mRNA_P-wetherbeei_contig11983.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11983.1.1
Unique NamemRNA_P-wetherbeei_contig11983.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: D7G3E6_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 4.140e-37
Identity = 65/114 (57.02%), Postives = 88/114 (77.19%), Query Frame = 3
Query:  177 FRQSPNTMRELSWVGPVGPGGAPPLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHDALQLNLDD 518
            F Q+PN + EL ++ PV   G   LDRS I H+L+MGE+++AV+ DDFELG +R PLE AV +YDT+ + VVL+RARCG++AV+VVPLVP + +C++LG +Y   DALQLNLDD
Sbjct:  187 FVQTPNPVLELEYLRPVNSNGR-RLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEYKEKDALQLNLDD 299          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: A0A835Z3P7_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3P7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.130e-35
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  177 FRQSPNTMRELSWVGPVGPGGAPPLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHDALQLNLDDH 521
            F QSPN++ EL+++GPV   G   L RS + HY++ GE++EAV+ DDFEL T+R PLE A+A  D +R+ VVL RARCG++ V+ +PLVP+  +C+ L  DY   DALQLNLD+H
Sbjct:  165 FVQSPNSLLELNYMGPVTSAGR-ALQRSLVLHYMSPGEFVEAVMQDDFELMTVRTPLEAAIAAADAQREVVVLMRARCGYICVVTMPLVPEIAVCRALAGDYEGRDALQLNLDEH 278          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: A0A7S2A9V4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9V4_TRICV)

HSP 1 Score: 104 bits (260), Expect = 3.140e-24
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 3
Query:  177 FRQSPNTMRELSWVGPVGPGGAP-PLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAH-----HDALQLNLDD 518
            F QS  T+ ELS   P  P G P   +RS + H+LTMGEY   V  DDFE+ ++R  L+ AV  YD  ++A VL R RCGH+AV +  LVP++G+CK LG +Y         ++QLNLDD
Sbjct:  149 FVQSGCTLAELSLPNPKRPDGRPLGRERSVLMHFLTMGEYDLEVCRDDFEMASVRGELKDAVKAYDERKEAAVLVRFRCGHVAVGLATLVPEYGVCKALGREYYQGTVGAEGSVQLNLDD 268          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.970e-23
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  177 FRQSPNTMRELSWVGPVGPGGAPPLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHD---ALQLNLDD 518
            F Q+  T+++LS   P    G   + RS + H+LT+GE+   V  +DFEL  +R PL+ A+ +Y+TE++ V+L R RCG++++    LVPD+GICK+LG+DY   +   A+QLNLDD
Sbjct:  111 FLQTDKTLQDLSVYIPKDCTGH-TVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDYYAENPAGAVQLNLDD 226          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: A0A7S0UGY3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UGY3_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.160e-23
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  177 FRQSPNTMRELSWVGPVGPGGAPPLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHD---ALQLNLDD 518
            F Q+  T+ ++S   P    G   + RS + H+LT+GE+   V   DFEL  +R PL++AV TYDTE++ V+L R RCG++++    LVPD+ ICK+LG+DY   +   ALQLNLDD
Sbjct:  131 FLQTDRTLEDMSLYIPKDCTGH-TITRSVLLHFLTLGEFDSEVCRTDFELALMRTPLKEAVETYDTEQEVVLLCRYRCGNMSLGRAALVPDYRICKKLGQDYYSENSAGALQLNLDD 246          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: A0A7S2R2L0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2L0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.060e-23
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  255 RSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDY------AHHDALQLNLDD 518
            RS + HYLT+GE+   V  DDFEL T+R  L++AV ++D E+  VVL R RCGH+AV   PLVPD+G+CK LG+ Y      A   A+QLNLDD
Sbjct:  188 RSVLLHYLTLGEFDSEVCRDDFELATVRDRLKQAVDSHDIEKDMVVLMRFRCGHVAVGTAPLVPDYGLCKSLGQQYYGTGEGASSGAIQLNLDD 281          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.800e-23
Identity = 54/118 (45.76%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  177 FRQSPNTMRELSWVGPVGPGGAPPLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHD----ALQLNLDD 518
            F QS  ++R+LS   P    G     RS + H+LT+GEY   V  DDFE+   R  L + V  YD E++ V+L+R RCGH+AV    LVPD+GICK+LG DY   +    A+QLNLD+
Sbjct:  152 FVQSNMSLRDLSIPIPKDVTGVAMPRRSILMHFLTLGEYDSEVCRDDFEMAEARTKLSQIVEEYDEEKEVVLLYRMRCGHVAVGRAVLVPDYGICKQLGRDYYDSNNSAGAVQLNLDE 269          
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Match: K0TEP8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEP8_THAOC)

HSP 1 Score: 73.6 bits (179), Expect = 6.660e-14
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  246 PLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPLEKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHD----ALQLNLDD 518
            P  RS + H+LTM E+ + +  +DFEL ++++ L++AV  +D+        R    H+ + +VPLVPDF +CK LGE Y  +     ALQLN+DD
Sbjct:   15 PKQRSILLHWLTMEEFSKELAMEDFELASVKKELKEAVEDHDS--------RPSNTHVGLGIVPLVPDFNLCKCLGEQYFGNGEASGALQLNIDD 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11983.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G3E6_ECTSI4.140e-3757.02MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A835Z3P7_9STRA4.130e-3553.04MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2A9V4_TRICV3.140e-2446.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FEW3_9STRA1.970e-2343.59MYND-type domain-containing protein (Fragment) n=1... [more]
A0A7S0UGY3_9STRA2.160e-2345.30Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2R2L0_9STRA3.060e-2353.19Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0F684_9STRA4.800e-2345.76Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
K0TEP8_THAOC6.660e-1440.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11983contigP-wetherbeei_contig11983:62..594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3E6
PFAMszf-MYND
Model size533
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.86e-36
EggNOG OGs2CYFZ@1|root,2S44W@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006550.1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.910923-UTR-P-wetherbeei_contig11983:61..2581683185933.910923-UTR-P-wetherbeei_contig11983:61..258Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11983 62..258 +
1683185933.9305115-UTR-P-wetherbeei_contig11983:585..5941683185933.9305115-UTR-P-wetherbeei_contig11983:585..594Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11983 586..594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.9215088-CDS-P-wetherbeei_contig11983:258..5851683185933.9215088-CDS-P-wetherbeei_contig11983:258..585Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11983 259..585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11983.1.1prot_P-wetherbeei_contig11983.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11983 259..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11983.1.1

>prot_P-wetherbeei_contig11983.1.1 ID=prot_P-wetherbeei_contig11983.1.1|Name=mRNA_P-wetherbeei_contig11983.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MRELSWVGPVGPGGAPPLDRSCIFHYLTMGEYLEAVVSDDFELGTLRRPL
EKAVATYDTERQAVVLWRARCGHLAVLVVPLVPDFGICKRLGEDYAHHDA
LQLNLDDH*
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mRNA from alignment at P-wetherbeei_contig11983:62..594+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11983.1.1 ID=mRNA_P-wetherbeei_contig11983.1.1|Name=mRNA_P-wetherbeei_contig11983.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=533bp|location=Sequence derived from alignment at P-wetherbeei_contig11983:62..594+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCTCCCCACCCCCAACCGCCGCCGCCGCCACCGCGGCTACCGCCGTCG CCGCTGCCGCTGCTTCCGTCGTGCCGCCTCCTTCTTTCTGCCGCCGCGGC TACCGCTGTCGCCGCCATCCCCGCCGCCTCCGAGGCCTTCCTTTTCCTGC TATCTCCTGCCCGCTGCCTTCCGTCCTTCCGCCAGTCGCCCAACACGATG CGGGAGCTGTCGTGGGTCGGCCCCGTCGGTCCCGGCGGCGCCCCGCCGCT CGACCGCTCGTGCATTTTCCACTACTTGACCATGGGCGAGTACCTCGAGG CCGTCGTCTCAGACGACTTCGAGCTCGGGACGCTGCGACGGCCGCTGGAG AAGGCCGTGGCGACGTACGATACGGAGCGGCAGGCGGTGGTGCTGTGGCG GGCGCGCTGCGGCCACCTGGCAGTGCTGGTGGTGCCGCTGGTGCCCGACT TTGGCATTTGCAAGCGGCTGGGGGAAGATTACGCGCACCACGATGCGCTC CAGCTAAATTTAGACGACCACTGAATGAATTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11983:62..594+

>mRNA_P-wetherbeei_contig11983.1.1 ID=mRNA_P-wetherbeei_contig11983.1.1|Name=mRNA_P-wetherbeei_contig11983.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig11983:62..594+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGAGCTGTCGTGGGTCGGCCCCGTCGGTCCCGGCGGCGCCCCGCC
GCTCGACCGCTCGTGCATTTTCCACTACTTGACCATGGGCGAGTACCTCG
AGGCCGTCGTCTCAGACGACTTCGAGCTCGGGACGCTGCGACGGCCGCTG
GAGAAGGCCGTGGCGACGTACGATACGGAGCGGCAGGCGGTGGTGCTGTG
GCGGGCGCGCTGCGGCCACCTGGCAGTGCTGGTGGTGCCGCTGGTGCCCG
ACTTTGGCATTTGCAAGCGGCTGGGGGAAGATTACGCGCACCACGATGCG
CTCCAGCTAAATTTAGACGACCACTGA
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