mRNA_P-wetherbeei_contig11900.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11900.2.1
Unique NamemRNA_P-wetherbeei_contig11900.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig11900.2.1 vs. uniprot
Match: A0A5C9EWY6_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A5C9EWY6_9ARCH)

HSP 1 Score: 77.0 bits (188), Expect = 2.920e-16
Identity = 47/100 (47.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    1 MAQITDAEAIRFANEVLRPLCEEARALAARCVALSTVWFGGINATF-AGATDTLEDGRAAQGVSRLTGADVTNAVAQLLGIDLN------AEIIQKPCVR 279
            M  IT+ +AI+F NE +RPL E+ RAL A   A    W GGI  T  + A D++ DGR A+G+SRLT ADV N V QL            A++I KPCVR
Sbjct:    1 MPDITNTQAIKFCNEQIRPLSEKFRALKAEVDATLVDWNGGIGTTIGSSADDSIADGREAEGISRLTAADVANLVTQLQAYQTQLDQAGVADVINKPCVR 100
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11900.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C9EWY6_9ARCH2.920e-1647.00Uncharacterized protein n=1 Tax=Candidatus Lokiarc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11900contigP-wetherbeei_contig11900:1676..1975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.8125458-CDS-P-wetherbeei_contig11900:1675..19751683185930.8125458-CDS-P-wetherbeei_contig11900:1675..1975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11900 1676..1975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11900.2.1prot_P-wetherbeei_contig11900.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11900 1676..1975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11900.2.1

>prot_P-wetherbeei_contig11900.2.1 ID=prot_P-wetherbeei_contig11900.2.1|Name=mRNA_P-wetherbeei_contig11900.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
MAQITDAEAIRFANEVLRPLCEEARALAARCVALSTVWFGGINATFAGAT
DTLEDGRAAQGVSRLTGADVTNAVAQLLGIDLNAEIIQKPCVRQVPEVN*
back to top

mRNA from alignment at P-wetherbeei_contig11900:1676..1975-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11900.2.1 ID=mRNA_P-wetherbeei_contig11900.2.1|Name=mRNA_P-wetherbeei_contig11900.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig11900:1676..1975- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACAGATCACTGACGCGGAAGCGATCCGGTTCGCGAACGAAGTCCT
CCGACCGCTGTGCGAAGAGGCACGGGCGCTGGCCGCACGCTGCGTGGCGC
TCTCGACCGTTTGGTTCGGGGGCATCAACGCGACGTTCGCGGGCGCAACG
GACACGTTGGAAGACGGGCGCGCGGCTCAAGGGGTGTCCCGCCTGACCGG
TGCGGACGTGACCAACGCGGTGGCCCAGCTCCTCGGTATCGACCTTAACG
CCGAGATCATTCAGAAACCGTGCGTGCGGCAGGTACCCGAAGTGAACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11900:1676..1975-

>mRNA_P-wetherbeei_contig11900.2.1 ID=mRNA_P-wetherbeei_contig11900.2.1|Name=mRNA_P-wetherbeei_contig11900.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig11900:1676..1975- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACAGATCACTGACGCGGAAGCGATCCGGTTCGCGAACGAAGTCCT
CCGACCGCTGTGCGAAGAGGCACGGGCGCTGGCCGCACGCTGCGTGGCGC
TCTCGACCGTTTGGTTCGGGGGCATCAACGCGACGTTCGCGGGCGCAACG
GACACGTTGGAAGACGGGCGCGCGGCTCAAGGGGTGTCCCGCCTGACCGG
TGCGGACGTGACCAACGCGGTGGCCCAGCTCCTCGGTATCGACCTTAACG
CCGAGATCATTCAGAAACCGTGCGTGCGGCAGGTACCCGAAGTGAACTGA
back to top