mRNA_P-wetherbeei_contig11961.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11961.1.1
Unique NamemRNA_P-wetherbeei_contig11961.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: UPI0019B11715 (Nuclear transport factor 2 family protein n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019B11715)

HSP 1 Score: 216 bits (550), Expect = 1.720e-70
Identity = 105/111 (94.59%), Postives = 107/111 (96.40%), Query Frame = 1
Query:    1 AKGKVQLLAGMANIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKAPTKLIEKYKNAE 333
            AKGK QLLAGMAN+RVYEDGTPRTRHTTTNIDL IDE AGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDM AHVKAPTKLIEKY+NAE
Sbjct:   43 AKGKDQLLAGMANVRVYEDGTPRTRHTTTNIDLKIDEVAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMRAHVKAPTKLIEKYENAE 153          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A293NKH0_9GAMM (SnoaL-like domain-containing protein n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A293NKH0_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 2.990e-40
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 1
Query:    7 GKVQLLAGMANIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKAPTKLI 312
            G  Q+L  ++ +R+YEDGTPRT+H  +N+DL IDE   +AKSQCYVTVFQQT++FPLQ IF GHYFD F+R +GVW+F +R+IR+ +VGD+SAH+  P  ++
Sbjct:   45 GTQQVLDALSTVRIYEDGTPRTKHIVSNLDLEIDEVNNSAKSQCYVTVFQQTNDFPLQAIFCGHYFDRFQRVEGVWQFSQRIIRYMMVGDLSAHLNEPESVV 146          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A7Y3M6X1_9DELT (Nuclear transport factor 2 family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3M6X1_9DELT)

HSP 1 Score: 137 bits (344), Expect = 3.460e-39
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1
Query:   40 IRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKAPTKLI 312
            I +YEDGTPRT+H  +N+DLAIDE AGTA ++ Y+T++QQT EFPLQV F GHYFDDFER DG WRF KR+IR+ LVGD+SAH++AP  +I
Sbjct:   56 IIIYEDGTPRTKHFVSNVDLAIDEAAGTATAESYLTLYQQTDEFPLQVCFVGHYFDDFERVDGSWRFAKRVIRNSLVGDLSAHLRAPGSVI 146          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A3C0KXJ9_9GAMM (Nuclear transport factor 2 family protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3C0KXJ9_9GAMM)

HSP 1 Score: 119 bits (299), Expect = 2.090e-32
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 AKGKVQLLAGMANIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKAPT 303
            A+G+V     M N+ +YEDGTPRT+H  TN+ L ID+ AGTA   CYVTV+QQT EFPLQ IF G YFD F  A   W F +R IR+ L+GDM AH+K P+
Sbjct:   37 AEGRVPGPESMNNMILYEDGTPRTKHVITNLTLDIDDAAGTASGHCYVTVYQQTPEFPLQAIFVGEYFDTFLHAAQGWAFSQREIRNSLIGDMRAHLKTPS 137          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A2D7G2J7_9GAMM (SnoaL-like domain-containing protein n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2D7G2J7_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 2.550e-31
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   37 NIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKAPT 303
            N+ +YEDGTPRT+H  +N+ + +D  A  A+   YVTV+QQ SE PLQVIF+G YFD+FER +G WRFK R IRH L+GD+  H+K P+
Sbjct:   49 NVILYEDGTPRTKHIVSNVTIEVDAAADCARGHSYVTVYQQVSERPLQVIFAGEYFDEFERQEGAWRFKSRDIRHPLIGDLRGHLKLPS 137          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A1V4E9X2_9ACTN (SnoaL-like domain-containing protein n=1 Tax=Streptomyces sp. GKU 895 TaxID=1662404 RepID=A0A1V4E9X2_9ACTN)

HSP 1 Score: 106 bits (265), Expect = 3.310e-27
Identity = 51/91 (56.04%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   37 NIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKA-PTK 306
            ++ +YEDGTPRT+H TTNI + I E+AGTA ++ YVTVFQ   +FPLQ + +G Y D FERADG WRF +R +R  LVGD+S H++  PT+
Sbjct:   59 SVILYEDGTPRTQHVTTNIAVDIHEEAGTAAARSYVTVFQALPDFPLQPVAAGRYSDRFERADGHWRFTERRVRIHLVGDVSRHLRGQPTR 149          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A7X4IV39_9RHOB (Nuclear transport factor 2 family protein n=1 Tax=Boseongicola sp. SB0675_bin_26 TaxID=2604849 RepID=A0A7X4IV39_9RHOB)

HSP 1 Score: 106 bits (264), Expect = 3.760e-27
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    4 KGKVQLLAGMAN-IRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVK 294
            +G+ +L   + + + +Y+DGTPRTRH +TNI+L IDE AG AK Q YV V+QQT  FPLQ I+SG Y D+F R DG W++    IR    GD+S H++
Sbjct:   44 RGREELFKNVVSRVIIYDDGTPRTRHLSTNIELEIDEDAGRAKCQRYVMVYQQTDGFPLQAIYSGRYLDEFTRQDGGWQYSSCTIRDPFFGDVSRHIR 141          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A5N0UZT8_9PSEU (Nuclear transport factor 2 family protein n=1 Tax=Amycolatopsis acidicola TaxID=2596893 RepID=A0A5N0UZT8_9PSEU)

HSP 1 Score: 105 bits (262), Expect = 8.210e-27
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   46 VYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVK 294
            V+EDGTPRT+H TTN+ + +DE AGTA ++ YVTV Q  ++FPLQ I +G Y+D FER DGVWRF  R ++   VGD+S H++
Sbjct:   59 VHEDGTPRTQHVTTNVQIEVDELAGTASARSYVTVLQAATDFPLQTIVAGRYYDRFERLDGVWRFVDRRVKITHVGDVSRHLR 141          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: A0A285DNP8_9ACTN (SnoaL-like protein n=1 Tax=Streptomyces sp. TLI_55 TaxID=1938861 RepID=A0A285DNP8_9ACTN)

HSP 1 Score: 105 bits (261), Expect = 1.200e-26
Identity = 46/86 (53.49%), Postives = 65/86 (75.58%), Query Frame = 1
Query:   37 NIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVK 294
            ++ +YEDGTPRT+H TTN+ + +DE+AGTA ++ YVTVFQ   +FPLQ + +G Y D FER DG WRF +R ++  LVGD+S H++
Sbjct:   59 SVILYEDGTPRTQHVTTNLAVQVDEEAGTAAARSYVTVFQALPDFPLQAVAAGRYRDRFERRDGRWRFTERRVQIHLVGDVSRHLR 144          
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Match: UPI0018813DC5 (nuclear transport factor 2 family protein n=1 Tax=Streptomyces justiciae TaxID=2780140 RepID=UPI0018813DC5)

HSP 1 Score: 103 bits (258), Expect = 3.400e-26
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   37 NIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQVIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKA 297
            ++ +YEDGTPRT+H TTNI + +DE+AGTA ++ YV+V Q   +FPLQ + +G Y D FER DG WRF +R +R  LVGD+S H++A
Sbjct:   59 SVILYEDGTPRTQHVTTNIIVDVDEEAGTAAARSYVSVLQALPDFPLQPVAAGRYSDRFERRDGRWRFTERRVRIHLVGDVSRHLRA 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11961.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019B117151.720e-7094.59Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A293NKH0_9GAMM2.990e-4057.84SnoaL-like domain-containing protein n=2 Tax=Porti... [more]
A0A7Y3M6X1_9DELT3.460e-3967.03Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A3C0KXJ9_9GAMM2.090e-3256.44Nuclear transport factor 2 family protein n=2 Tax=... [more]
A0A2D7G2J7_9GAMM2.550e-3156.18SnoaL-like domain-containing protein n=2 Tax=uncla... [more]
A0A1V4E9X2_9ACTN3.310e-2756.04SnoaL-like domain-containing protein n=1 Tax=Strep... [more]
A0A7X4IV39_9RHOB3.760e-2750.00Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A5N0UZT8_9PSEU8.210e-2755.42Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A285DNP8_9ACTN1.200e-2653.49SnoaL-like protein n=1 Tax=Streptomyces sp. TLI_55... [more]
UPI0018813DC53.400e-2654.02nuclear transport factor 2 family protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11961contigP-wetherbeei_contig11961:1..336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1157638.KB892168_gene6600
PFAMsSnoaL_4
Model size336
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-26
EggNOG OGsCOG5517@1|root,COG5517@2|Bacteria,2IIIU@201174|Actinobacteria
DescriptionSnoaL-like domain
Cds size306
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.062694-UTR-P-wetherbeei_contig11961:0..301683185933.062694-UTR-P-wetherbeei_contig11961:0..30Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11961 1..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185933.0725543-CDS-P-wetherbeei_contig11961:30..3361683185933.0725543-CDS-P-wetherbeei_contig11961:30..336Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11961 31..336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11961.1.1prot_P-wetherbeei_contig11961.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11961 31..336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11961.1.1

>prot_P-wetherbeei_contig11961.1.1 ID=prot_P-wetherbeei_contig11961.1.1|Name=mRNA_P-wetherbeei_contig11961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MANIRVYEDGTPRTRHTTTNIDLAIDEKAGTAKSQCYVTVFQQTSEFPLQ
VIFSGHYFDDFERADGVWRFKKRLIRHQLVGDMSAHVKAPTKLIEKYKNA
E*
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mRNA from alignment at P-wetherbeei_contig11961:1..336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11961.1.1 ID=mRNA_P-wetherbeei_contig11961.1.1|Name=mRNA_P-wetherbeei_contig11961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig11961:1..336+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAAGGGAAAAGTCCAATTGTTGGCCGGAATGGCAAACATCCGAGTATA TGAAGACGGAACTCCCCGAACCCGGCACACGACGACCAATATAGACTTGG CAATTGACGAAAAGGCCGGCACCGCGAAGAGCCAGTGCTACGTAACGGTA TTTCAACAGACTTCAGAATTCCCTCTCCAAGTCATATTCTCCGGGCACTA CTTTGACGATTTTGAGAGAGCGGATGGAGTATGGCGCTTCAAGAAGCGGC TAATCCGACATCAGCTAGTTGGAGACATGAGCGCTCATGTCAAAGCCCCA ACAAAGCTGATAGAGAAGTATAAGAATGCTGAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11961:1..336+

>mRNA_P-wetherbeei_contig11961.1.1 ID=mRNA_P-wetherbeei_contig11961.1.1|Name=mRNA_P-wetherbeei_contig11961.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig11961:1..336+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAAACATCCGAGTATATGAAGACGGAACTCCCCGAACCCGGCACAC
GACGACCAATATAGACTTGGCAATTGACGAAAAGGCCGGCACCGCGAAGA
GCCAGTGCTACGTAACGGTATTTCAACAGACTTCAGAATTCCCTCTCCAA
GTCATATTCTCCGGGCACTACTTTGACGATTTTGAGAGAGCGGATGGAGT
ATGGCGCTTCAAGAAGCGGCTAATCCGACATCAGCTAGTTGGAGACATGA
GCGCTCATGTCAAAGCCCCAACAAAGCTGATAGAGAAGTATAAGAATGCT
GAATAA
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