mRNA_P-wetherbeei_contig11931.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11931.1.1
Unique NamemRNA_P-wetherbeei_contig11931.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: D7G4F2_ECTSI (5'-3' exoribonuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F2_ECTSI)

HSP 1 Score: 414 bits (1064), Expect = 2.230e-138
Identity = 196/255 (76.86%), Postives = 226/255 (88.63%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQVL 765
            MGVPAFYRWLSEKYPKIVVD++E+    V+GT +P+DL+  NPNGIEFDNLY+DMNGIIHPC+HPED+P PESEEEMY N+M+Y+DRLF+AVRPR+LL++AIDGVAPRAKMNQQR+RRFR+A+E  E  ELMEETRQ M  +G +VPP A  AWDSN+ITPGT FMH+LS +LRFYVQDRVNRD+AW++I VILSDA+EPGEGEHKIMDFVRRQRT  GYDPN  H+LHGLDADLIMLGLATHE  FTILREQVL
Sbjct:    1 MGVPAFYRWLSEKYPKIVVDMLEDHAARVEGTEIPLDLTAENPNGIEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYIDRLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGVKVPPKAKPAWDSNIITPGTEFMHKLSRYLRFYVQDRVNRDKAWQNIKVILSDASEPGEGEHKIMDFVRRQRTQPGYDPNQHHILHGLDADLIMLGLATHERSFTILREQVL 255          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: A0A6H5JF35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF35_9PHAE)

HSP 1 Score: 416 bits (1069), Expect = 6.170e-133
Identity = 197/255 (77.25%), Postives = 226/255 (88.63%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQVL 765
            MGVPAFYRWLSEKYPKIVVD++E+    VDGT +P+DL+  NPNGIEFDNLY+DMNGIIHPC+HPED+P PESEEEMY N+M+Y+DRLF+AVRPR+LL++AIDGVAPRAKMNQQR+RRFR+A+E  E  ELMEETRQ M  +G +VPP A  AWDSN+ITPGT FMH+LS +LRFYVQDRVNRD+AW++I VILSDA+EPGEGEHKIMDFVRRQRT  GYDPN  H+LHGLDADLIMLGLATHE  FTILREQVL
Sbjct:    1 MGVPAFYRWLSEKYPKIVVDMLEDHAARVDGTEIPLDLTAENPNGIEFDNLYIDMNGIIHPCSHPEDKPPPESEEEMYKNIMDYIDRLFSAVRPRRLLYLAIDGVAPRAKMNQQRSRRFRSAQEAEEAAELMEETRQAMKEMGMKVPPKAKPAWDSNIITPGTEFMHKLSRYLRFYVQDRVNRDKAWQNIKVILSDASEPGEGEHKIMDFVRRQRTQPGYDPNQHHILHGLDADLIMLGLATHERSFTILREQVL 255          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: A0A7S1UB78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UB78_9STRA)

HSP 1 Score: 370 bits (950), Expect = 5.090e-124
Identity = 178/255 (69.80%), Postives = 214/255 (83.92%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQVL 765
            MGVPAFYRWLSE+YPKI+VD+IE K    D   +P+D + PNPN IEFDNLYVDMNGIIHPC+HPEDRP P +EEEM+ NV  YVDRLFAAVRPRKLLF+AIDGVAPRAKMNQQR+RRF++ +E+ E +E MEE RQ+M+A+G +VPP A   WDSNVITPGT FM +L+ FLR+Y+ DR N++ AW++I V+ SDANEPGEGEHKIM+++R QR+  GY+PN +HV+HGLDADLIML LATHE  FTILREQVL
Sbjct:   17 MGVPAFYRWLSERYPKIIVDMIEAKPVDPD---VPLDTTTPNPNSIEFDNLYVDMNGIIHPCSHPEDRPPPRNEEEMFRNVCYYVDRLFAAVRPRKLLFLAIDGVAPRAKMNQQRSRRFKSVKEMREGQEAMEEVRQDMMAMGLKVPPKAKPGWDSNVITPGTQFMDKLAIFLRYYILDRCNKNPAWKNIKVVFSDANEPGEGEHKIMNYIRAQRSHAGYEPNQKHVIHGLDADLIMLALATHEADFTILREQVL 268          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: A0A4D9CT15_9STRA (5'-3' exoribonuclease n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT15_9STRA)

HSP 1 Score: 372 bits (954), Expect = 1.920e-120
Identity = 175/255 (68.63%), Postives = 210/255 (82.35%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPA-SAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQV 762
            MGVPAF+RWLSEKYP+ V+D++E++ + VDG PLPMDL  PNPN +EFDNLY+DMNGIIHPC+HPEDRP P++E EM+ NVM YVDR+FAAVRPR+L+F+AIDGVAPRAKMNQQR RRFR+A +  ER E+   TRQEM+ +G  VPP      WDSNVITPGT FM  L+ +LRFYV  RVN  +AW+ + V+ SD +EPGEGEHKIMDF+R++R   GYDPNT+H+LHGLDADLIML LATHEP FTILREQV
Sbjct:    1 MGVPAFFRWLSEKYPRTVLDMVEQRPQVVDGVPLPMDLRAPNPNNMEFDNLYIDMNGIIHPCSHPEDRPTPKTEAEMFVNVMVYVDRIFAAVRPRRLVFLAIDGVAPRAKMNQQRTRRFRSAGDARERHEIKVATRQEMVEMGLPVPPEELDKEWDSNVITPGTEFMVTLASYLRFYVAHRVNTCKAWQQVKVLFSDGSEPGEGEHKIMDFIRKERAQPGYDPNTRHILHGLDADLIMLALATHEPHFTILREQV 255          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: E1ZGU2_CHLVA (XRN_N domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGU2_CHLVA)

HSP 1 Score: 349 bits (895), Expect = 5.630e-118
Identity = 164/252 (65.08%), Postives = 205/252 (81.35%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILRE 756
            MGVP++YRWLS++YPK+V D++E++ + ++G  +P+D S+PNPNG+EFDNLY+DMNGIIHPC HPEDRPAP +E+E++  + +Y+DRLFA VRPRKLL+MAIDGVAPRAKMNQQR+RRFRAA+E  ER++  E+ R E    G +VP   SA +DSNVITPGT FMHRLS  L++Y+  R+N D  WR I VILSDAN PGEGEHKIM ++R QR   GY PNT+H ++GLDADLIML LATHEPRF ILRE
Sbjct:    1 MGVPSYYRWLSQRYPKVVKDVVEDEVQVINGVEVPVDTSQPNPNGLEFDNLYLDMNGIIHPCFHPEDRPAPTTEQEVFTTMFDYIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAQEAEEREKEEEKLRDEFAKQGIKVPKKESAVFDSNVITPGTPFMHRLSVALQYYIHLRLNADPGWRGIKVILSDANSPGEGEHKIMAYIREQRGLPGYSPNTRHCIYGLDADLIMLALATHEPRFAILRE 252          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: W7TMF7_9STRA (5'-3' exoribonuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMF7_9STRA)

HSP 1 Score: 373 bits (958), Expect = 5.870e-118
Identity = 176/255 (69.02%), Postives = 211/255 (82.75%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPA-SAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQV 762
            MGVPAF+RWLSEKYP+ V+D++E++ + VDG PLPMDL  PNPN +EFDNLY+DMNGIIHPC+HPEDRP P++E EM+ NVM YVDR+FAAVRPR+L+F+AIDGVAPRAKMNQQR RRFR+A +  ER E+   TRQEM+A+G  VPP      WDSNVITPGT FM  L+ +LRFYV  RVN  +AW+ + V+ SD +EPGEGEHKIMDF+R++R   GYDPNT+H+LHGLDADLIML LATHEP FTILREQV
Sbjct:    1 MGVPAFFRWLSEKYPRTVLDMVEQRPQVVDGVPLPMDLRAPNPNNMEFDNLYIDMNGIIHPCSHPEDRPTPKTEAEMFVNVMVYVDRIFAAVRPRRLVFLAIDGVAPRAKMNQQRTRRFRSAGDARERHEIKLATRQEMVAMGLPVPPEELDKEWDSNVITPGTEFMVTLASYLRFYVAHRVNTCKAWQQVKVLFSDGSEPGEGEHKIMDFIRKERAQPGYDPNTRHILHGLDADLIMLALATHEPHFTILREQV 255          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: A0A1B6FQ92_9HEMI (XRN_N domain-containing protein (Fragment) n=2 Tax=Proconiini TaxID=565685 RepID=A0A1B6FQ92_9HEMI)

HSP 1 Score: 342 bits (876), Expect = 4.850e-116
Identity = 166/255 (65.10%), Postives = 202/255 (79.22%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPAS--AAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQ 759
            MGVPAF+RWLS KYP ++V+ IEEK   +DGT +P+D S+PNPNG+EFDNLY+DMNGIIHPC HPED+PAP++E+EM   + E +DRLF  VRPRKLL+MAIDGVAPRAKMNQQR+RRFRA++E  E+ + +   R+EM   G  +PP  +  A +DSN ITPGT FM RLS  L +Y+ DR+N D  WR+I VILSDAN PGEGEHKIMD++RRQR    +DPNTQH L G DADLIMLGLATHEP FTI+RE+
Sbjct:    1 MGVPAFFRWLSRKYPSVIVNCIEEKNTQLDGTYIPVDSSQPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETVEKIQEIARIRKEMSGKGLILPPEKAKEAHFDSNCITPGTPFMARLSNCLHYYIHDRLNNDPGWRNIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREE 255          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: A0A5N5SR67_9CRUS (5'-3' exoribonuclease 2-like protein n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5SR67_9CRUS)

HSP 1 Score: 347 bits (891), Expect = 2.520e-115
Identity = 168/257 (65.37%), Postives = 207/257 (80.54%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTP--LPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPP--PASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQ 759
            MGVPAF+RWLS KYP ++++ +EE+    +G+   +P+D S+PNPNGIEFDNLY+DMNGIIHPC HPED+PAP+ E+EM   + E +DRLFA VRPRKLL+MAIDGVAPRAKMNQQR+RRFRA++E  E+K+ ++  R+E+I+ G+ VPP  P  A +DSN ITPGT FM RLS+ L +YV DR+N D  W +I VILSDAN PGEGEHKIMDF+RRQR    +DPNTQHVL G DADLIMLGLATHEP FTI+RE+
Sbjct:    1 MGVPAFFRWLSRKYPSVIIECVEERTFAPEGSEVKIPIDTSKPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIFECIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKEAQEKKDEIKRIREELISKGYNVPPEKPKEAHFDSNCITPGTPFMDRLSKCLHYYVHDRLNNDPGWANIKVILSDANCPGEGEHKIMDFIRRQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREE 257          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: UPI001454C12E (5'-3' exoribonuclease 2 homolog n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI001454C12E)

HSP 1 Score: 338 bits (867), Expect = 1.600e-114
Identity = 164/255 (64.31%), Postives = 199/255 (78.04%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPP--PASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQ 759
            MGVPAF+RWLS KY  ++V  IEEK + V+G  +P+D ++PNPNG+EFDNLY+DMNGIIHPC HPED+PAP+ E+EM   + E +DRLF  VRPRKLL+MAIDGVAPRAKMNQQR+RRFRA++E  E+ + +   R E+ A G  +PP  P  + +DSN ITPGT FM RLS  L +Y+ DR+N D AWR I VILSDAN PGEGEHKIMD++RRQR    +DPNTQH L G DADLIMLGLATHEP FTI+RE+
Sbjct:    1 MGVPAFFRWLSRKYTSVIVPCIEEKPKEVNGVNVPVDSTKPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMIAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETVEKIQEITRVRSELAAKGCHLPPEKPKESHFDSNCITPGTPFMARLSSCLHYYIHDRMNNDPAWRGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHCLCGADADLIMLGLATHEPNFTIIREE 255          
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Match: A0A0D2JDS0_9CHLO (5'-3' exoribonuclease 2 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2JDS0_9CHLO)

HSP 1 Score: 342 bits (876), Expect = 1.870e-114
Identity = 169/255 (66.27%), Postives = 200/255 (78.43%), Query Frame = 1
Query:    1 MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDNLYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVP-PPASAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEPGEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTILREQV 762
            MGVPAFYRWLSEKYPKI+VD+ EE   +++G  +P+D S PNPNGIEFDNLY+DMNGIIHPC HPEDRPAP +E E++ N+ +Y+DRLFA VRPRK+L+MAIDGVAPRAKMNQQR+RRFRAA+E+ E++   E  R+E    G  VP    S   DSN ITPGT FMHRLS  L++YV  R+N D  WRDI VILSD+N PGEGEHK M FVR QR   G++PNT+H ++GLDADLIML LATHEP F ILRE V
Sbjct:    1 MGVPAFYRWLSEKYPKIIVDVKEELPEWINGVEVPVDTSTPNPNGIEFDNLYLDMNGIIHPCFHPEDRPAPTTEREVFLNIFDYIDRLFAMVRPRKVLYMAIDGVAPRAKMNQQRSRRFRAAQEMEEKEAEEERLREEFARQGIVVPRKERSEIHDSNTITPGTPFMHRLSVALQYYVHTRLNDDPGWRDIEVILSDSNVPGEGEHKAMAFVREQRGRPGWNPNTRHCMYGLDADLIMLALATHEPHFAILREVV 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11931.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4F2_ECTSI2.230e-13876.865'-3' exoribonuclease n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JF35_9PHAE6.170e-13377.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UB78_9STRA5.090e-12469.80Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D9CT15_9STRA1.920e-12068.635'-3' exoribonuclease n=1 Tax=Nannochloropsis sali... [more]
E1ZGU2_CHLVA5.630e-11865.08XRN_N domain-containing protein (Fragment) n=1 Tax... [more]
W7TMF7_9STRA5.870e-11869.025'-3' exoribonuclease n=2 Tax=Monodopsidaceae TaxI... [more]
A0A1B6FQ92_9HEMI4.850e-11665.10XRN_N domain-containing protein (Fragment) n=2 Tax... [more]
A0A5N5SR67_9CRUS2.520e-11565.375'-3' exoribonuclease 2-like protein n=1 Tax=Armad... [more]
UPI001454C12E1.600e-11464.315'-3' exoribonuclease 2 homolog n=1 Tax=Cryptoterm... [more]
A0A0D2JDS0_9CHLO1.870e-11466.275'-3' exoribonuclease 2 n=1 Tax=Monoraphidium negl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11931contigP-wetherbeei_contig11931:202..1646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4F2
PFAMsXRN_N
Model size765
Max annot lvl2759|Eukaryota
KEGG koko:K12619
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.66e-139
EggNOG OGsCOG5049@1|root,KOG2044@2759|Eukaryota
Description5'-3' exoribonuclease activity
Cds size765
COG categoryADL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185932.0722885-CDS-P-wetherbeei_contig11931:201..3601683185932.0722885-CDS-P-wetherbeei_contig11931:201..360Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11931 202..360 -
1683185932.083594-CDS-P-wetherbeei_contig11931:635..8631683185932.083594-CDS-P-wetherbeei_contig11931:635..863Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11931 636..863 -
1683185932.0924377-CDS-P-wetherbeei_contig11931:1167..13761683185932.0924377-CDS-P-wetherbeei_contig11931:1167..1376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11931 1168..1376 -
1683185932.1013367-CDS-P-wetherbeei_contig11931:1477..16461683185932.1013367-CDS-P-wetherbeei_contig11931:1477..1646Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11931 1478..1646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11931.1.1prot_P-wetherbeei_contig11931.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11931 202..1646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11931.1.1

>prot_P-wetherbeei_contig11931.1.1 ID=prot_P-wetherbeei_contig11931.1.1|Name=mRNA_P-wetherbeei_contig11931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MGVPAFYRWLSEKYPKIVVDLIEEKKRYVDGTPLPMDLSRPNPNGIEFDN
LYVDMNGIIHPCAHPEDRPAPESEEEMYANVMEYVDRLFAAVRPRKLLFM
AIDGVAPRAKMNQQRARRFRAAEEVSERKELMEETRQEMIALGHRVPPPA
SAAWDSNVITPGTSFMHRLSEFLRFYVQDRVNRDRAWRDITVILSDANEP
GEGEHKIMDFVRRQRTAMGYDPNTQHVLHGLDADLIMLGLATHEPRFTIL
REQVL
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mRNA from alignment at P-wetherbeei_contig11931:202..1646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11931.1.1 ID=mRNA_P-wetherbeei_contig11931.1.1|Name=mRNA_P-wetherbeei_contig11931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1445bp|location=Sequence derived from alignment at P-wetherbeei_contig11931:202..1646- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGTCCCCGCGTTCTACCGATGGCTGAGCGAGAAGTACCCCAAAAT CGTGGTTGACCTAATCGAGGAAAAGAAGCGCTATGTCGACGGCACGCCGC TTCCCATGGACTTGTCGCGTCCAAATCCCAACGGAATAGAGTTCGACAAC CTTTACGTCGATATGAATGGTAAGTAAAAAACACCTCCCCGGTTCCTTGT GACCGCCGCACCTACCCTCTCAAAGTCCACCTGCTTCTTACAATTCCTGA CCTTGATGTACCCGCTACAGGTATCATTCACCCATGCGCGCATCCAGAGG ACCGGCCCGCGCCGGAATCGGAGGAGGAAATGTATGCGAACGTGATGGAA TACGTCGACCGTCTCTTCGCGGCCGTGCGGCCGCGGAAGCTTCTTTTCAT GGCCATTGACGGCGTCGCGCCGCGCGCTAAGATGAACCAGCAGCGCGCAC GACGATTTCGGGCCGCCGAGGAGGTGAGTGTTATCTCAAAGTTAACACCC TTTATATTCGCAGCCAGCGTTGGACTGTAACAATTCTCCCGGCTACAGCC GCGTAAAGTAATTGTCAAGTAGCCACCTTGCTATTTAATGGTTTTGTTAA TAGGCTGTTTTCCTGTGCTGTTCTGGTCCACTGTCCTGCCAAGAGTTTTT ATATTGCCTCACCTTCCCGCGGGTTACAGTGATGAGGCATGACTCATTGT GCATGGCACCCATGTCATTATACCATGCTCGCGTCCCGGACTTGTTTGCC CTCATTCCCGCTCTGCACGGGGGGCAGGCCGAGGAGCGCAAGGAGCTAAT GGAGGAGACGCGGCAGGAGATGATCGCGCTGGGCCACCGGGTGCCGCCGC CCGCGTCTGCCGCCTGGGACAGCAACGTCATCACTCCGGGGACGTCCTTC ATGCACCGCCTGAGCGAGTTCCTTCGCTTCTACGTCCAGGACCGCGTCAA CCGCGACCGCGCCTGGCGAGACATCACCGTGATCCTCTCTGACGCGAACG AGCCCGGGGAGGTGAGTCCTTCTCTCTTTTCTTATTTCACCGTTTCTTTA TGCTCCCGTCTGTTGCTGCCGTTTGGCAATTTCAGTTTGCTCTGCAGTTT TTTTAGCTGCTCTGAGGCGGGGAACGTGTCCTCTTCTCGTTTTCAAGCTG GTGTCTGGATTTGACTATAGAGTTCTGCGTATTGCTGCACCCGTCGCGCG ACTCTGGGCGAGTGACGAAGAAATCAATCTCTGTGGCAAGTGTTGAACCA TTCTGCTATTCATCTCAATTGAAAATCGATACACAGGGAGAGCACAAGAT AATGGACTTTGTACGGCGGCAGCGGACGGCGATGGGGTATGACCCCAACA CGCAGCACGTGCTGCACGGCCTCGACGCCGACCTCATCATGCTCGGCCTC GCCACACACGAGCCACGCTTCACCATCCTTCGCGAGCAGGTTCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11931:202..1646-

>mRNA_P-wetherbeei_contig11931.1.1 ID=mRNA_P-wetherbeei_contig11931.1.1|Name=mRNA_P-wetherbeei_contig11931.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig11931:202..1646- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCGTCCCCGCGTTCTACCGATGGCTGAGCGAGAAGTACCCCAAAAT
CGTGGTTGACCTAATCGAGGAAAAGAAGCGCTATGTCGACGGCACGCCGC
TTCCCATGGACTTGTCGCGTCCAAATCCCAACGGAATAGAGTTCGACAAC
CTTTACGTCGATATGAATGGTATCATTCACCCATGCGCGCATCCAGAGGA
CCGGCCCGCGCCGGAATCGGAGGAGGAAATGTATGCGAACGTGATGGAAT
ACGTCGACCGTCTCTTCGCGGCCGTGCGGCCGCGGAAGCTTCTTTTCATG
GCCATTGACGGCGTCGCGCCGCGCGCTAAGATGAACCAGCAGCGCGCACG
ACGATTTCGGGCCGCCGAGGAGGTGAGTGAGCGCAAGGAGCTAATGGAGG
AGACGCGGCAGGAGATGATCGCGCTGGGCCACCGGGTGCCGCCGCCCGCG
TCTGCCGCCTGGGACAGCAACGTCATCACTCCGGGGACGTCCTTCATGCA
CCGCCTGAGCGAGTTCCTTCGCTTCTACGTCCAGGACCGCGTCAACCGCG
ACCGCGCCTGGCGAGACATCACCGTGATCCTCTCTGACGCGAACGAGCCC
GGGGAGGGAGAGCACAAGATAATGGACTTTGTACGGCGGCAGCGGACGGC
GATGGGGTATGACCCCAACACGCAGCACGTGCTGCACGGCCTCGACGCCG
ACCTCATCATGCTCGGCCTCGCCACACACGAGCCACGCTTCACCATCCTT
CGCGAGCAGGTTCTT
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