mRNA_P-wetherbeei_contig11959.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11959.2.1
Unique NamemRNA_P-wetherbeei_contig11959.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11959.2.1 vs. uniprot
Match: D8LGE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE3_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.440e-13
Identity = 94/330 (28.48%), Postives = 136/330 (41.21%), Query Frame = 2 
Query:  209 LGLNNKQNKQATQSTRDKEDAMVANLLADTPLSLLFAATNLAFA-AFDEGRTKVASEVLLCVFGSATGARLALER-PEVLPMMQTGLQHELAALRRLTIGVIHAAMAD---------------EPRGRAARCRVLLATPLPPLLVRAVADPSIAVAQAATDCLVDMLRFSQSTDAEALTQPPPHPPQSAGDAGXASASAAGPSPMVVDDTGAGGSAVVASSPVVAAAVASVACDAVLTAVAEAAATATDSTVTLRLAELAARCAALSDSVFEAARQRGALAPLLATAHESDDVMLRLNALELLELLADTPAGSAFLFGQGHVAALLRLAG 1147
            L L + ++++ T      E  +   LL D    LLF A + ++  A DE + +     LL VFGS  G  +  +   E++     GL H  A +R LT   + A                   E R RA RCR LL  PL P LV A+ D     +Q   D LV +    +  D  A   P      + G A     +  G     + +  AG +A  A++P                               LR A++A R  + SDS F AA   GAL+ +     ++ DV+L+LNAL+LL+ +A T  G+  L   GH+  LL  AG
Sbjct:   38 LALLSSRSRETTADGGATERKLALGLLKDVEPRLLFLAVDFSYGQAGDEVKRRAVETALLSVFGSTVGPEIYQQNGTELVAFFLAGLCHPAAGVRTLTATAMGALXXXXXXXXXXXXXXXXXXEGRERAERCRTLLQPPLLPALVAALGDGDTGASQQVADTLVALC---EEADGRAAVTP-----TTGGRATGCRRAVMGALASQIGEVVAGLTARQAATP------------------------------KLRFADIATRLMSASDSAFAAAVDAGALSLVTDLTEDASDVLLQLNALDLLDQVASTAGGALHLVANGHLDRLLVSAG 329
[Close]
BLAST of mRNA_P-wetherbeei_contig11959.2.1 vs. uniprot
Match: A0A6H5KYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.590e-6
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:  917 LRLAELAARCAALSDSVFEAARQRGALAPLLATAHESDDVMLRLNALELLELLADTPAGSAFLFGQGHVAALLRLAG 1147
            LR A++A R  + SDS F AA   GALA +     ++ DV+L+LNAL+LL+ +A T  G+  L   GH+  LL  AG
Sbjct:  170 LRFADIATRLMSASDSAFAAAVDSGALALVTDLTEDASDVLLQLNALDLLDRVASTAGGARHLVANGHLDKLLVAAG 246
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11959.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE3_ECTSI2.440e-1328.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYX7_9PHAE9.590e-644.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11959contigP-wetherbeei_contig11959:792..2001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1212
Hectar predicted targeting categorysignal peptide
Exons1
Cds size939
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.8689208-UTR-P-wetherbeei_contig11959:791..10621683185932.8689208-UTR-P-wetherbeei_contig11959:791..1062Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11959 792..1062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.8766828-CDS-P-wetherbeei_contig11959:1062..20011683185932.8766828-CDS-P-wetherbeei_contig11959:1062..2001Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11959 1063..2001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11959.2.1prot_P-wetherbeei_contig11959.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11959 1063..2001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11959.2.1

>prot_P-wetherbeei_contig11959.2.1 ID=prot_P-wetherbeei_contig11959.2.1|Name=mRNA_P-wetherbeei_contig11959.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=313bp
MVANLLADTPLSLLFAATNLAFAAFDEGRTKVASEVLLCVFGSATGARLA
LERPEVLPMMQTGLQHELAALRRLTIGVIHAAMADEPRGRAARCRVLLAT
PLPPLLVRAVADPSIAVAQAATDCLVDMLRFSQSTDAEALTQPPPHPPQS
AGDAGDASASAAGPSPMVVDDTGAGGSAVVASSPVVAAAVASVACDAVLT
AVAEAAATATDSTVTLRLAELAARCAALSDSVFEAARQRGALAPLLATAH
ESDDVMLRLNALELLELLADTPAGSAFLFGQGHVAALLRLAGGDDGRGGG
NGGGGGCVFFGGG
back to top

mRNA from alignment at P-wetherbeei_contig11959:792..2001+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11959.2.1 ID=mRNA_P-wetherbeei_contig11959.2.1|Name=mRNA_P-wetherbeei_contig11959.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1210bp|location=Sequence derived from alignment at P-wetherbeei_contig11959:792..2001+ (Phaeothamnion wetherbeei SAG_119_79)
GGCTGCACCTTCAAATAGTCTGCGGTGTTTGCATACTGCATCTCTACAGC
TTTGCGTCCGAGGCTTTTCTTTTTCACTTTTTCGCTTTTATATGGTGGTT
AACACTCATTTTGTGCGACATGTCACGTCTCTGCCTTTCTAATACTCATC
GTTCGTCGAAATATCTCGTGCAACTTCGTCTCTGCGTTTCTTGTAAACCT
TTCAATCGCTGGGACTTAATAACAAGCAGAATAAGCAGGCAACGCAGAGC
ACGCGCGACAAGGAAGATGCAATGGTAGCCAACTTGCTGGCTGACACGCC
CCTGTCGCTGCTCTTCGCCGCCACCAACCTTGCCTTTGCTGCCTTCGACG
AGGGACGCACCAAGGTAGCCAGCGAGGTCCTCCTCTGTGTCTTTGGCTCC
GCCACCGGCGCCCGCCTCGCCCTGGAGCGGCCGGAGGTCCTGCCGATGAT
GCAGACCGGGCTGCAGCACGAGCTGGCGGCGCTGCGGCGCCTCACTATCG
GCGTCATCCACGCTGCGATGGCCGATGAGCCGCGCGGCCGCGCCGCGCGC
TGCCGAGTGCTGCTGGCCACGCCGCTGCCGCCGCTGCTCGTGCGCGCTGT
GGCCGACCCAAGCATCGCGGTGGCACAGGCTGCCACGGACTGTCTCGTCG
ACATGCTGCGATTCTCCCAATCCACCGACGCGGAAGCGCTCACGCAGCCG
CCGCCTCATCCGCCACAGTCCGCCGGCGACGCTGGTGATGCCTCCGCCTC
GGCGGCTGGGCCATCACCCATGGTGGTAGACGACACTGGAGCCGGGGGCT
CAGCCGTGGTGGCATCTTCCCCCGTCGTGGCTGCCGCGGTCGCGTCCGTC
GCTTGCGACGCGGTCCTGACCGCAGTGGCGGAGGCCGCCGCGACGGCGAC
GGACTCGACTGTGACGCTCCGCCTGGCGGAGCTGGCAGCACGCTGCGCAG
CCCTCAGCGATTCCGTGTTCGAGGCGGCGCGGCAGCGGGGCGCGCTGGCG
CCGCTCCTGGCGACGGCGCACGAGAGCGACGACGTCATGCTGCGCCTCAA
CGCGCTGGAGCTCCTCGAGCTGCTGGCTGACACGCCGGCCGGCAGCGCCT
TCCTCTTCGGCCAGGGGCACGTCGCCGCCCTGCTGCGCCTGGCCGGCGGC
GACGACGGGCGCGGCGGCGGGAACGGCGGTGGCGGCGGCTGTGTTTTTTT
TGGGGGGGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11959:792..2001+

>mRNA_P-wetherbeei_contig11959.2.1 ID=mRNA_P-wetherbeei_contig11959.2.1|Name=mRNA_P-wetherbeei_contig11959.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig11959:792..2001+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAGCCAACTTGCTGGCTGACACGCCCCTGTCGCTGCTCTTCGCCGC
CACCAACCTTGCCTTTGCTGCCTTCGACGAGGGACGCACCAAGGTAGCCA
GCGAGGTCCTCCTCTGTGTCTTTGGCTCCGCCACCGGCGCCCGCCTCGCC
CTGGAGCGGCCGGAGGTCCTGCCGATGATGCAGACCGGGCTGCAGCACGA
GCTGGCGGCGCTGCGGCGCCTCACTATCGGCGTCATCCACGCTGCGATGG
CCGATGAGCCGCGCGGCCGCGCCGCGCGCTGCCGAGTGCTGCTGGCCACG
CCGCTGCCGCCGCTGCTCGTGCGCGCTGTGGCCGACCCAAGCATCGCGGT
GGCACAGGCTGCCACGGACTGTCTCGTCGACATGCTGCGATTCTCCCAAT
CCACCGACGCGGAAGCGCTCACGCAGCCGCCGCCTCATCCGCCACAGTCC
GCCGGCGACGCTGGTGATGCCTCCGCCTCGGCGGCTGGGCCATCACCCAT
GGTGGTAGACGACACTGGAGCCGGGGGCTCAGCCGTGGTGGCATCTTCCC
CCGTCGTGGCTGCCGCGGTCGCGTCCGTCGCTTGCGACGCGGTCCTGACC
GCAGTGGCGGAGGCCGCCGCGACGGCGACGGACTCGACTGTGACGCTCCG
CCTGGCGGAGCTGGCAGCACGCTGCGCAGCCCTCAGCGATTCCGTGTTCG
AGGCGGCGCGGCAGCGGGGCGCGCTGGCGCCGCTCCTGGCGACGGCGCAC
GAGAGCGACGACGTCATGCTGCGCCTCAACGCGCTGGAGCTCCTCGAGCT
GCTGGCTGACACGCCGGCCGGCAGCGCCTTCCTCTTCGGCCAGGGGCACG
TCGCCGCCCTGCTGCGCCTGGCCGGCGGCGACGACGGGCGCGGCGGCGGG
AACGGCGGTGGCGGCGGCTGTGTTTTTTTTGGGGGGGGG
back to top