mRNA_P-wetherbeei_contig11913.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11913.1.2
Unique NamemRNA_P-wetherbeei_contig11913.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11913.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11913contigP-wetherbeei_contig11913:2..2073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1910
Hectar predicted targeting categoryother localisation
Exons2
Cds size1125
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.2320406-UTR-P-wetherbeei_contig11913:1..7861683185931.2320406-UTR-P-wetherbeei_contig11913:1..786Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11913 2..786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185931.241254-CDS-P-wetherbeei_contig11913:786..17251683185931.241254-CDS-P-wetherbeei_contig11913:786..1725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11913 787..1725 +
1683185931.2500572-CDS-P-wetherbeei_contig11913:1887..20731683185931.2500572-CDS-P-wetherbeei_contig11913:1887..2073Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11913 1888..2073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11913.1.2prot_P-wetherbeei_contig11913.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11913 787..2073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11913.1.2

>prot_P-wetherbeei_contig11913.1.2 ID=prot_P-wetherbeei_contig11913.1.2|Name=mRNA_P-wetherbeei_contig11913.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=375bp
MAALAIAARDNRMPPDLALQSPPFAISVGFLFPSPLLPAACRLPPPPGPP
AFPRKPADRCVRMKRPCGGEKPVCRRCQKASLENCHYSRQLRRPANHSRK
KRPSMAAAAAAAATAIERVTLSPSAAVGLGGAEHRFFRSFLAAFGSAIPF
GCTASNLVRVFLDASSCSPALGRSTNILGCSGGSAPADGIGVRDALGRGV
ALAVMAVGALISGDCKDVSYHAGLMLQANMYLQHVLLAPDLDDPPAVATA
AVGGAAADAADAAVGAAVVSGCVILSRGENATSAHLPTSALLCVVYILEG
FYHLASGRKALWEECLQHAVESYWAAWSDEHDRDPPALSASIAAASIGST
RAAAAALDVGHGTAAAATDAAHAAA
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mRNA from alignment at P-wetherbeei_contig11913:2..2073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11913.1.2 ID=mRNA_P-wetherbeei_contig11913.1.2|Name=mRNA_P-wetherbeei_contig11913.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2072bp|location=Sequence derived from alignment at P-wetherbeei_contig11913:2..2073+ (Phaeothamnion wetherbeei SAG_119_79)
TTATATGTCTATAGGAAGGGCGCGCGAACGTTTTTTTCGAGTTTTTCAAA
GGTCTCAGGGGGGTTAAGGCGGAACAAACCTAGACCGCCCCTACAGGAAT
AGTTGTACCCCCTAATCGGCAGCCGTTACGATTTGCCTAATTTTCTTTGC
GCAAACACCCACCAGCTACCCCTTTTGCCAAATCCGCTTTCTATCTCGCG
CCCCCCGGGCGGTGGCGTTCCCTCTCTCTCGTTGTCGTGCCTGCTCCACA
AAGAAAAAATTAGTTAATCTTACAAAAGGAAAGATGAAAGATGTCCGACG
TGAGTTTTGGACACTTCATTGCGGGACCACGCGGCAAATGCTATAGCTGG
ATGAGAGAAGTGTAGATCGACTAGCAGCCTGCCGTGCTCCCCGACAAGCC
CCCCCCCCCCAAAACTTCCTCCTTTGATTCTCCGAAGGACGTCGGCATAC
ATGGGGATTGTTTTAATATAAAAGTATTACAAACCCTCTTTGCCGCGGTT
TCCCTCTTTCGAGTTCAACAGTATGAAGGAGATGGTCTTCATCCGACTGT
CATGTGGTGAGTCGTGGATCTTCAAACAAGAGCTCCTCCTCTCACACTCG
GGCAGTCGTGAATGTTGTTGAAGCGTATGCGTTCTCGGACGTTTGAGCAA
TCAGCACCCCAAAACAAAGCGTAAAACCTCTGGAACACATAAGATGCTGG
TTTCCAACAGTCTTCGCCGGCCAAGCGAACCGTCGCCTGCTCGGAGGGCT
GTTGTCAGGGTGGAGATAACGCAGTGTGCTATGAAATGGCCGCCTTGGCA
ATCGCTGCGAGAGACAACCGGATGCCCCCCGACCTTGCTCTCCAGTCCCC
TCCATTTGCCATTTCTGTTGGCTTCCTTTTCCCCTCGCCCCTGCTGCCTG
CCGCCTGCCGCCTGCCGCCGCCTCCCGGGCCGCCCGCCTTCCCACGAAAA
CCCGCAGACCGCTGCGTTCGAATGAAGCGTCCTTGCGGCGGTGAGAAGCC
GGTCTGCCGGCGATGTCAGAAGGCCTCCTTGGAGAACTGCCACTACTCGC
GGCAGCTCCGCCGGCCGGCGAACCACTCGAGAAAAAAGCGGCCGTCGATG
GCTGCGGCGGCGGCCGCGGCTGCCACGGCTATCGAGCGCGTGACACTGTC
GCCGTCGGCGGCGGTCGGCCTAGGCGGCGCGGAGCACCGCTTCTTCCGCT
CGTTCCTCGCCGCCTTCGGGAGCGCCATCCCCTTCGGATGCACGGCCAGC
AATCTCGTGCGCGTCTTTCTCGACGCTTCCAGTTGCTCTCCGGCTTTGGG
ACGCAGTACCAACATCCTCGGCTGCAGTGGTGGCTCCGCTCCTGCTGATG
GCATCGGCGTGCGGGACGCGCTCGGGCGAGGCGTGGCACTGGCTGTGATG
GCGGTTGGGGCGCTCATTTCGGGCGACTGCAAGGACGTGAGCTACCATGC
AGGCCTCATGCTCCAAGCCAACATGTATTTGCAGCACGTTCTGCTGGCGC
CAGACCTCGACGACCCCCCGGCCGTCGCCACCGCCGCCGTCGGTGGTGCC
GCCGCGGATGCTGCGGACGCCGCCGTCGGTGCCGCCGTTGTCTCTGGCTG
CGTCATATTGTCGAGAGGCGAAAATGCTACCTCCGCGCACCTGCCGACGA
GCGCGCTGCTTTGTGTCGTTTACATCCTCGAGGGGTTTTATCACCTGGCG
AGCGGGAGAAAAGCGCTGTGGGAGGTGAGAGCTCCGAAAAAAGACGAGAA
TGCTGCTCATGGCCTTCAGCCGCGCCACCTCACAAGTTTTTGCGGTCTGT
TTCCTTCTGCTAATTCCTCTCGCTCTGCTCGCGGCGCCCTCTGCGTGCTT
CGTTCTGCTATTAACGCTCGGTATTTGTTGCGGCAGGAATGCCTGCAGCA
CGCCGTTGAATCGTACTGGGCTGCATGGAGCGACGAGCACGACCGCGATC
CGCCCGCGTTGTCTGCTTCCATCGCGGCTGCTAGCATTGGCAGCACGAGG
GCAGCCGCTGCAGCTCTCGACGTCGGTCACGGCACCGCCGCCGCAGCTAC
CGACGCCGCTCACGCCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11913:2..2073+

>mRNA_P-wetherbeei_contig11913.1.2 ID=mRNA_P-wetherbeei_contig11913.1.2|Name=mRNA_P-wetherbeei_contig11913.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1125bp|location=Sequence derived from alignment at P-wetherbeei_contig11913:2..2073+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCTTGGCAATCGCTGCGAGAGACAACCGGATGCCCCCCGACCT
TGCTCTCCAGTCCCCTCCATTTGCCATTTCTGTTGGCTTCCTTTTCCCCT
CGCCCCTGCTGCCTGCCGCCTGCCGCCTGCCGCCGCCTCCCGGGCCGCCC
GCCTTCCCACGAAAACCCGCAGACCGCTGCGTTCGAATGAAGCGTCCTTG
CGGCGGTGAGAAGCCGGTCTGCCGGCGATGTCAGAAGGCCTCCTTGGAGA
ACTGCCACTACTCGCGGCAGCTCCGCCGGCCGGCGAACCACTCGAGAAAA
AAGCGGCCGTCGATGGCTGCGGCGGCGGCCGCGGCTGCCACGGCTATCGA
GCGCGTGACACTGTCGCCGTCGGCGGCGGTCGGCCTAGGCGGCGCGGAGC
ACCGCTTCTTCCGCTCGTTCCTCGCCGCCTTCGGGAGCGCCATCCCCTTC
GGATGCACGGCCAGCAATCTCGTGCGCGTCTTTCTCGACGCTTCCAGTTG
CTCTCCGGCTTTGGGACGCAGTACCAACATCCTCGGCTGCAGTGGTGGCT
CCGCTCCTGCTGATGGCATCGGCGTGCGGGACGCGCTCGGGCGAGGCGTG
GCACTGGCTGTGATGGCGGTTGGGGCGCTCATTTCGGGCGACTGCAAGGA
CGTGAGCTACCATGCAGGCCTCATGCTCCAAGCCAACATGTATTTGCAGC
ACGTTCTGCTGGCGCCAGACCTCGACGACCCCCCGGCCGTCGCCACCGCC
GCCGTCGGTGGTGCCGCCGCGGATGCTGCGGACGCCGCCGTCGGTGCCGC
CGTTGTCTCTGGCTGCGTCATATTGTCGAGAGGCGAAAATGCTACCTCCG
CGCACCTGCCGACGAGCGCGCTGCTTTGTGTCGTTTACATCCTCGAGGGG
TTTTATCACCTGGCGAGCGGGAGAAAAGCGCTGTGGGAGGAATGCCTGCA
GCACGCCGTTGAATCGTACTGGGCTGCATGGAGCGACGAGCACGACCGCG
ATCCGCCCGCGTTGTCTGCTTCCATCGCGGCTGCTAGCATTGGCAGCACG
AGGGCAGCCGCTGCAGCTCTCGACGTCGGTCACGGCACCGCCGCCGCAGC
TACCGACGCCGCTCACGCCGCCGCC
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