mRNA_P-wetherbeei_contig11946.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11946.2.1
Unique NamemRNA_P-wetherbeei_contig11946.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A2W2BZP4_9HYPH (RNA polymerase sigma factor RpoH n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2W2BZP4_9HYPH)

HSP 1 Score: 460 bits (1184), Expect = 1.760e-161
Identity = 236/298 (79.19%), Postives = 271/298 (90.94%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEGEWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQKALAPKAAPA 894
            MA++TSLPAIASGE GL RYLQEIR FPML P+EE+MLAKRWKEH DS+AAE++ITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVK+FEPDKGFRLATYAMWWIKASIQE+VLRSWSLVK+GTTA+QKKLFFNLRK+K QI+A+ +GDL+PDQV+LIA +LGV E++V++MNRRLGGD SLNA +  D EGEWQDWLVD+SD+QE++L  +EE +MR  +L  AM+KLTDRERRVFEAR+LQDDP TLEDLS+EF VSRERIRQIEVRAFEKVQKAVKNA+Q+ L PK  PA
Sbjct:    1 MAKTTSLPAIASGEAGLQRYLQEIRNFPMLQPDEEYMLAKRWKEHGDSRAAEKLITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFEPDKGFRLATYAMWWIKASIQEFVLRSWSLVKMGTTANQKKLFFNLRKVKSQIEAMQDGDLRPDQVELIAKKLGVTEEDVVSMNRRLGGDTSLNATIREDGEGEWQDWLVDESDNQEEMLVQSEEQSMRHGLLQDAMEKLTDRERRVFEARRLQDDPATLEDLSQEFGVSRERIRQIEVRAFEKVQKAVKNASQRLLGPKTLPA 298          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A6G6WNN4_9HYPH (RNA polymerase sigma factor RpoH n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6WNN4_9HYPH)

HSP 1 Score: 452 bits (1163), Expect = 3.090e-158
Identity = 232/292 (79.45%), Postives = 272/292 (93.15%), Query Frame = 1
Query:   13 TSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEGEWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQKALAPKAA 888
            ++LP+++S EGGL+RYLQEIR FPML P+EEFMLAKRWKEH D +AA +++TSHLRLVAKIAMGYRGYGLPI EV+SEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQE++LRSWSLVK+GTTASQKKLFFNLRK+KGQIQALDEGDL+PDQVK IA RLGV E++V++MNRRL GDASLNA V A++EGEWQDWLVDD+D+QED+L ++EE  +R ++L++A++KLTDRERRVFEAR++ ++P TLEDLS+EF VSRERIRQIEVRAFEKVQKAVKNAAQKALAPKAA
Sbjct:    7 SALPSVSS-EGGLSRYLQEIRQFPMLQPDEEFMLAKRWKEHGDREAAHKLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEFILRSWSLVKMGTTASQKKLFFNLRKVKGQIQALDEGDLRPDQVKEIARRLGVPEEDVVSMNRRLSGDASLNAPVRAESEGEWQDWLVDDTDTQEDVLVESEEKRLRLDLLSEALEKLTDRERRVFEARRMAEEPATLEDLSQEFGVSRERIRQIEVRAFEKVQKAVKNAAQKALAPKAA 297          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A847ZTI7_9HYPH (RNA polymerase sigma factor RpoH n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZTI7_9HYPH)

HSP 1 Score: 448 bits (1152), Expect = 1.460e-156
Identity = 236/296 (79.73%), Postives = 266/296 (89.86%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEG--EWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQKALAPK 882
            MA+S SLP IASGE  L+RYLQEIR FPMLAPEEE+MLAKR+KEH D  AA RMITSHLRLVAKIAMGYRGYGLPIGEVISEGN+GLMQAVK+FEPDKGF+LATYAMWWIKASIQE++LRSWSLVK+GTTA+QKKLFFNLRK+KGQIQAL+EGDLKP+QVK IA RLGV E+EVI+MNRRL GD+SLNA + +D +G  EWQDWLVDD+DSQE +L  NEE+ MR   L +A+ KLT+RERRV EARKLQDDP TL+DLS+EF VSRERIRQIEVRAFEK+QKAVKNAAQKALAP+
Sbjct:    1 MAKSASLPMIASGEASLSRYLQEIRQFPMLAPEEEYMLAKRYKEHGDRDAAHRMITSHLRLVAKIAMGYRGYGLPIGEVISEGNIGLMQAVKKFEPDKGFKLATYAMWWIKASIQEFILRSWSLVKMGTTANQKKLFFNLRKIKGQIQALEEGDLKPEQVKYIAHRLGVHEEEVISMNRRLSGDSSLNAPLRSDGDGDGEWQDWLVDDNDSQETVLVRNEESEMRNSYLKEALSKLTERERRVIEARKLQDDPATLDDLSQEFGVSRERIRQIEVRAFEKLQKAVKNAAQKALAPR 296          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A7W9CVW0_9HYPH (RNA polymerase sigma factor RpoH n=1 Tax=Prosthecomicrobium pneumaticum TaxID=81895 RepID=A0A7W9CVW0_9HYPH)

HSP 1 Score: 432 bits (1111), Expect = 2.440e-150
Identity = 225/289 (77.85%), Postives = 258/289 (89.27%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAE-GEWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQ 864
            MA  TSLPAIASGE GL RYL EIR FPMLAP+EE+MLAK ++EH D  AA R++TSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEP+KGFRLATYAMWWIKA+IQEY+LRSWSLVK+GTTA+QK+LFFNLRKMKGQIQAL+EGDL+PDQV+ IAT+LGV E++V++MNRRLGGDASLNA + AD+E GEWQDWLVDDSD+QE +LAD EEA  R+ +L  AM  L DRERR+FEAR+L DDP+TLE+LS EF VSRER+RQIEVRAFEKVQKAV+  A+
Sbjct:    1 MAARTSLPAIASGEAGLARYLDEIRKFPMLAPDEEYMLAKAYREHGDRDAAHRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPEKGFRLATYAMWWIKAAIQEYILRSWSLVKMGTTANQKRLFFNLRKMKGQIQALEEGDLRPDQVQEIATKLGVTEEDVVSMNRRLGGDASLNAPLRADSESGEWQDWLVDDSDNQETVLADQEEAENRRRLLRDAMGVLNDRERRIFEARRLVDDPVTLEELSTEFGVSRERVRQIEVRAFEKVQKAVRRGAR 289          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A1M7ILJ7_9HYPH (RNA polymerase sigma factor RpoH n=5 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1M7ILJ7_9HYPH)

HSP 1 Score: 431 bits (1107), Expect = 7.200e-150
Identity = 223/289 (77.16%), Postives = 264/289 (91.35%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAE-GEWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQ 864
            MAR+  +P + +GEGGL+RYL EIR FPML P+EE+MLAKR+KEH D +AAER++ SHLRLVAKIAMGYRGYGLP+GEV+SEGNVGLMQAVKRFEPDKGFRLATYAMWWIKA+IQEY+LRSWSLVK+GTTA+QK+LFFNLR++KG+IQALDEGDLKPDQV+ IAT+LGV+E+EVI+MNRRLGGDASLNA V A+A+ GEWQDWLVDDSDSQE ILA+ EE  +R+ ML+ AMD L DRERR+FEAR+L +DP+TLEDLS EF VSRER+RQIEVRAFEKVQKAV+++A+
Sbjct:    1 MARN--VPMLTAGEGGLSRYLDEIRKFPMLQPQEEYMLAKRYKEHDDPEAAERLVNSHLRLVAKIAMGYRGYGLPLGEVVSEGNVGLMQAVKRFEPDKGFRLATYAMWWIKAAIQEYILRSWSLVKMGTTANQKRLFFNLRRLKGKIQALDEGDLKPDQVQEIATKLGVSEEEVISMNRRLGGDASLNAPVRAEADSGEWQDWLVDDSDSQETILANQEELDVRRRMLSDAMDVLNDRERRIFEARRLSEDPITLEDLSDEFGVSRERVRQIEVRAFEKVQKAVQSSAK 287          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: UPI0018C54CC6 (RNA polymerase sigma factor RpoH n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=UPI0018C54CC6)

HSP 1 Score: 427 bits (1098), Expect = 2.770e-148
Identity = 227/300 (75.67%), Postives = 261/300 (87.00%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEG--EWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQK---ALAPKA 885
            MA+S ++P ++ GEG LNRYLQ+IR FPML PEEE+ML K WKEH D KAAERMITSHLRLVAKIAMGYRGYGLPIG+VISEGN+GLM AVKRFEPDKGFRLATYAMWWIKA IQE+VLRSWSLVKIGTT+SQKKLFFNLRKMK +IQAL+EGDL+P+ VK IA  LGV E++V++MNRRL GDASLNA + +DAEG  EWQDWLVDD+D+ E ++A+NEEA  R  ML +A+ KL+DRERRV EARKLQD+P TLEDLS+EF+VSRERIRQIEV+AFEK+QKAVK AA K   ALA KA
Sbjct:    1 MAKSLNMPILSGGEGSLNRYLQDIRKFPMLTPEEEYMLGKAWKEHEDPKAAERMITSHLRLVAKIAMGYRGYGLPIGDVISEGNIGLMHAVKRFEPDKGFRLATYAMWWIKAQIQEFVLRSWSLVKIGTTSSQKKLFFNLRKMKSKIQALEEGDLRPEHVKYIAKNLGVDEKDVVSMNRRLQGDASLNAPLRSDAEGDVEWQDWLVDDADTPEQMVAENEEAGQRNSMLTEALTKLSDRERRVIEARKLQDEPATLEDLSQEFNVSRERIRQIEVKAFEKLQKAVKAAATKVAPALAGKA 300          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A1M5MES0_9HYPH (RNA polymerase sigma factor RpoH n=4 Tax=Kaistia TaxID=166953 RepID=A0A1M5MES0_9HYPH)

HSP 1 Score: 427 bits (1097), Expect = 3.670e-148
Identity = 224/289 (77.51%), Postives = 254/289 (87.89%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEG-EWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQ 864
            MA   SLP IASGE GL+RYL EIR FPMLAP+EE+MLAK +KEH D  AA R++TSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEP+KGFRLATYAMWWIKASIQEY+LRSWSLVK+GTTA+QK+LFFNLRKMK QIQALDEGDLKPDQV+ IAT+LGV  ++VI+MNRRLGGD SLNA + ADAEG EWQDWLVDDS+SQE +LA+ EEA  R+ +L  AM  L DRERR+FEAR+L ++P+TLE+LS EF VSRER+RQIEVRAFEKVQKAVK  A+
Sbjct:    1 MAARASLPVIASGEAGLSRYLDEIRRFPMLAPDEEYMLAKAYKEHDDRNAAHRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRKMKSQIQALDEGDLKPDQVQQIATKLGVTNEDVISMNRRLGGDTSLNAPLRADAEGGEWQDWLVDDSESQETVLANQEEADNRRRLLKDAMGVLNDRERRIFEARRLAEEPITLEELSTEFGVSRERVRQIEVRAFEKVQKAVKRGAR 289          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: A0A839ADM6_9HYPH (RNA polymerase sigma factor RpoH n=1 Tax=Stappia albiluteola TaxID=2758565 RepID=A0A839ADM6_9HYPH)

HSP 1 Score: 426 bits (1094), Expect = 7.620e-148
Identity = 215/284 (75.70%), Postives = 260/284 (91.55%), Query Frame = 1
Query:   16 SLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAE-GEWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQ 864
            ++P + +GEGGL+RYL EIR FPML P+EE+MLAKR+KEH D +AAE+++TSHLRLVAKIAMGYRGYGLPI EV+SEGNVGLMQAVKRFEPDKGFRLATYAMWWIKA+IQEY+LRSWSLVK+GTTASQK+LFFNLR++KG+IQALD+GDLKPDQV+ IAT+LGV+E++V++MNRRL GDASLNA + A+A+ GEWQDWLVD+SDSQE ILAD EE   R++ML++AMD L +RERR+FEAR+L +DP+TLEDLS EF VSRER+RQIEVRAFEKVQKAV+ +A+
Sbjct:    4 NIPVLTAGEGGLSRYLDEIRRFPMLEPQEEYMLAKRYKEHDDPEAAEKLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPDKGFRLATYAMWWIKAAIQEYILRSWSLVKMGTTASQKRLFFNLRRLKGRIQALDDGDLKPDQVQEIATKLGVSEEDVVSMNRRLAGDASLNAPIRAEADSGEWQDWLVDESDSQESILADQEELDQRRKMLSEAMDVLNERERRIFEARRLAEDPVTLEDLSTEFGVSRERVRQIEVRAFEKVQKAVRKSAR 287          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: UPI0010C94202 (RNA polymerase sigma factor RpoH n=1 Tax=Rhodoligotrophos defluvii TaxID=2561934 RepID=UPI0010C94202)

HSP 1 Score: 426 bits (1094), Expect = 8.180e-148
Identity = 220/286 (76.92%), Postives = 258/286 (90.21%), Query Frame = 1
Query:   19 LPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEGEWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQKALA 876
            +P I S +GGL+RYLQEIR FPML PE+EFMLAKRW+E  DS+AA +++TSHLRLVAKIAMGYRGYGLP+ E++SEGNVGLMQAVKRF+PDKGFRLATYAMWWI+ASIQE++LRSWSLVK+GTTASQKKLFFNLRK+KGQIQAL+EGDL PDQV  IATRLGV E++VI+MNRRL GDASLNA + A++EGEWQDWLVD+  +QE  LAD EE T+R+ +LA+AMDKL +RERR+FEAR+L D+P+TLEDLS+EF VSRERIRQIEVRAFEKVQKAV+N AQ ALA
Sbjct:    6 VPTITS-DGGLSRYLQEIRKFPMLKPEQEFMLAKRWRETGDSEAAHKLVTSHLRLVAKIAMGYRGYGLPVSEIVSEGNVGLMQAVKRFDPDKGFRLATYAMWWIRASIQEFILRSWSLVKMGTTASQKKLFFNLRKVKGQIQALEEGDLNPDQVSEIATRLGVPEEDVISMNRRLSGDASLNAPLRAESEGEWQDWLVDEEANQETKLADLEEMTVRQGLLARAMDKLNERERRIFEARRLSDEPLTLEDLSREFGVSRERIRQIEVRAFEKVQKAVRNEAQAALA 290          
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Match: UPI000378EA7A (RNA polymerase sigma factor RpoH n=1 Tax=Kaistia granuli TaxID=363259 RepID=UPI000378EA7A)

HSP 1 Score: 425 bits (1093), Expect = 1.440e-147
Identity = 224/289 (77.51%), Postives = 254/289 (87.89%), Query Frame = 1
Query:    1 MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKAAERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGFRLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQALDEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEG-EWQDWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDDPMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQ 864
            MA   SLP IASGE GL+RYL +IR FPMLAP+EE+MLAK +KEH D  AA R++TSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEP+KGFRLATYAMWWIKASIQEY+LRSWSLVK+GTTA+QK+LFFNLRKMK QIQAL+EGDLKP QV+ IAT+LGV   +VI+MNRRLGGDASLNA + ADAEG EWQDWLVDDSD+QE ILA+ EEA  R+++L  AM  L +RERR+FEAR+L DDPMTLE+LS EF VSRER+RQIEVRAFEKVQKAV+  A+
Sbjct:    1 MAARASLPVIASGEAGLSRYLDDIRRFPMLAPDEEYMLAKAYKEHDDRSAAHRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPEKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRKMKSQIQALEEGDLKPHQVEQIATKLGVTTDDVISMNRRLGGDASLNAPLRADAEGGEWQDWLVDDSDNQETILANQEEADNRRKLLRDAMGVLNERERRIFEARRLSDDPMTLEELSAEFGVSRERVRQIEVRAFEKVQKAVRRGAR 289          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11946.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W2BZP4_9HYPH1.760e-16179.19RNA polymerase sigma factor RpoH n=2 Tax=Hyphomicr... [more]
A0A6G6WNN4_9HYPH3.090e-15879.45RNA polymerase sigma factor RpoH n=4 Tax=Alphaprot... [more]
A0A847ZTI7_9HYPH1.460e-15679.73RNA polymerase sigma factor RpoH n=1 Tax=Phyllobac... [more]
A0A7W9CVW0_9HYPH2.440e-15077.85RNA polymerase sigma factor RpoH n=1 Tax=Prostheco... [more]
A0A1M7ILJ7_9HYPH7.200e-15077.16RNA polymerase sigma factor RpoH n=5 Tax=Alphaprot... [more]
UPI0018C54CC62.770e-14875.67RNA polymerase sigma factor RpoH n=1 Tax=Aestuarii... [more]
A0A1M5MES0_9HYPH3.670e-14877.51RNA polymerase sigma factor RpoH n=4 Tax=Kaistia T... [more]
A0A839ADM6_9HYPH7.620e-14875.70RNA polymerase sigma factor RpoH n=1 Tax=Stappia a... [more]
UPI0010C942028.180e-14876.92RNA polymerase sigma factor RpoH n=1 Tax=Rhodoligo... [more]
UPI000378EA7A1.440e-14777.51RNA polymerase sigma factor RpoH n=1 Tax=Kaistia g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11946contigP-wetherbeei_contig11946:527..1438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog384765.SIAM614_23547
Preferred namerpoH
PFAMsSigma70_r1_2,Sigma70_r2,Sigma70_r4
Model size912
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03089
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.8e-150
EggNOG OGsCOG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,2TR9Q@28211|Alphaproteobacteria
DescriptionRNA polymerase sigma
Cds size912
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.470182-CDS-P-wetherbeei_contig11946:526..14381683185932.470182-CDS-P-wetherbeei_contig11946:526..1438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11946 527..1438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11946.2.1prot_P-wetherbeei_contig11946.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11946 527..1438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11946.2.1

>prot_P-wetherbeei_contig11946.2.1 ID=prot_P-wetherbeei_contig11946.2.1|Name=mRNA_P-wetherbeei_contig11946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=304bp
MARSTSLPAIASGEGGLNRYLQEIRLFPMLAPEEEFMLAKRWKEHADSKA
AERMITSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPDKGF
RLATYAMWWIKASIQEYVLRSWSLVKIGTTASQKKLFFNLRKMKGQIQAL
DEGDLKPDQVKLIATRLGVAEQEVINMNRRLGGDASLNAHVSADAEGEWQ
DWLVDDSDSQEDILADNEEATMRKEMLAKAMDKLTDRERRVFEARKLQDD
PMTLEDLSKEFDVSRERIRQIEVRAFEKVQKAVKNAAQKALAPKAAPAAA
LAY*
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mRNA from alignment at P-wetherbeei_contig11946:527..1438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11946.2.1 ID=mRNA_P-wetherbeei_contig11946.2.1|Name=mRNA_P-wetherbeei_contig11946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig11946:527..1438- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCTCCACATCATTACCGGCAATTGCCTCAGGCGAAGGCGGTCT CAACCGCTATCTGCAGGAAATTCGCCTGTTTCCGATGCTCGCCCCGGAAG AAGAATTCATGCTGGCCAAGCGCTGGAAAGAACATGCTGACAGCAAAGCC GCTGAACGCATGATCACCAGCCATTTGCGCCTCGTGGCCAAGATTGCCAT GGGCTACCGCGGCTATGGCCTGCCCATCGGCGAAGTAATCTCCGAAGGCA ACGTGGGCCTCATGCAGGCCGTCAAGCGCTTCGAGCCCGACAAAGGCTTC CGGCTGGCAACCTATGCCATGTGGTGGATCAAGGCCTCCATCCAGGAATA TGTGCTGCGCTCGTGGTCGCTGGTGAAGATCGGGACCACCGCCAGCCAGA AGAAGCTGTTCTTCAACCTGCGCAAGATGAAGGGCCAGATTCAGGCCCTT GACGAAGGCGATCTGAAGCCGGACCAGGTGAAGCTGATTGCCACGCGGCT TGGCGTTGCCGAGCAGGAAGTCATCAACATGAACCGCAGGCTTGGCGGCG ATGCTTCGCTCAATGCCCATGTGAGCGCTGATGCCGAAGGCGAATGGCAG GATTGGCTGGTCGATGACAGCGACAGCCAGGAAGACATTCTGGCTGACAA TGAAGAAGCCACTATGCGCAAGGAAATGCTGGCCAAGGCCATGGACAAGC TCACTGACCGCGAGCGCCGCGTGTTCGAAGCCCGCAAGCTGCAGGATGAC CCGATGACCCTCGAAGACCTCTCGAAGGAATTCGACGTCTCGCGCGAGCG TATCCGGCAGATTGAAGTGCGGGCTTTCGAAAAGGTCCAGAAGGCCGTGA AAAACGCGGCCCAAAAGGCCCTTGCCCCGAAAGCCGCTCCGGCGGCAGCA CTTGCCTACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11946:527..1438-

>mRNA_P-wetherbeei_contig11946.2.1 ID=mRNA_P-wetherbeei_contig11946.2.1|Name=mRNA_P-wetherbeei_contig11946.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=912bp|location=Sequence derived from alignment at P-wetherbeei_contig11946:527..1438- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCTCCACATCATTACCGGCAATTGCCTCAGGCGAAGGCGGTCT
CAACCGCTATCTGCAGGAAATTCGCCTGTTTCCGATGCTCGCCCCGGAAG
AAGAATTCATGCTGGCCAAGCGCTGGAAAGAACATGCTGACAGCAAAGCC
GCTGAACGCATGATCACCAGCCATTTGCGCCTCGTGGCCAAGATTGCCAT
GGGCTACCGCGGCTATGGCCTGCCCATCGGCGAAGTAATCTCCGAAGGCA
ACGTGGGCCTCATGCAGGCCGTCAAGCGCTTCGAGCCCGACAAAGGCTTC
CGGCTGGCAACCTATGCCATGTGGTGGATCAAGGCCTCCATCCAGGAATA
TGTGCTGCGCTCGTGGTCGCTGGTGAAGATCGGGACCACCGCCAGCCAGA
AGAAGCTGTTCTTCAACCTGCGCAAGATGAAGGGCCAGATTCAGGCCCTT
GACGAAGGCGATCTGAAGCCGGACCAGGTGAAGCTGATTGCCACGCGGCT
TGGCGTTGCCGAGCAGGAAGTCATCAACATGAACCGCAGGCTTGGCGGCG
ATGCTTCGCTCAATGCCCATGTGAGCGCTGATGCCGAAGGCGAATGGCAG
GATTGGCTGGTCGATGACAGCGACAGCCAGGAAGACATTCTGGCTGACAA
TGAAGAAGCCACTATGCGCAAGGAAATGCTGGCCAAGGCCATGGACAAGC
TCACTGACCGCGAGCGCCGCGTGTTCGAAGCCCGCAAGCTGCAGGATGAC
CCGATGACCCTCGAAGACCTCTCGAAGGAATTCGACGTCTCGCGCGAGCG
TATCCGGCAGATTGAAGTGCGGGCTTTCGAAAAGGTCCAGAAGGCCGTGA
AAAACGCGGCCCAAAAGGCCCTTGCCCCGAAAGCCGCTCCGGCGGCAGCA
CTTGCCTACTGA
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