mRNA_P-wetherbeei_contig11928.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11928.1.3
Unique NamemRNA_P-wetherbeei_contig11928.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: D7FWM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWM0_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.050e-52
Identity = 120/263 (45.63%), Postives = 153/263 (58.17%), Query Frame = 1
Query:   76 ALCDLVGRLLSAATAD-----DSH----PFEFPAFGQYVFERNTVMIEMDQHAANLPLRLVAS-----------------VSAKHGCSTDASGAM------ALMRNVF--ANLDAEDARAHIHSVEDQQ---ATVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRA 753
            ALCD + R L AA A       SH     ++  A GQ+V E N   +     A ++   ++ +                      G   + +  +      AL+ +V     LDA  ARAH+ SVEDQ+     V A+ GVAFVADG +LPR GG+DD PM      VPF SP SL   FR+PH G V GM++P GVT+IVGGG+HGK+TLL+ALAVG+YDKVPGDGRE AV DP AV++R+EDGRPV+ VDISPF+  LP A
Sbjct:  110 ALCDFLARRLHAAIAAASPAASSHGIRSDYDSEAVGQFVLETNRAAVSAATGAVSVVFEVLPARGXXXXXXXXXXXXXXXXXQDRGRGAEMAEVLRGIVKQALLGSVHPGGGLDAAAARAHVESVEDQRHLRRLVAASDGVAFVADGCVLPRRGGSDDRPMEISRGAVPFRSPESLRGEFRLPHRGVVKGMLVPRGVTVIVGGGYHGKSTLLRALAVGVYDKVPGDGRELAVADPGAVTIRAEDGRPVSAVDISPFISSLPSA 372          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A6H5L3G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G2_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.200e-51
Identity = 124/263 (47.15%), Postives = 152/263 (57.79%), Query Frame = 1
Query:   76 ALCDLVGRLLSAATAD-----DSH----PFEFPAFGQYVFERNTVMIEMDQHAAN-----LPLRLVASVSAKHGCSTDAS-------GA-----------MALMRNVF--ANLDAEDARAHIHSVEDQQ---ATVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRA 753
            ALCD + R L AA A       SH     ++  A GQ+V E N   +     A +     LP R          C            GA            AL+ +V     LDA  ARAH+ SVEDQ+     V A+ GVAFVADG +LPR GG+DD PM      VPF SP SL + FR+PH G V GM++P GVT+IVGGG+HGK+TLL+ALA+G+YDKVPGDGRE AV DP AV++R+EDGRPV+ VDISPF+  LP A
Sbjct:  123 ALCDFLARRLHAAIAAASPAASSHGIRSDYDSEAVGQFVLETNRAAVSAATGAVSVVFEVLPARGXXXXXXXXXCGXAQEQQQDRGRGAEMAEVLRGIVKQALLGSVHPGGGLDAAAARAHVESVEDQRHLRRLVAASDGVAFVADGCVLPRRGGSDDRPMEISRGAVPFHSPESLRREFRLPHRGVVKGMLVPRGVTVIVGGGYHGKSTLLRALAMGVYDKVPGDGRELAVADPGAVTIRAEDGRPVSSVDISPFISSLPSA 385          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A2H3JET0_WOLCO (Uncharacterized protein n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JET0_WOLCO)

HSP 1 Score: 181 bits (458), Expect = 1.630e-48
Identity = 117/278 (42.09%), Postives = 155/278 (55.76%), Query Frame = 1
Query:    7 RVSVPWSIGILPGELCATRTRRTALCDLVGRLL--SAATADDSHPF------------EFPAF--GQYVFERNTVMIEMDQHA--ANLPLRLVA---SVSAKHGCSTDASGAMALMRNVFANLDAEDARAHIHSVEDQQA---TVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRAGCTSS 768
            R+ VP +   LP  L A RTR+ ALCD + R L  +A     +H              E  A   GQ V ER+ V+++    A  A   +   A   ++  +       +   AL R +  +   E   A + SVEDQ+     V  AG VAFVADGA+LPRA G  D PMR P  VVPF +PP+L + F +PH G++ GM +P G+T++ GGGFHGK+TLL ALAVG Y  VPGDGREF V   + VSV+ EDGR +  VDISPF+ +LP    T++
Sbjct:   96 RIRVPQAAAQLPPSLFANRTRQVALCDFLARRLHDAAVALSKAHGAQKSRRWAGAKGGELTADRPGQQVLERSAVVLDASDGALEARFTVGFPAQGRTILGEWAAEIFRASVPALARTLLYDAHKESVHAFVDSVEDQECLRRAVTEAGLVAFVADGAVLPRASGASDAPMRGPH-VVPFRAPPALARTFALPHRGSIAGMGIPVGITMVAGGGFHGKSTLLDALAVGCYSHVPGDGREFVVTSEKCVSVQGEDGRSIQCVDISPFIHDLPGGASTAA 372          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: UPI001C8559E3 (ABC-ATPase domain-containing protein n=1 Tax=Desulfuromonas versatilis TaxID=2802975 RepID=UPI001C8559E3)

HSP 1 Score: 177 bits (448), Expect = 1.920e-47
Identity = 119/254 (46.85%), Postives = 144/254 (56.69%), Query Frame = 1
Query:   37 LPGELCATRTRRTALCDLVGRLLSAATAD---------DSHPFEFPAFGQYVFERNTVMIEMDQHAANLPLRLVASVSAKHGCSTDASGAMALMRNV-----FANLDAEDARAHIHSVEDQQAT---VVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELP 747
            LP EL AT  RR AL D +GR ++AA             S        GQ V  RN V+I      A L L L A+     G   +      L   V     + +LDA+ AR H+ SVEDQQA    +   G VAFVADGAILPR  G DD P+  P   +PF +P SL +   +P+AG V GM +PAGVTLIVGGGFHGK+TLL AL  G+YD +PGDGRE    DP AV +R+EDGR V  V+ISPF+  LP
Sbjct:   60 LPPELFATPVRRIALEDFLGRAVAAAIRQCVRGRRGIGKSGEMAIATSGQQVLVRNAVLIAEGAVEARLTLGLPAAGRTIRGRDAEEMLFRELPEVVRRALFYPSLDADKARRHVESVEDQQALRDQLAKQGLVAFVADGAILPRRSGIDDRPL--PQDAIPFRAPESLARTLVLPNAGEVRGMAIPAGVTLIVGGGFHGKSTLLHALERGVYDHIPGDGRERVASDPAAVKIRAEDGRSVWDVNISPFIDNLP 311          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A165B0W9_9APHY (Uncharacterized protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165B0W9_9APHY)

HSP 1 Score: 178 bits (451), Expect = 3.300e-47
Identity = 119/282 (42.20%), Postives = 152/282 (53.90%), Query Frame = 1
Query:    7 RVSVPWSIGILPGELCATRTRRTALCDLVGRLLSAATADDSH--------------PFEFPAFGQYVFERNTVMIEMDQHAANLPLRLVASVSAKHGCSTDASGAMALMRNVFANL-----------DAEDARAHIHSVEDQ---QATVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRAGCTSS 768
            R  V  ++   P +L A R RR ALCD + R L A+ A  S                      GQ V ER++V+++ D   A   + L A      G +     A  + RN    L           D ++ R  +  VEDQ   +A + +AG VAFVA+ AILPRA G  D PM  P AV PF SPP+L + F +PH G V GM +PAGVT+I GGGFHGK+TLL ALAVG Y+ + GDGREF V   R VSV+ EDGRP+  VDISPF+  LP    T++
Sbjct:  141 RARVKHAVAKFPPDLYANRIRRIALCDFLTRKLHASAAQLSKNSRSSKNWSAAKGGEIAVDTPGQEVLERSSVILDDDGIEARFTVGLPAQ-----GRTILGDWAADIFRNAIPTLARSLLYTTDSTDTDELREFVDCVEDQDALRALIRSAGLVAFVANDAILPRASGASDAPMHTPPAV-PFQSPPNLERTFTLPHRGTVRGMAVPAGVTMIAGGGFHGKSTLLDALAVGCYNHISGDGREFVVTSDRCVSVQGEDGRPIICVDISPFINNLPGGASTTA 416          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A3M1SS66_9CYAN (ATPase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A3M1SS66_9CYAN)

HSP 1 Score: 176 bits (446), Expect = 4.140e-47
Identity = 112/276 (40.58%), Postives = 155/276 (56.16%), Query Frame = 1
Query:    1 RWRVSVPWSIGILPGELCATRTRRTALCDLVGRLLSAATADDSHP--------FEFPAFGQYVFERNTVMIEMDQHAANLPLRLVASVSAKHGCSTDASGAMALMRNV---------FANLDAEDARAHIHSVEDQ---QATVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRAGCTSS 768
            R RV VP S+   P EL  +R+R  AL D + R  +AA  + SH             + GQ V ER++ ++      A + +R V  + A+         A  L  +V         F  LD  +   H+ +VED    +  +   G VAFVADG+ILPR    DD P+      VPF SPPSL   F  P+ G + GM +PAG+TLIVGGG+HGK+TLL+A+ +G+Y+++PGDG+EF V  P AV +R+EDGR VAGVDISPF+  LP+   T++
Sbjct:   51 RLRVRVPQSVAGFPAELYRSRSRSIALRDYLTRQFAAACREVSHKRGTGKSGAMGVCSMGQEVLERSSALVS----DAEIEVRFVVGLPAQGRRILGRQAAQMLCEDVPQIVDRALKFDRLDGAEIARHVETVEDADWLRDRLEVLGLVAFVADGSILPRRSSVDDRPLS--ADAVPFESPPSLRVEFDCPNRGKISGMGIPAGITLIVGGGYHGKSTLLRAIELGVYNRIPGDGQEFVVAHPAAVKIRAEDGRHVAGVDISPFINNLPQGRSTTA 320          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A813M1N9_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813M1N9_POLGL)

HSP 1 Score: 169 bits (429), Expect = 7.680e-46
Identity = 111/257 (43.19%), Postives = 146/257 (56.81%), Query Frame = 1
Query:   58 TRTRRTALCDLVGRLLS------AAT------------ADDSHPFEFPAFGQYVFERNTVMIEMDQHAANLPLRLVASVSAKHG--CSTDASGAMALMRNV--FANLDAEDARAHIHSVEDQQAT---VVAAGGVAFVADGAILPRAGGTDDGPMRQPGA--VVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELP 747
            +R R TALCD V R+L+      A T            +      +  A GQYV ER +V+   +   A L L L A   +  G   +    G    ++    +++LD    R HI +VEDQ A    +   G VAFV +GAILPR  G DD PM +  +  +V F SP +     ++PHAG V GM +  GVT+IVGGGFHGK+TLL+AL +G+Y+KVPGDGREF VC+PRAV +R+EDGR V   DISPF+  LP
Sbjct:    9 SRVRNTALCDYVTRVLADLLHGGAGTDWTQTVQGAGWSSSKGGDIQVDAPGQYVIERTSVVANAEFIEARLTLALPAKGRSIEGYRAAEIVGGLCDAVKGALFYSSLDGTSLRGHIETVEDQDALRNQLCELGLVAFVGNGAILPRKSGVDDRPMTKADSPNLVDFKSPAAFEVTIKLPHAGQVTGMAIKKGVTVIVGGGFHGKSTLLQALQLGIYNKVPGDGREFVVCEPRAVKIRAEDGRSVRCTDISPFINNLP 265          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: UPI001F608512 (ABC-ATPase domain-containing protein n=3 Tax=Microcoleus TaxID=44471 RepID=UPI001F608512)

HSP 1 Score: 173 bits (439), Expect = 8.230e-46
Identity = 112/280 (40.00%), Postives = 153/280 (54.64%), Query Frame = 1
Query:    1 RWRVSVPWSIGILPGELCATRTRRTALCDLVGRLLSAAT--------ADDSHPFEFPAFGQYVFERNTVMIEMDQHAA-----NLPLRLVASVSAKHGCSTDASGAMALMRNV---------FANLDAEDARAHIHSVEDQ---QATVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRAGCTS 765
            ++RV VP +I  +PGEL  +R+R  AL D + R    A            S       FGQ V ER +  I     +       + LR    + A          A  L  N+         +ANL+A + R H+ +VED    +  +   G  AFVADG+ILPR  G D+ P+      V F SPPSL   F  P+ G + GM +PAG+TLIVGGG+HGK+TLL+A+ +G+Y+++PGDGREF V +P AV +R+EDGR VAGVDISPF+  LP+   T+
Sbjct:   51 KFRVRVPPNIAQIPGELFNSRSREIALRDYLTRQFDTAAHSISSKRGTGKSGMIAVTGFGQEVLERTSAFIISSARSGIEDLGGVELRFAVGLPAGGRSILGRQAAEMLCENIPEIVSQSLKYANLNAAECRRHVETVEDADWLRQQLAENGLFAFVADGSILPRRTGVDNRPLLN--NAVAFQSPPSLKVEFNCPNRGLISGMGIPAGITLIVGGGYHGKSTLLRAIELGVYNRIPGDGREFVVTNPAAVKIRAEDGRSVAGVDISPFINHLPQGRDTA 328          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A7X6HS60_9CYAN (ABC-ATPase domain-containing protein n=1 Tax=Microcoleus sp. SU_5_6 TaxID=2720483 RepID=A0A7X6HS60_9CYAN)

HSP 1 Score: 173 bits (439), Expect = 8.650e-46
Identity = 112/280 (40.00%), Postives = 153/280 (54.64%), Query Frame = 1
Query:    1 RWRVSVPWSIGILPGELCATRTRRTALCDLVGRLLSAAT--------ADDSHPFEFPAFGQYVFERNTVMIEMD-----QHAANLPLRLVASVSAKHGCSTDASGAMALMRNV---------FANLDAEDARAHIHSVEDQQ---ATVVAAGGVAFVADGAILPRAGGTDDGPMRQPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPRAGCTS 765
            ++RV VP +I  +P EL  +R+R  AL D + R    A            S       FGQ V ER +  I        +    + LR    + A          A  L  ++         +ANL+A + R H+ +VED +     +   G VAFV DG+ILPR  G DD P+     V  F SPPSL   F  P+ G + GM +PAG+TLIVGGG+HGK+TLL+A+ +G+Y+++PGDGREF V +P AV +R+EDGR VAGVDISPF+  LP+A  T+
Sbjct:   51 KFRVRVPPNIAQIPRELFHSRSREIALRDYLTRSFDKAAYKISSKRGTGKSGLIAVTRFGQEVLERTSAFIIFSNTSDREDLGGVELRFTVGLPAGGRSILGRQAAEMLCEDIPRIVSQSLKYANLNAAECRRHVETVEDAEWLREQLAETGLVAFVTDGSILPRRTGADDRPLLHDAVV--FQSPPSLKVEFNCPNRGLISGMGIPAGITLIVGGGYHGKSTLLRAIELGVYNRIPGDGREFVVTNPAAVKIRAEDGRSVAGVDISPFINHLPQARDTA 328          
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Match: A0A812KUI8_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812KUI8_9DINO)

HSP 1 Score: 169 bits (427), Expect = 9.540e-46
Identity = 113/263 (42.97%), Postives = 150/263 (57.03%), Query Frame = 1
Query:   40 PGELCATRTRRTALCDLVGRLLSAA------------------TADDSHPFEFPAFGQYVFERNTVMIEMDQHAANLPLRLVASVSAKHGC-STDASGAM--ALMRNVF-ANLDAEDARAHIHSVEDQQAT---VVAAGGVAFVADGAILPRAGGTDDGPMRQPGA--VVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLLKALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELP 747
            P  +  +R R TALCD V R+LS                    +       +    GQYV ER++V+ + +   A + L L A   +  G  + D  G +  A+  ++F  +LDA   ++HI +VEDQ A    +   G VAFV +GAILPR  G DD PM    +  +V F SP S+     +PHAG V GM +  GVTLIVGGGFHGK+TLL+AL +G+Y+KVPGDGRE  VCDP+AV +R+EDGR V   DISPF+  LP
Sbjct:    8 PAYVTESRIRNTALCDFVTRVLSDRLRGGGGTDWTQVVQGGGWSGSKGGDLQIDTPGQYVLERSSVVAKAEFIEARVTLALPARGRSIEGYRAADIVGGLCEAVEGSLFYKSLDAAALQSHIEAVEDQDALRKQLSGLGLVAFVGNGAILPRKSGVDDRPMTTKDSPNLVTFESPTSMEVTVSLPHAGDVTGMGIQKGVTLIVGGGFHGKSTLLQALQLGIYNKVPGDGREHVVCDPQAVKIRAEDGRSVKSADISPFINNLP 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11928.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWM0_ECTSI2.050e-5245.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3G2_9PHAE3.200e-5147.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2H3JET0_WOLCO1.630e-4842.09Uncharacterized protein n=1 Tax=Wolfiporia cocos (... [more]
UPI001C8559E31.920e-4746.85ABC-ATPase domain-containing protein n=1 Tax=Desul... [more]
A0A165B0W9_9APHY3.300e-4742.20Uncharacterized protein n=1 Tax=Laetiporus sulphur... [more]
A0A3M1SS66_9CYAN4.140e-4740.58ATPase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A3... [more]
A0A813M1N9_POLGL7.680e-4643.19Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
UPI001F6085128.230e-4640.00ABC-ATPase domain-containing protein n=3 Tax=Micro... [more]
A0A7X6HS60_9CYAN8.650e-4640.00ABC-ATPase domain-containing protein n=1 Tax=Micro... [more]
A0A812KUI8_9DINO9.540e-4642.97Hypothetical protein n=3 Tax=Symbiodinium TaxID=29... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11928contigP-wetherbeei_contig11928:6..1509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWM0
PFAMsABC_ATPase
Model size957
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.36e-53
EggNOG OGsCOG3044@1|root,2QT9W@2759|Eukaryota
DescriptionPredicted ATPase of the ABC class
Cds size957
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.8578386-CDS-P-wetherbeei_contig11928:5..1401683185931.8578386-CDS-P-wetherbeei_contig11928:5..140Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11928 6..140 -
1683185931.868849-CDS-P-wetherbeei_contig11928:160..3991683185931.868849-CDS-P-wetherbeei_contig11928:160..399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11928 161..399 -
1683185931.8785188-CDS-P-wetherbeei_contig11928:770..9891683185931.8785188-CDS-P-wetherbeei_contig11928:770..989Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11928 771..989 -
1683185931.886925-CDS-P-wetherbeei_contig11928:1145..15091683185931.886925-CDS-P-wetherbeei_contig11928:1145..1509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11928 1146..1509 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11928.1.3prot_P-wetherbeei_contig11928.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11928 6..1509 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11928.1.3

>prot_P-wetherbeei_contig11928.1.3 ID=prot_P-wetherbeei_contig11928.1.3|Name=mRNA_P-wetherbeei_contig11928.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
RWRVSVPWSIGILPGELCATRTRRTALCDLVGRLLSAATADDSHPFEFPA
FGQYVFERNTVMIEMDQHAANLPLRLVASVSAKHGCSTDASGAMALMRNV
FANLDAEDARAHIHSVEDQQATVVAAGGVAFVADGAILPRAGGTDDGPMR
QPGAVVPFVSPPSLHKVFRVPHAGAVGGMMLPAGVTLIVGGGFHGKTTLL
KALAVGMYDKVPGDGREFAVCDPRAVSVRSEDGRPVAGVDISPFVKELPR
AGCTSSTAAATAATAAAVALCADAATRGGGGGGAAGRDGGGSGDDGIRGG
GKRKSDRRGGSGSDGGGDG
back to top

mRNA from alignment at P-wetherbeei_contig11928:6..1509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11928.1.3 ID=mRNA_P-wetherbeei_contig11928.1.3|Name=mRNA_P-wetherbeei_contig11928.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1504bp|location=Sequence derived from alignment at P-wetherbeei_contig11928:6..1509- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGGCGCGTGTCCGTGCCGTGGAGCATCGGCATCCTTCCCGGAGAGCT TTGCGCGACGCGGACGCGCCGCACCGCGCTTTGCGACCTTGTGGGACGAT TGCTGTCGGCAGCGACCGCCGATGACTCGCACCCGTTCGAGTTTCCGGCT TTCGGTCAATATGTCTTTGAGCGAAACACGGTCATGATTGAGATGGATCA GCATGCGGCGAACCTCCCACTGCGGCTCGTGGCGTCCGTCAGCGCCAAGC ACGGCTGCAGCACCGACGCGTCCGGGGCGATGGCGCTCATGAGGAATGTC TTTGCTAACCTTGATGCGGAGGACGCAAGAGCGCACATCCACAGCGTTGA AGACCAGCAGGCGAGTAGATCCGGATCATTACACTTCCTTGTTTTGACAG AAGCCAAAATTTTTCGATTGAGGTTGCAACACCTTCGTTTCTCATTGAAC GCTTCAGAAATGCATTCCGCTCCTACCGCGCTTTCTCTGTCGACTTCTTC ACGTTAGGCGCTACGATCAGCCGTCGTGGCGGCTGGCGGCGTGGCCTTCG TGGCGGACGGCGCGATTTTGCCGCGCGCCGGCGGCACAGACGATGGCCCG ATGCGGCAGCCTGGCGCCGTCGTACCGTTCGTGTCTCCACCATCGCTGCA CAAGGTCTTCCGCGTGCCGCACGCCGGCGCCGTCGGCGGCATGATGCTGC CGGCCGGCGTGACGCTTATCGTCGGCGGCGGGTTCCACGGTGAGGACAAG GGGTAGAAGGTCCAGAAGAGGCTCTTGTTATAAGCGGTGGGAGAGCGGTC CAGTTTCTTGCTGTTGCTGCCGCCTGCTGCCAAAGTGCCGATGCTCTTCC AATAGTATGTTCTAAGCGTCGGATTCCCTCGTTTGCCGCAACGCCGTCCT TTAGAGCCTGGATAGTGGCAATGAAACCACCGAACCGCTCCAGTTGGGAA CGATTGCACGAAATTTCCATCTCACAGTTCTACCCTTTGATTGCCACGGT CTTCCCCTGGAAAGTCAACGTGTATACAGCTGTAGTTTAACTTAGGTGCT GGAAACTGAAATTGATTTCTAGCCGCAAACCCTGGTGTCAAAACGGTCGG CCGACCACAGGCAAAACGACGCTACTGAAGGCGCTTGCTGTGGGCATGTA CGACAAGGTGCCCGGCGACGGCCGGGAGTTCGCCGTCTGCGACCCGCGGG CCGTTTCTGTCCGGTCCGAGGACGGTCGCCCCGTTGCCGGCGTCGACATT TCGCCCTTTGTGAAGGAGCTGCCGCGAGCCGGCTGCACGAGTAGCACGGC GGCGGCAACGGCGGCGACGGCAGCGGCTGTGGCGCTATGCGCGGACGCGG TAGAATGGAAGGCGGCGAGGCAACGAGAGGAGGTGGTGGAGGCGGGGCCG CTGGCCGAGACGGCGGCGGGAGCGGCGATGACGGAATTAGGGGAGGTGGC AAGAGGAAGTCTGACCGCCGCGGCGGCAGCGGGAGTGATGGCGGCGGCGA TGGT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11928:6..1509-

>mRNA_P-wetherbeei_contig11928.1.3 ID=mRNA_P-wetherbeei_contig11928.1.3|Name=mRNA_P-wetherbeei_contig11928.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig11928:6..1509- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGGCGCGTGTCCGTGCCGTGGAGCATCGGCATCCTTCCCGGAGAGCT
TTGCGCGACGCGGACGCGCCGCACCGCGCTTTGCGACCTTGTGGGACGAT
TGCTGTCGGCAGCGACCGCCGATGACTCGCACCCGTTCGAGTTTCCGGCT
TTCGGTCAATATGTCTTTGAGCGAAACACGGTCATGATTGAGATGGATCA
GCATGCGGCGAACCTCCCACTGCGGCTCGTGGCGTCCGTCAGCGCCAAGC
ACGGCTGCAGCACCGACGCGTCCGGGGCGATGGCGCTCATGAGGAATGTC
TTTGCTAACCTTGATGCGGAGGACGCAAGAGCGCACATCCACAGCGTTGA
AGACCAGCAGGCGACCGTCGTGGCGGCTGGCGGCGTGGCCTTCGTGGCGG
ACGGCGCGATTTTGCCGCGCGCCGGCGGCACAGACGATGGCCCGATGCGG
CAGCCTGGCGCCGTCGTACCGTTCGTGTCTCCACCATCGCTGCACAAGGT
CTTCCGCGTGCCGCACGCCGGCGCCGTCGGCGGCATGATGCTGCCGGCCG
GCGTGACGCTTATCGTCGGCGGCGGGTTCCACGGCAAAACGACGCTACTG
AAGGCGCTTGCTGTGGGCATGTACGACAAGGTGCCCGGCGACGGCCGGGA
GTTCGCCGTCTGCGACCCGCGGGCCGTTTCTGTCCGGTCCGAGGACGGTC
GCCCCGTTGCCGGCGTCGACATTTCGCCCTTTGTGAAGGAGCTGCCGCGA
GCCGGCTGCACGAGTAGCACGGCGGCGGCAACGGCGGCGACGGCAGCGGC
TGTGGCGCTATGCGCGGACGCGGCAACGAGAGGAGGTGGTGGAGGCGGGG
CCGCTGGCCGAGACGGCGGCGGGAGCGGCGATGACGGAATTAGGGGAGGT
GGCAAGAGGAAGTCTGACCGCCGCGGCGGCAGCGGGAGTGATGGCGGCGG
CGATGGT
back to top