mRNA_P-wetherbeei_contig12011.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12011.2.1
Unique NamemRNA_P-wetherbeei_contig12011.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12011.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12011contigP-wetherbeei_contig12011:892..1245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1519464.HY22_11025
PFAMsRobl_LC7
Model size354
Max annot lvl1090|Chlorobi
KEGG koko:K07131
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.83e-05
EggNOG OGsCOG2018@1|root,COG2018@2|Bacteria,1FF6K@1090|Chlorobi
DescriptionRoadblock/LC7 domain
Cds size354
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185935.0937119-CDS-P-wetherbeei_contig12011:891..12451683185935.0937119-CDS-P-wetherbeei_contig12011:891..1245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12011 892..1245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12011.2.1prot_P-wetherbeei_contig12011.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12011 892..1245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12011.2.1

>prot_P-wetherbeei_contig12011.2.1 ID=prot_P-wetherbeei_contig12011.2.1|Name=mRNA_P-wetherbeei_contig12011.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
QSEISGLIAILAKTRGVTSIHVVARDGYLVDQSSRDAMPAERVSEFIVEG
LAILEGFAAEPKYWVLECSGGIVVFQIIDARHVLLAVGQAGANFGALRYT
MDKMRPQFGQFLGGVDE*
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mRNA from alignment at P-wetherbeei_contig12011:892..1245-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12011.2.1 ID=mRNA_P-wetherbeei_contig12011.2.1|Name=mRNA_P-wetherbeei_contig12011.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig12011:892..1245- (Phaeothamnion wetherbeei SAG_119_79)
CAGAGTGAGATATCGGGACTTATCGCAATCCTGGCCAAGACTCGCGGAGT
TACCTCGATCCACGTAGTGGCTCGCGATGGTTACCTCGTCGACCAATCCT
CGCGGGATGCCATGCCGGCCGAGCGCGTCAGCGAATTCATCGTGGAAGGT
TTGGCCATCCTGGAAGGTTTTGCTGCTGAGCCCAAATACTGGGTCCTGGA
GTGCAGCGGTGGCATTGTCGTCTTCCAGATTATCGATGCTCGCCACGTGC
TGCTTGCAGTAGGTCAGGCGGGAGCAAACTTTGGCGCACTCCGCTACACG
ATGGACAAGATGCGGCCACAGTTTGGGCAATTCCTCGGTGGAGTGGATGA
GTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12011:892..1245-

>mRNA_P-wetherbeei_contig12011.2.1 ID=mRNA_P-wetherbeei_contig12011.2.1|Name=mRNA_P-wetherbeei_contig12011.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig12011:892..1245- (Phaeothamnion wetherbeei SAG_119_79)
CAGAGTGAGATATCGGGACTTATCGCAATCCTGGCCAAGACTCGCGGAGT
TACCTCGATCCACGTAGTGGCTCGCGATGGTTACCTCGTCGACCAATCCT
CGCGGGATGCCATGCCGGCCGAGCGCGTCAGCGAATTCATCGTGGAAGGT
TTGGCCATCCTGGAAGGTTTTGCTGCTGAGCCCAAATACTGGGTCCTGGA
GTGCAGCGGTGGCATTGTCGTCTTCCAGATTATCGATGCTCGCCACGTGC
TGCTTGCAGTAGGTCAGGCGGGAGCAAACTTTGGCGCACTCCGCTACACG
ATGGACAAGATGCGGCCACAGTTTGGGCAATTCCTCGGTGGAGTGGATGA
GTAG
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