mRNA_P-wetherbeei_contig11939.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11939.1.1
Unique NamemRNA_P-wetherbeei_contig11939.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A835YR02_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR02_9STRA)

HSP 1 Score: 310 bits (795), Expect = 7.860e-99
Identity = 148/216 (68.52%), Postives = 177/216 (81.94%), Query Frame = 1
Query:   16 QGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            QG+F ALS IN+FPGERML+LRERAAGTYY SAYF+AK+ AET+ Q+ LPI+F+CIVYF+IG Q++ASKFFIFM  ++LCSL+ATSLAL+VSA CRTTDLSVTVLP  LE+CRLFG FFLSP + PGYF WLDALSYVKY +V +SLNE  GL  TCT  +EI V G+T+CPI  GD  L S+GM+NW++G C G+LV YI   RF AYLGVR +K
Sbjct:  473 QGLFSALSTINSFPGERMLSLRERAAGTYYTSAYFMAKVLAETVMQIILPILFTCIVYFLIGLQNEASKFFIFMAFMVLCSLAATSLALLVSAFCRTTDLSVTVLPFMLEICRLFGAFFLSPANTPGYFVWLDALSYVKYCYVGVSLNENHGLTLTCTPEEEIDVGGITQCPIPNGDAFLESQGMENWTMGACAGILVFYIFFARFLAYLGVRFLK 688          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A8J4BJG2_9CHLO (ABC2_membrane domain-containing protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4BJG2_9CHLO)

HSP 1 Score: 284 bits (726), Expect = 8.520e-93
Identity = 144/221 (65.16%), Postives = 173/221 (78.28%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F    QG+FGAL VIN+FP ERML+LRERAAGTY+ SAYFLAKITAET+ QLP PI+FSC+VYF++G+Q  ASKFFIFM  ++LCSLSATSLAL VSAI RTTD++VTVLPMALEVCRLFGGFFLSP ++P YF WL+ALSYV+Y++V +SLNE  GLE  CT +Q     G  +CP   G+  + + G+   SIGGC GVL+ YI+  R  AYLGVR IK
Sbjct:  112 FTVINQGMFGALIVINSFPSERMLSLRERAAGTYHVSAYFLAKITAETVSQLPAPILFSCVVYFLVGFQAVASKFFIFMAFMVLCSLSATSLALAVSAIARTTDMAVTVLPMALEVCRLFGGFFLSPANIPNYFKWLNALSYVQYTYVGISLNELHGLELYCTPSQLNPKTG--QCPTTAGEQTIKALGLDYISIGGCAGVLIGYILFCRVVAYLGVRYIK 330          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A2J7ZUP2_9CHLO (ATP-binding cassette sub-family G member 2 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZUP2_9CHLO)

HSP 1 Score: 289 bits (739), Expect = 3.260e-91
Identity = 143/221 (64.71%), Postives = 175/221 (79.19%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F    QG+FGAL VIN+FP ERML+LRERAAGTY+ SAY+LAK  AET+ QLP PIIFSCIVYF++G+Q DASKFFI+MG ++LCS +ATSLAL VSAI RTTD++VT+LPMALE+CRLFGGFFLSP +LP YF WLDALSYVKYS++ +SLNE  GL+  CT AQ   +N   +CPI +G+  + S G+   S+  C G+L+SYIII R  AYLGVR +K
Sbjct:  401 FTVINQGMFGALIVINSFPSERMLSLRERAAGTYHVSAYYLAKSVAETVSQLPAPIIFSCIVYFLVGFQPDASKFFIYMGFMVLCSTAATSLALAVSAIARTTDMAVTILPMALEICRLFGGFFLSPANLPNYFKWLDALSYVKYSYIGISLNELTGLKLHCTPAQ---LNAAGKCPITSGEQTIKSLGLDYISMNDCAGILISYIIICRIIAYLGVRFLK 618          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A835WTF6_9CHLO (ABC transporter domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A835WTF6_9CHLO)

HSP 1 Score: 284 bits (727), Expect = 2.270e-89
Identity = 143/216 (66.20%), Postives = 173/216 (80.09%), Query Frame = 1
Query:   16 QGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            QG+FGAL VIN+FP ERMLALRERAAGTY+ SAYFLAKITAET+ QLP PI+FSC+VY+++G Q  A+KFFIFMG +ILCS +ATSLAL VSA+ RTTD+SVT+LPMALE+CRLFGGFFLSP +LP YF WLDALSYVKY++V +SLNE  GL  TCT  Q   +N   +CPI +G   + S G+   ++G C G+LV+YI I RF AYLGVR +K
Sbjct:  411 QGMFGALIVINSFPSERMLALRERAAGTYHVSAYFLAKITAETLSQLPAPILFSCVVYWLVGLQAVAAKFFIFMGFMILCSTAATSLALAVSALARTTDMSVTILPMALEICRLFGGFFLSPANLPKYFVWLDALSYVKYTYVGISLNELGGLTLTCTPPQ---LNAAGKCPITSGQQTIDSLGLDYLNMGQCAGILVAYIFICRFVAYLGVRFLK 623          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A150GN65_GONPE (ABC transporter domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GN65_GONPE)

HSP 1 Score: 284 bits (727), Expect = 2.740e-89
Identity = 141/221 (63.80%), Postives = 175/221 (79.19%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F    QG+FGAL VIN+FP ERML+LRERAAGTY+ SAYFLAK+TAETI QLP PI+FSC+VYF++G Q  ASKFFI+M +++LCS +ATSLAL VSAI RTTD++VT+LPMALE+CRLFGGFFLSP +LP YFSWLDALSYVKY++V +SLNE  GLE  CT +Q   +N   +CPI +G+  + S G+    I  C G+L++YI+I R  AYLGVR +K
Sbjct:  414 FTVINQGMFGALIVINSFPSERMLSLRERAAGTYHCSAYFLAKVTAETISQLPAPILFSCVVYFLVGLQPVASKFFIYMALMVLCSTAATSLALAVSAIARTTDMAVTILPMALEICRLFGGFFLSPANLPKYFSWLDALSYVKYTYVGISLNELHGLELHCTPSQ---LNSAGKCPITSGEQTIKSLGLDYIGIADCVGILIAYIVICRVIAYLGVRYLK 631          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A8J4CN86_9CHLO (ABC transporter domain-containing protein n=8 Tax=Volvox TaxID=3066 RepID=A0A8J4CN86_9CHLO)

HSP 1 Score: 283 bits (724), Expect = 4.640e-89
Identity = 143/221 (64.71%), Postives = 174/221 (78.73%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F    QG+FGAL VIN+FP ERML+LRERAAGTY+ SAYFLAKITAET+ QLP PI+FSC+VYF++G+Q  ASKFFIFM  ++LCSLSATSLAL VSAI RTTD++VTVLPMALEVCRLFGGFFLSP ++P YF WL+ALSYV+Y++V +SLNE  GL+  CT +Q     G  +CP  +G+  + + G+   SIGGC GVL+ YI+  R  AYLGVR IK
Sbjct:  392 FTVINQGMFGALIVINSFPSERMLSLRERAAGTYHVSAYFLAKITAETVSQLPAPILFSCVVYFLVGFQAVASKFFIFMAFMVLCSLSATSLALAVSAIARTTDMAVTVLPMALEVCRLFGGFFLSPANIPNYFKWLNALSYVQYTYVGISLNELHGLKLYCTPSQLNAKTG--QCPTTSGEQTIKALGLDYISIGGCAGVLIGYILFCRVVAYLGVRYIK 610          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: D8TMA3_VOLCA (ABC transporter domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TMA3_VOLCA)

HSP 1 Score: 283 bits (724), Expect = 4.870e-89
Identity = 144/221 (65.16%), Postives = 174/221 (78.73%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F    QG+FGAL VIN+FP ER+L+LRERAAGTY+ SAYFLAKITAETI QLP PI+FSCIVYF++G+Q  ASKFFIFM  ++LCSLSATSLAL VSAI RTTD++VTVLPMALEVCRLFGGFFLSP ++P YF WL+ALSYV+Y++V +SLNE  GL+  C   Q   +N   +CP+ +G+  + + G+   SIGGC GVL+ YII  R  AYLGVR IK
Sbjct:  395 FTVINQGMFGALIVINSFPSERLLSLRERAAGTYHVSAYFLAKITAETISQLPAPILFSCIVYFLVGFQLVASKFFIFMAFMVLCSLSATSLALAVSAIARTTDMAVTVLPMALEVCRLFGGFFLSPANIPLYFKWLNALSYVQYTYVGISLNELHGLKLYCAPNQ---INSSGKCPVTSGEQTIKALGLDYISIGGCAGVLIGYIIFCRVVAYLGVRFIK 612          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A150GN10_GONPE (ABC transporter domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GN10_GONPE)

HSP 1 Score: 283 bits (723), Expect = 1.060e-88
Identity = 143/225 (63.56%), Postives = 177/225 (78.67%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMA----LEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F    QG+FGAL VIN+FP ERML+LRERAAGTY+ SAYFLAK+TAETI QLP PI+FSC+VYF++G Q  ASKFFI+M +++LCS +ATSLAL VSAI RTTD++VT+LPMA    LE+CRLFGGFFLSP +LP YFSWLDALSYVKY++V +SLNE  GLE  CT +Q   +N   +CPI +G+  + S G+   SIG C G+L++YI+I R  AYLGVR +K
Sbjct:  409 FTVINQGMFGALIVINSFPSERMLSLRERAAGTYHCSAYFLAKVTAETISQLPAPILFSCVVYFLVGLQPVASKFFIYMALMVLCSTAATSLALAVSAIARTTDMAVTILPMASPGALEICRLFGGFFLSPANLPKYFSWLDALSYVKYTYVGISLNELHGLELHCTPSQ---LNSAGKCPITSGEQTIKSLGLDYISIGDCVGILIAYIVICRLIAYLGVRYLK 630          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A821HT55_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A821HT55_9BILA)

HSP 1 Score: 270 bits (689), Expect = 2.660e-86
Identity = 137/221 (61.99%), Postives = 173/221 (78.28%), Query Frame = 1
Query:    1 FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            F +  QGVFGAL VIN+FP ER L LRERA+GTYYASAYF+AKI AET+ Q+P+PIIFS ++YF+IG+Q  A KFF+F   ++LCSL+ATSLAL+VSAIC+TTD+SVTVLP+ALE+ RLFGGFFL+P  LP YF+WLDALSYVKY+FV ++LNE +GL  TCT A     +    C IE+G+ +++ +G    SIGGC GVL+ YII  R  A+LGVR +K
Sbjct:  182 FCAVNQGVFGALMVINSFPVERALTLRERASGTYYASAYFIAKIVAETLIQIPVPIIFSSVLYFLIGFQATAGKFFLFAFFMLLCSLAATSLALLVSAICKTTDMSVTVLPLALEITRLFGGFFLAPSRLPKYFAWLDALSYVKYTFVGIALNELQGLTLTCTDADRAKYS----C-IESGEALIIERGYNYISIGGCIGVLIGYIIFCRIIAFLGVRFLK 397          
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Match: A0A836CJS3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS3_9STRA)

HSP 1 Score: 276 bits (707), Expect = 3.060e-86
Identity = 135/216 (62.50%), Postives = 167/216 (77.31%), Query Frame = 1
Query:   16 QGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIFQLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAICRTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVALSLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCGVLVSYIIITRFFAYLGVRIIK 663
            QG+F AL+VIN+FPGERML+LRERAAGTYY SAYF+AK+ AET  Q+ LPIIFSC+VY+I+G Q  ASKFFIFMG +ILCSL ATSLAL+VSA  RTTDLSVTVLP  LE  RLFG F++ P + P YF WL+A+SYV YS++ +S+NE   L  TCT ++ I VNGVT+CP+  G+ VL   G+   S+G C G+L+ YI+  RF AYLGVR +K
Sbjct:  423 QGLFSALAVINSFPGERMLSLRERAAGTYYTSAYFMAKMLAETALQIVLPIIFSCLVYWIVGLQPVASKFFIFMGFMILCSLGATSLALLVSAFARTTDLSVTVLPFMLETFRLFGAFYMPPSNTPNYFEWLNAISYVTYSYIGVSINENTDLTLTCTESELIEVNGVTQCPVPNGNVVLEKDGLNRLSMGACAGILIFYIVFVRFLAYLGVRFLK 638          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11939.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YR02_9STRA7.860e-9968.52P-loop containing nucleoside triphosphate hydrolas... [more]
A0A8J4BJG2_9CHLO8.520e-9365.16ABC2_membrane domain-containing protein n=5 Tax=Vo... [more]
A0A2J7ZUP2_9CHLO3.260e-9164.71ATP-binding cassette sub-family G member 2 n=1 Tax... [more]
A0A835WTF6_9CHLO2.270e-8966.20ABC transporter domain-containing protein n=3 Tax=... [more]
A0A150GN65_GONPE2.740e-8963.80ABC transporter domain-containing protein n=1 Tax=... [more]
A0A8J4CN86_9CHLO4.640e-8964.71ABC transporter domain-containing protein n=8 Tax=... [more]
D8TMA3_VOLCA4.870e-8965.16ABC transporter domain-containing protein n=1 Tax=... [more]
A0A150GN10_GONPE1.060e-8863.56ABC transporter domain-containing protein n=1 Tax=... [more]
A0A821HT55_9BILA2.660e-8661.99Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A836CJS3_9STRA3.060e-8662.50P-loop containing nucleoside triphosphate hydrolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11939contigP-wetherbeei_contig11939:33..1411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3067.XP_002947559.1
PFAMsABC2_membrane,ABC_tran
Model size669
Max annot lvl3041|Chlorophyta
KEGG koko:K05681,ko:K21396
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryother localisation
Exons4
Evalue7.99e-90
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota,37YH9@33090|Viridiplantae,34J9N@3041|Chlorophyta
DescriptionABC-2 type transporter
Cds size669
COG categoryQ
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.3213916-CDS-P-wetherbeei_contig11939:32..4871683185932.3213916-CDS-P-wetherbeei_contig11939:32..487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11939 33..487 -
1683185932.330679-CDS-P-wetherbeei_contig11939:728..8011683185932.330679-CDS-P-wetherbeei_contig11939:728..801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11939 729..801 -
1683185932.3401823-CDS-P-wetherbeei_contig11939:1085..11201683185932.3401823-CDS-P-wetherbeei_contig11939:1085..1120Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11939 1086..1120 -
1683185932.3489149-CDS-P-wetherbeei_contig11939:1305..14111683185932.3489149-CDS-P-wetherbeei_contig11939:1305..1411Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11939 1306..1411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11939.1.1prot_P-wetherbeei_contig11939.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11939 33..1411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11939.1.1

>prot_P-wetherbeei_contig11939.1.1 ID=prot_P-wetherbeei_contig11939.1.1|Name=mRNA_P-wetherbeei_contig11939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
FPSSRQGVFGALSVINNFPGERMLALRERAAGTYYASAYFLAKITAETIF
QLPLPIIFSCIVYFIIGYQHDASKFFIFMGVLILCSLSATSLALMVSAIC
RTTDLSVTVLPMALEVCRLFGGFFLSPKDLPGYFSWLDALSYVKYSFVAL
SLNEERGLEYTCTAAQEITVNGVTRCPIETGDDVLVSKGMQNWSIGGCCG
VLVSYIIITRFFAYLGVRIIKC*
back to top

mRNA from alignment at P-wetherbeei_contig11939:33..1411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11939.1.1 ID=mRNA_P-wetherbeei_contig11939.1.1|Name=mRNA_P-wetherbeei_contig11939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1379bp|location=Sequence derived from alignment at P-wetherbeei_contig11939:33..1411- (Phaeothamnion wetherbeei SAG_119_79)
TTCCCCTCGTCACGACAGGGTGTCTTCGGCGCACTCTCCGTCATCAACAA CTTCCCGGGCGAGCGCATGCTGGCGCTGCGTGAGCGGGCGGCCGGCACGT ACTATGGTAAGGAGACAAGATGGACCGACCACTGCAGCGTAGCCGAGATG GTGAAATACGGAGAGAGGAAGAAAGAATACTTCCGCCGATAAACACGAGC TGATGCAATCCTCCTCTTGCCCTGTTTTCCTGTACTCCGCCGCCGCCGCC GCCGCCGCCGCCGCTATTCGCCGTCGTTTGCGCATCTACAGCAAGTGCAT ACTTCCTGGCCAAGATTACAGCAGAGGTGAGGTCGTTATCGTTTCATTAA ACTTTTGACAAAGCTTCAATGCTGGAGTGCGTGCCAGGAGGTTGCTACCT TGATTCTCTGTCATCTATGTGATGTTTGCTGGAGGAGGAACGCGGTGGAG GTGGTGTCTCAGCATACTTTTTAAACGCCGGGGCGTACGCTGAAAACAGT TACCGGCGCGGCGCTGCTTTGCTCGGCGCGCTGGCGGAAACCTCATCGAT TTTCTGCTGCTCCTTTCCGTTGCCGTGAATGTCGTTCTTTCCCCTTTTCG AACAAAACAGACCATCTTCCAGCTCCCACTCCCCATCATCTTTAGCTGCA TCGTCTACTTCATTATTGGTTACCAGCACGATGGTGCGTGTCTGTAGCTG TTCTCAACCCCTGAATGGCTGAGCGGAGGCTTTGGTGCACCGGGAATATT GCGCTTTCCTTTTTATCTGGCCCTCTTTCTTTCTGAGTTTCGGGCTCACT AGAGATGCCCTTCGCTCCGATCGCTCTCACCTCCTCATATCCTTATTCTC CTCTCCATTCCTTTCCCTTGAAATCCATCTGTCTCCTTCCTTCCTTCTTA TTCGTCCGCTCACCCGCCCGGCAGCCTCCAAGTTCTTCATCTTCATGGGC GTGCTCATCCTCTGCTCCCTCTCAGCCACCTCCCTCGCGCTCATGGTATC CGCCATCTGCCGGACGACCGATCTATCCGTCACGGTCCTCCCGATGGCGC TCGAAGTGTGCCGCCTCTTCGGCGGCTTCTTCCTCTCGCCAAAGGATCTC CCGGGTTACTTCTCGTGGCTCGACGCGCTCTCCTATGTCAAGTACTCGTT CGTGGCGCTCTCCCTCAACGAGGAGCGCGGCCTGGAGTACACGTGCACGG CGGCGCAGGAGATCACGGTGAACGGCGTCACGAGGTGCCCGATCGAGACG GGCGATGACGTGCTGGTTTCCAAAGGCATGCAGAACTGGTCCATCGGCGG CTGTTGCGGGGTGCTCGTCAGCTACATCATCATCACACGATTCTTCGCCT ACCTCGGCGTACGCATTATCAAGTGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11939:33..1411-

>mRNA_P-wetherbeei_contig11939.1.1 ID=mRNA_P-wetherbeei_contig11939.1.1|Name=mRNA_P-wetherbeei_contig11939.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig11939:33..1411- (Phaeothamnion wetherbeei SAG_119_79)
TTCCCCTCGTCACGACAGGGTGTCTTCGGCGCACTCTCCGTCATCAACAA
CTTCCCGGGCGAGCGCATGCTGGCGCTGCGTGAGCGGGCGGCCGGCACGT
ACTATGCAAGTGCATACTTCCTGGCCAAGATTACAGCAGAGACCATCTTC
CAGCTCCCACTCCCCATCATCTTTAGCTGCATCGTCTACTTCATTATTGG
TTACCAGCACGATGCCTCCAAGTTCTTCATCTTCATGGGCGTGCTCATCC
TCTGCTCCCTCTCAGCCACCTCCCTCGCGCTCATGGTATCCGCCATCTGC
CGGACGACCGATCTATCCGTCACGGTCCTCCCGATGGCGCTCGAAGTGTG
CCGCCTCTTCGGCGGCTTCTTCCTCTCGCCAAAGGATCTCCCGGGTTACT
TCTCGTGGCTCGACGCGCTCTCCTATGTCAAGTACTCGTTCGTGGCGCTC
TCCCTCAACGAGGAGCGCGGCCTGGAGTACACGTGCACGGCGGCGCAGGA
GATCACGGTGAACGGCGTCACGAGGTGCCCGATCGAGACGGGCGATGACG
TGCTGGTTTCCAAAGGCATGCAGAACTGGTCCATCGGCGGCTGTTGCGGG
GTGCTCGTCAGCTACATCATCATCACACGATTCTTCGCCTACCTCGGCGT
ACGCATTATCAAGTGCTGA
back to top