mRNA_P-wetherbeei_contig11944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11944.1.1
Unique NamemRNA_P-wetherbeei_contig11944.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11944.1.1 vs. uniprot
Match: A0A2G4HIF5_9BACT (Uncharacterized protein n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A2G4HIF5_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 6.760e-7
Identity = 52/189 (27.51%), Postives = 85/189 (44.97%), Query Frame = 1 
Query: 1150 VAMRAEALSVDKAQLEVSGPESPKLVRLDGLRPFHFTLSDG-LKFSNPEGDLATLATRGVDLAWLNPVLKDMTLSGYLASADFKVVAPSAGALSLSAVGPLSIEGFGLRRDGRQLLRGLAFKVAPDLQYSTSDSRASFKNLSIRSGAGSLVSGDLDVAIHTEVDQAPHIATKGRLSLDVVRLAGQPVVA 1713
            +A R ++  +D+ + E+SG     +  +  L+ F F    G LK ++P  +L  +   G+ LAW  P L  +TL+G     +F   A + G ++L    PLSI G  L + G  LL  +   +     Y+ +  +A   +L+++S    L +        T  DQ   I T G  S  +  L  QP  A
Sbjct:  380 LAQRGDSTRIDRLKAELSGARP--VAAIQSLQAFEFNAKTGELKVADPARELVAITLHGLPLAWAQPFLPGLTLTGSDLRGEFAATANNGG-MALRPRVPLSISGLTLAQAGEPLLEAVDLALNVSADYAPAGWQAEVTSLTVQSAGTKLFALKAKAGQLTGKDQP--IKTAGEWSSSLPALLAQPAAA 563
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G4HIF5_9BACT6.760e-727.51Uncharacterized protein n=1 Tax=Opitutae bacterium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11944contigP-wetherbeei_contig11944:3..2057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog452637.Oter_3800
Model size2010
Max annot lvl414999|Opitutae
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.91e-07
EggNOG OGsCOG2982@1|root,COG2982@2|Bacteria,46XET@74201|Verrucomicrobia,3K73B@414999|Opitutae
DescriptionProtein involved in outer membrane biogenesis
Cds size2010
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.4043424-CDS-P-wetherbeei_contig11944:2..11691683185932.4043424-CDS-P-wetherbeei_contig11944:2..1169Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11944 3..1169 -
1683185932.4129193-CDS-P-wetherbeei_contig11944:1214..20571683185932.4129193-CDS-P-wetherbeei_contig11944:1214..2057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11944 1215..2057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11944.1.1prot_P-wetherbeei_contig11944.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11944 3..2057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11944.1.1

>prot_P-wetherbeei_contig11944.1.1 ID=prot_P-wetherbeei_contig11944.1.1|Name=mRNA_P-wetherbeei_contig11944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=670bp
GKLAITEVNRGRVRLLDAKFDSELPLQPARDAQHLEVMLEVEPPSEYLEE
RKEARVVSAPDGSAHTLPDPEALSLRVRLGDEAPARFEISGRYRGEDGVF
RGHYRLADIGPLLNTLSGGAPLPSLVTDTQGQVELDSFHLRGKLALKSRT
RVSDLQHVLGDTAALPQHLDMALSTQGNFDTEQFTLAALKLDLIDTNTIN
RFALVMGAPLSVPFATPQSVLDTPRELARLVVGPLPLAWLQGLAEGQVLN
GELLGPYALLIDEQKRVRLEALAPTSINGVRAAAVTETVMIENLSLLASP
SASWSTDFLRYALNDVHILIGEARLAEFSVKAASKQSEDALRTWRYRTEA
ALHYDALALVPSAAERIQDYPLPSGTSAAFKGIVAMRAEALSVDKAQLEV
SGPESPKLVRLDGLRPFHFTLSDGLKFSNPEGDLATLATRGVDLAWLNPV
LKDMTLSGYLASADFKVVAPSAGALSLSAVGPLSIEGFGLRRDGRQLLRG
LAFKVAPDLQYSTSDSRASFKNLSIRSGAGSLVSGDLDVAIHTEVDQAPH
IATKGRLSLDVVRLAGQPVVATALQEPLPELALEAALEFDLELQAETIKV
NRSHAELKVGDRARLTLDTTPGLALKTQLAAGEDLAQHFIGAASLDIKDL
SSETLNRFVPLGPLSFAEIN
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mRNA from alignment at P-wetherbeei_contig11944:3..2057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11944.1.1 ID=mRNA_P-wetherbeei_contig11944.1.1|Name=mRNA_P-wetherbeei_contig11944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2055bp|location=Sequence derived from alignment at P-wetherbeei_contig11944:3..2057- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCTCGCCATAACGGAGGTGAATCGCGGTCGCGTGCGCCTGCTCGA
CGCCAAGTTCGATAGTGAGTTGCCGCTGCAGCCGGCGCGCGACGCCCAGC
ACCTGGAAGTCATGCTCGAAGTTGAACCGCCGTCGGAGTATCTCGAAGAG
CGTAAAGAAGCGCGCGTGGTGTCGGCGCCCGATGGCAGCGCTCACACCCT
GCCCGATCCCGAGGCCCTGTCCTTGCGCGTGCGCCTTGGCGATGAAGCAC
CGGCGCGGTTTGAGATCTCCGGGCGCTATCGCGGTGAAGACGGCGTGTTC
CGTGGCCACTATCGGCTGGCCGATATTGGTCCGCTGCTGAACACCTTGAG
TGGCGGCGCGCCGCTGCCGAGCCTGGTCACCGACACTCAAGGTCAGGTGG
AGCTCGACAGCTTTCATCTGCGCGGCAAGCTGGCGCTTAAGTCGCGCACC
CGCGTCAGTGACCTCCAGCATGTGCTGGGCGACACCGCTGCGCTGCCCCA
GCACCTCGATATGGCCCTCAGCACCCAGGGCAACTTCGACACCGAGCAGT
TTACGCTCGCCGCGCTCAAGCTTGACCTCATCGATACCAATACCATCAAC
CGCTTCGCGCTGGTGATGGGCGCTCCACTCAGTGTGCCGTTTGCGACACC
GCAGAGCGTGCTCGACACGCCGCGCGAACTTGCGCGCCTGGTGGTCGGGC
CCTTACCGCTGGCATGGCTGCAGGGTCTCGCCGAGGGCCAGGTCTTGAAC
GGCGAATTGCTCGGCCCCTATGCGCTCCTCATCGATGAGCAGAAACGTGT
CCGACTCGAAGCACTCGCGCCCACCAGCATTAACGGCGTGCGCGTCGCCA
CCATCAGCAAGCCGGCCACCGACAGCGACGACGCGCAGGCTGCCGCCGTC
ACTGAGACCGTGATGATCGAGAACCTGAGCCTGCTGGCGAGCCCGTCAGC
GAGCTGGTCGACGGATTTTCTCCGCTACGCACTGAATGACGTGCACATCC
TGATCGGCGAGGCCAGGCTCGCCGAATTCAGCGTCAAGGCCGCCAGCAAA
CAAAGCGAGGATGCGCTGCGCACCTGGCGTTATCGCACCGAGGCTGCGCT
GCACTACGACGCACTCGCATTGGTGCCATCCGCCGCGGAACGCATCCAGG
ATTATCCCTTACCCAGTGGCACCAGTGCTGCATTCAAGGGCATCGTGGCG
ATGCGCGCTGAGGCCTTGTCGGTGGACAAGGCCCAGCTCGAAGTCAGCGG
TCCCGAAAGTCCCAAGCTCGTGCGGCTCGACGGTCTGCGACCCTTTCATT
TCACCTTGAGTGACGGCCTCAAATTCAGCAATCCGGAAGGTGATCTGGCG
ACGCTCGCGACCCGCGGTGTCGACCTCGCATGGCTGAACCCAGTGCTTAA
GGACATGACGCTCAGCGGTTACCTGGCGAGCGCGGATTTCAAAGTGGTGG
CGCCGAGTGCCGGCGCTCTGAGCTTGAGTGCCGTTGGTCCGCTCAGTATC
GAAGGCTTTGGCCTCCGCCGCGATGGCCGGCAACTGTTGCGTGGTCTTGC
GTTCAAGGTCGCCCCCGACCTGCAGTACAGCACGAGCGATAGCCGCGCGT
CGTTCAAGAATTTAAGTATCCGCAGCGGCGCTGGCAGTCTCGTCAGCGGT
GACCTCGACGTGGCCATCCATACCGAAGTCGATCAGGCGCCACATATCGC
GACCAAGGGCCGCCTCAGCTTGGATGTCGTGCGGCTCGCCGGGCAGCCGG
TGGTCGCGACCGCCTTGCAAGAGCCACTGCCGGAATTGGCGCTTGAAGCA
GCGCTCGAATTCGACCTTGAGCTGCAAGCTGAGACGATCAAGGTCAATCG
CAGTCATGCCGAACTCAAGGTCGGTGATCGTGCCAGGCTCACGCTCGACA
CCACCCCAGGTCTTGCGCTCAAGACCCAACTGGCGGCCGGTGAGGACCTT
GCTCAGCACTTCATCGGTGCCGCCTCACTCGACATCAAGGATCTTTCTTC
CGAGACCTTGAACCGCTTCGTGCCGCTCGGCCCCTTGAGCTTCGCCGAGA
TCAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11944:3..2057-

>mRNA_P-wetherbeei_contig11944.1.1 ID=mRNA_P-wetherbeei_contig11944.1.1|Name=mRNA_P-wetherbeei_contig11944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2010bp|location=Sequence derived from alignment at P-wetherbeei_contig11944:3..2057- (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCTCGCCATAACGGAGGTGAATCGCGGTCGCGTGCGCCTGCTCGA
CGCCAAGTTCGATAGTGAGTTGCCGCTGCAGCCGGCGCGCGACGCCCAGC
ACCTGGAAGTCATGCTCGAAGTTGAACCGCCGTCGGAGTATCTCGAAGAG
CGTAAAGAAGCGCGCGTGGTGTCGGCGCCCGATGGCAGCGCTCACACCCT
GCCCGATCCCGAGGCCCTGTCCTTGCGCGTGCGCCTTGGCGATGAAGCAC
CGGCGCGGTTTGAGATCTCCGGGCGCTATCGCGGTGAAGACGGCGTGTTC
CGTGGCCACTATCGGCTGGCCGATATTGGTCCGCTGCTGAACACCTTGAG
TGGCGGCGCGCCGCTGCCGAGCCTGGTCACCGACACTCAAGGTCAGGTGG
AGCTCGACAGCTTTCATCTGCGCGGCAAGCTGGCGCTTAAGTCGCGCACC
CGCGTCAGTGACCTCCAGCATGTGCTGGGCGACACCGCTGCGCTGCCCCA
GCACCTCGATATGGCCCTCAGCACCCAGGGCAACTTCGACACCGAGCAGT
TTACGCTCGCCGCGCTCAAGCTTGACCTCATCGATACCAATACCATCAAC
CGCTTCGCGCTGGTGATGGGCGCTCCACTCAGTGTGCCGTTTGCGACACC
GCAGAGCGTGCTCGACACGCCGCGCGAACTTGCGCGCCTGGTGGTCGGGC
CCTTACCGCTGGCATGGCTGCAGGGTCTCGCCGAGGGCCAGGTCTTGAAC
GGCGAATTGCTCGGCCCCTATGCGCTCCTCATCGATGAGCAGAAACGTGT
CCGACTCGAAGCACTCGCGCCCACCAGCATTAACGGCGTGCGCGCTGCCG
CCGTCACTGAGACCGTGATGATCGAGAACCTGAGCCTGCTGGCGAGCCCG
TCAGCGAGCTGGTCGACGGATTTTCTCCGCTACGCACTGAATGACGTGCA
CATCCTGATCGGCGAGGCCAGGCTCGCCGAATTCAGCGTCAAGGCCGCCA
GCAAACAAAGCGAGGATGCGCTGCGCACCTGGCGTTATCGCACCGAGGCT
GCGCTGCACTACGACGCACTCGCATTGGTGCCATCCGCCGCGGAACGCAT
CCAGGATTATCCCTTACCCAGTGGCACCAGTGCTGCATTCAAGGGCATCG
TGGCGATGCGCGCTGAGGCCTTGTCGGTGGACAAGGCCCAGCTCGAAGTC
AGCGGTCCCGAAAGTCCCAAGCTCGTGCGGCTCGACGGTCTGCGACCCTT
TCATTTCACCTTGAGTGACGGCCTCAAATTCAGCAATCCGGAAGGTGATC
TGGCGACGCTCGCGACCCGCGGTGTCGACCTCGCATGGCTGAACCCAGTG
CTTAAGGACATGACGCTCAGCGGTTACCTGGCGAGCGCGGATTTCAAAGT
GGTGGCGCCGAGTGCCGGCGCTCTGAGCTTGAGTGCCGTTGGTCCGCTCA
GTATCGAAGGCTTTGGCCTCCGCCGCGATGGCCGGCAACTGTTGCGTGGT
CTTGCGTTCAAGGTCGCCCCCGACCTGCAGTACAGCACGAGCGATAGCCG
CGCGTCGTTCAAGAATTTAAGTATCCGCAGCGGCGCTGGCAGTCTCGTCA
GCGGTGACCTCGACGTGGCCATCCATACCGAAGTCGATCAGGCGCCACAT
ATCGCGACCAAGGGCCGCCTCAGCTTGGATGTCGTGCGGCTCGCCGGGCA
GCCGGTGGTCGCGACCGCCTTGCAAGAGCCACTGCCGGAATTGGCGCTTG
AAGCAGCGCTCGAATTCGACCTTGAGCTGCAAGCTGAGACGATCAAGGTC
AATCGCAGTCATGCCGAACTCAAGGTCGGTGATCGTGCCAGGCTCACGCT
CGACACCACCCCAGGTCTTGCGCTCAAGACCCAACTGGCGGCCGGTGAGG
ACCTTGCTCAGCACTTCATCGGTGCCGCCTCACTCGACATCAAGGATCTT
TCTTCCGAGACCTTGAACCGCTTCGTGCCGCTCGGCCCCTTGAGCTTCGC
CGAGATCAAT
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