mRNA_P-wetherbeei_contig12008.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12008.2.1
Unique NamemRNA_P-wetherbeei_contig12008.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: UPI001BA7A1E5 (glutathione S-transferase family protein n=7 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA7A1E5)

HSP 1 Score: 241 bits (615), Expect = 1.850e-79
Identity = 114/124 (91.94%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDSVGPNPRIVRMFMAEKGI+MPKQTVDLRKGENREAEHLKRN HGQMPALELD+GSYLSEVIPICEYLEEK P+PAM+G T EERAECRMWTRRVDLNICEH+ NGFRFGEGLKFFEKRI
Sbjct:    1 MKLYDSVGPNPRIVRMFMAEKGIEMPKQTVDLRKGENREAEHLKRNPHGQMPALELDNGSYLSEVIPICEYLEEKTPAPAMIGTTPEERAECRMWTRRVDLNICEHLANGFRFGEGLKFFEKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: A0A1M6WE56_9BRAD (Glutathione S-transferase n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1M6WE56_9BRAD)

HSP 1 Score: 233 bits (595), Expect = 2.120e-76
Identity = 106/124 (85.48%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDS+GPNPR+VRMFMAEKG++MP+Q VDLRKGENREAEHLKRN HGQMP LELDDG YLSE+  ICEYLEEKNP PAM+GATAEERAECRMWTRRVDLNICEH+GNG+RFGEGLKFF+ RI
Sbjct:    1 MKLYDSIGPNPRVVRMFMAEKGVEMPRQAVDLRKGENREAEHLKRNPHGQMPTLELDDGHYLSEITAICEYLEEKNPKPAMIGATAEERAECRMWTRRVDLNICEHLGNGYRFGEGLKFFQSRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: A0A0R3KTU9_9BRAD (Glutathione S-transferase n=12 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3KTU9_9BRAD)

HSP 1 Score: 233 bits (594), Expect = 3.020e-76
Identity = 109/124 (87.90%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MK YDSVGPNPRIVRMFMAEKGI+MPKQ VDLRKGENREAEHLKRN HGQMP LELD+G+YLSE+  ICEYLEEK+P+P M+GAT EERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI
Sbjct:    1 MKFYDSVGPNPRIVRMFMAEKGIEMPKQAVDLRKGENREAEHLKRNPHGQMPTLELDNGNYLSEITAICEYLEEKHPNPPMIGATPEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: A0A1M6Q0F6_9BRAD (Glutathione S-transferase n=2 Tax=Bradyrhizobium TaxID=374 RepID=A0A1M6Q0F6_9BRAD)

HSP 1 Score: 225 bits (573), Expect = 4.590e-73
Identity = 106/124 (85.48%), Postives = 115/124 (92.74%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDS+GPNPRIVRMFMAEKGI+MPKQTVDLR GENR+AEHLKRN HGQMP LELDDGSYLSE+I ICEYLEEK+PSPAM+GAT E+RAECRMWTRRVDLNI E + NG+RFGE LKFFEKRI
Sbjct:    1 MKLYDSIGPNPRIVRMFMAEKGIEMPKQTVDLRGGENRQAEHLKRNPHGQMPTLELDDGSYLSEIIAICEYLEEKDPSPAMIGATPEQRAECRMWTRRVDLNIAEPLANGYRFGEALKFFEKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: A0A533IZB9_9BRAD (Glutathione S-transferase family protein n=1 Tax=Bradyrhizobium icense TaxID=1274631 RepID=A0A533IZB9_9BRAD)

HSP 1 Score: 224 bits (572), Expect = 6.730e-73
Identity = 104/124 (83.87%), Postives = 114/124 (91.94%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDS+GPNP IVRMFMAEKGI++P+QTVDLRKGENREAEHLKRN HGQMP LELDDGSYLSE+  ICEYLEEKNPSP M+G+T EERAECRMWTRRVDLNICE + NG+R+GE LKFFEKRI
Sbjct:    1 MKLYDSIGPNPHIVRMFMAEKGIEIPRQTVDLRKGENREAEHLKRNPHGQMPTLELDDGSYLSEITAICEYLEEKNPSPPMIGSTPEERAECRMWTRRVDLNICEPLANGYRYGEALKFFEKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: A0A525KDZ2_BRASZ (Glutathione S-transferase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A525KDZ2_BRASZ)

HSP 1 Score: 223 bits (568), Expect = 2.650e-72
Identity = 103/124 (83.06%), Postives = 115/124 (92.74%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDS+GPNPRIVRMFMAEKGI+MP+QTVDLR GENR+ EHLKRN HGQMPALELDDGSYLSE+  ICEYLEEKNP PA++G+TAEERAECRMWTRR+DLNI E + NG+RFGEGLKFF+KRI
Sbjct:    1 MKLYDSIGPNPRIVRMFMAEKGIEMPRQTVDLRGGENRQEEHLKRNPHGQMPALELDDGSYLSEITAICEYLEEKNPKPAVIGSTAEERAECRMWTRRIDLNIAEPLANGYRFGEGLKFFQKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: A0A7S9CQI3_9BRAD (Glutathione S-transferase family protein n=1 Tax=Bradyrhizobium genosp. L TaxID=83637 RepID=A0A7S9CQI3_9BRAD)

HSP 1 Score: 222 bits (566), Expect = 5.510e-72
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MK YDS+GPNPRIVR FMAEKGI+MP+QTVDLRKGENRE  HLKRN HGQMP LELDDGSYLSE++PICEYLEEK+P+PAM+GAT EERAECRMWTRRVDLNI E + NG+RFGE LKFFEKRI
Sbjct:    1 MKFYDSIGPNPRIVRWFMAEKGIEMPRQTVDLRKGENREEAHLKRNPHGQMPTLELDDGSYLSEIVPICEYLEEKHPAPAMIGATPEERAECRMWTRRVDLNIAEPLANGYRFGEALKFFEKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: UPI001BAA617A (glutathione S-transferase n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BAA617A)

HSP 1 Score: 222 bits (565), Expect = 7.820e-72
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MK YDSVGPNPRIVRMFMAEKGI+MPKQTVD+R GENREA HLKRN HGQMP LELDDG Y+SE+IPICEYLEEK P+PA++G+TAEERAECRMWTRR+DLNICE + NGFRF EGLK FEKRI
Sbjct:    1 MKFYDSVGPNPRIVRMFMAEKGIEMPKQTVDVRGGENREAAHLKRNPHGQMPTLELDDGVYVSEIIPICEYLEEKTPAPAVIGSTAEERAECRMWTRRIDLNICEPLANGFRFSEGLKLFEKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: UPI00131B3A93 (glutathione S-transferase family protein n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI00131B3A93)

HSP 1 Score: 217 bits (553), Expect = 5.070e-70
Identity = 100/124 (80.65%), Postives = 111/124 (89.52%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDS+GPNPRIVRMFMAEKGIDMP+Q VDLRKGENREA+HL+RN HGQMP LELDDGSYLSE+  ICEYLEEK P+P M+G T E RAECRMWTRRVDLNICE + NG+RFGE L+FF+KRI
Sbjct:    1 MKLYDSIGPNPRIVRMFMAEKGIDMPRQAVDLRKGENREADHLRRNPHGQMPTLELDDGSYLSEITAICEYLEEKYPAPPMIGGTPEARAECRMWTRRVDLNICEPLANGYRFGEALRFFQKRI 124
[Close]
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Match: UPI001BA6711C (glutathione S-transferase family protein n=1 Tax=Bradyrhizobium jicamae TaxID=280332 RepID=UPI001BA6711C)

HSP 1 Score: 217 bits (552), Expect = 7.430e-70
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 1 
Query:    1 MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQMPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVDLNICEHMGNGFRFGEGLKFFEKRI 372
            MKLYDS+GPNPRIVRMFMAEKGI++PKQTVDLR GENR+  HLKRN HGQMP LELD+GSYLSEV+PICEYLEEK+PSPAM+G TAEERAE RMWTRR+DLNI E + NG+RFGE LKFFEKRI
Sbjct:    1 MKLYDSIGPNPRIVRMFMAEKGIEIPKQTVDLRGGENRQEAHLKRNPHGQMPTLELDNGSYLSEVVPICEYLEEKHPSPAMIGTTAEERAESRMWTRRLDLNIAEPLANGYRFGEALKFFEKRI 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12008.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BA7A1E51.850e-7991.94glutathione S-transferase family protein n=7 Tax=B... [more]
A0A1M6WE56_9BRAD2.120e-7685.48Glutathione S-transferase n=3 Tax=Bradyrhizobiacea... [more]
A0A0R3KTU9_9BRAD3.020e-7687.90Glutathione S-transferase n=12 Tax=Bradyrhizobium ... [more]
A0A1M6Q0F6_9BRAD4.590e-7385.48Glutathione S-transferase n=2 Tax=Bradyrhizobium T... [more]
A0A533IZB9_9BRAD6.730e-7383.87Glutathione S-transferase family protein n=1 Tax=B... [more]
A0A525KDZ2_BRASZ2.650e-7283.06Glutathione S-transferase n=2 Tax=Alphaproteobacte... [more]
A0A7S9CQI3_9BRAD5.510e-7283.06Glutathione S-transferase family protein n=1 Tax=B... [more]
UPI001BAA617A7.820e-7283.06glutathione S-transferase n=1 Tax=Bradyrhizobium j... [more]
UPI00131B3A935.070e-7080.65glutathione S-transferase family protein n=1 Tax=B... [more]
UPI001BA6711C7.430e-7082.26glutathione S-transferase family protein n=1 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12008contigP-wetherbeei_contig12008:1681..2052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1038859.AXAU01000027_gene2204
PFAMsGST_C,GST_C_2,GST_N,GST_N_3
Model size372
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.16e-75
EggNOG OGsCOG0625@1|root,COG0625@2|Bacteria,1Q05U@1224|Proteobacteria,2TTDK@28211|Alphaproteobacteria,3JVWD@41294|Bradyrhizobiaceae
DescriptionGlutathione S-transferase, C-terminal domain
Cds size372
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185934.9272501-CDS-P-wetherbeei_contig12008:1680..20521683185934.9272501-CDS-P-wetherbeei_contig12008:1680..2052Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12008 1681..2052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12008.2.1prot_P-wetherbeei_contig12008.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12008 1681..2052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12008.2.1

>prot_P-wetherbeei_contig12008.2.1 ID=prot_P-wetherbeei_contig12008.2.1|Name=mRNA_P-wetherbeei_contig12008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MKLYDSVGPNPRIVRMFMAEKGIDMPKQTVDLRKGENREAEHLKRNAHGQ
MPALELDDGSYLSEVIPICEYLEEKNPSPAMVGATAEERAECRMWTRRVD
LNICEHMGNGFRFGEGLKFFEKRI
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mRNA from alignment at P-wetherbeei_contig12008:1681..2052+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12008.2.1 ID=mRNA_P-wetherbeei_contig12008.2.1|Name=mRNA_P-wetherbeei_contig12008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig12008:1681..2052+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACTTTACGACTCGGTCGGACCCAACCCGCGCATCGTCCGGATGTT
CATGGCGGAGAAGGGCATCGACATGCCGAAGCAGACGGTCGATCTGCGCA
AGGGTGAAAATCGCGAGGCAGAGCATCTGAAGCGCAATGCGCATGGCCAG
ATGCCAGCGCTCGAACTCGATGACGGCAGTTACCTCTCCGAGGTGATTCC
GATCTGCGAATATCTCGAAGAGAAAAATCCCTCGCCAGCGATGGTCGGGG
CGACGGCGGAAGAACGCGCCGAATGCCGGATGTGGACCCGTCGCGTCGAC
CTCAACATCTGCGAGCATATGGGCAATGGCTTCCGCTTCGGCGAGGGCCT
GAAATTCTTCGAGAAGCGAATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12008:1681..2052+

>mRNA_P-wetherbeei_contig12008.2.1 ID=mRNA_P-wetherbeei_contig12008.2.1|Name=mRNA_P-wetherbeei_contig12008.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig12008:1681..2052+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACTTTACGACTCGGTCGGACCCAACCCGCGCATCGTCCGGATGTT
CATGGCGGAGAAGGGCATCGACATGCCGAAGCAGACGGTCGATCTGCGCA
AGGGTGAAAATCGCGAGGCAGAGCATCTGAAGCGCAATGCGCATGGCCAG
ATGCCAGCGCTCGAACTCGATGACGGCAGTTACCTCTCCGAGGTGATTCC
GATCTGCGAATATCTCGAAGAGAAAAATCCCTCGCCAGCGATGGTCGGGG
CGACGGCGGAAGAACGCGCCGAATGCCGGATGTGGACCCGTCGCGTCGAC
CTCAACATCTGCGAGCATATGGGCAATGGCTTCCGCTTCGGCGAGGGCCT
GAAATTCTTCGAGAAGCGAATC
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