalogenase-like hydrolase
Ec32 orthologEc-16_002210.1
EC3.1.3.4
Descriptionphosphatidate phosphatase activity
Cds size321
COG categoryC
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.183724-CDS-P-wetherbeei_contig12015:25..3461683185935.183724-CDS-P-wetherbeei_contig12015:25..346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12015 26..346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12015.1.1prot_P-wetherbeei_contig12015.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12015 26..346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12015.1.1

>prot_P-wetherbeei_contig12015.1.1 ID=prot_P-wetherbeei_contig12015.1.1|Name=mRNA_P-wetherbeei_contig12015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MRPPLPAGGVPGGPVLCTPEALLPRAHAPAPEAQKAFVTAALRGLAELFP
QDANPLYAGFGSDAGQAAVLRRCGVPEGRVFACQGGELRGGANRTFRLVV
HRLLSM*
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mRNA from alignment at P-wetherbeei_contig12015:26..346-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12015.1.1 ID=mRNA_P-wetherbeei_contig12015.1.1|Name=mRNA_P-wetherbeei_contig12015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig12015:26..346- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCCCCGCTGCCCGCCGGGGGCGTGCCAGGGGGCCCGGTGCTGTG
CACGCCGGAGGCGCTGCTGCCACGGGCGCACGCGCCGGCGCCGGAGGCGC
AGAAGGCGTTCGTGACAGCGGCGCTGCGTGGCCTGGCGGAGCTGTTCCCG
CAGGATGCAAACCCGCTCTACGCCGGATTTGGTTCCGACGCGGGGCAGGC
GGCGGTGCTGCGGCGCTGCGGCGTTCCGGAAGGTCGCGTCTTCGCCTGCC
AGGGCGGCGAGCTGCGCGGCGGCGCCAACCGCACCTTCAGGTTGGTAGTG
CATCGCTTGTTGAGCATGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12015:26..346-

>mRNA_P-wetherbeei_contig12015.1.1 ID=mRNA_P-wetherbeei_contig12015.1.1|Name=mRNA_P-wetherbeei_contig12015.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig12015:26..346- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCCCCGCTGCCCGCCGGGGGCGTGCCAGGGGGCCCGGTGCTGTG
CACGCCGGAGGCGCTGCTGCCACGGGCGCACGCGCCGGCGCCGGAGGCGC
AGAAGGCGTTCGTGACAGCGGCGCTGCGTGGCCTGGCGGAGCTGTTCCCG
CAGGATGCAAACCCGCTCTACGCCGGATTTGGTTCCGACGCGGGGCAGGC
GGCGGTGCTGCGGCGCTGCGGCGTTCCGGAAGGTCGCGTCTTCGCCTGCC
AGGGCGGCGAGCTGCGCGGCGGCGCCAACCGCACCTTCAGGTTGGTAGTG
CATCGCTTGTTGAGCATGTAA
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