mRNA_P-wetherbeei_contig11896.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11896.3.1
Unique NamemRNA_P-wetherbeei_contig11896.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A351T3F1_9PROT (Ferredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A351T3F1_9PROT)

HSP 1 Score: 214 bits (546), Expect = 1.750e-70
Identity = 92/109 (84.40%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTYIVTEACIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPD E GHEK A +NR+YA +WPNIT+AGTPP+DAD+ KG EGKF+KYFS  PG
Sbjct:    1 MTYIVTEACIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDVEGGHEKMAEVNRDYAAKWPNITIAGTPPDDADEHKGEEGKFEKYFSENPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A3M1JSC4_9PROT (Ferredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JSC4_9PROT)

HSP 1 Score: 213 bits (541), Expect = 1.010e-69
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTY+VTEACIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTE G EK+  INREYA +WPNITV   PP DAD+FKGVEGKFDKYFS KPG
Sbjct:    1 MTYVVTEACIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTEDGLEKWLEINREYAAKWPNITVKREPPADADEFKGVEGKFDKYFSDKPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A5J6N651_9PROT (Ferredoxin n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6N651_9PROT)

HSP 1 Score: 200 bits (508), Expect = 1.060e-64
Identity = 86/108 (79.63%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKP 324
            MTY+VTEACI+CK+MDCVEVCPVDCFY GENMLVIHPDECIDCGVCEPECPA+AI+PDTE G EK+  +NR+YA QWPNIT  G  P DAD FKGV+GKFDKYFSP P
Sbjct:    1 MTYVVTEACIRCKYMDCVEVCPVDCFYAGENMLVIHPDECIDCGVCEPECPADAILPDTEQGLEKWIELNRQYAEQWPNITRKGEAPADADQFKGVDGKFDKYFSPNP 108
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A5C7JRX8_9SPHN (Ferredoxin n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A5C7JRX8_9SPHN)

HSP 1 Score: 199 bits (506), Expect = 2.140e-64
Identity = 86/109 (78.90%), Postives = 97/109 (88.99%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTY+VTEACIKCK+MDCVEVCPVDCFYEGENMLVI+P+ECIDCGVCEPECPAEAI+PDTE G EK+  +N +YA  WPNIT  G  P+DADDFKGV+GKFDKYFS +PG
Sbjct:    1 MTYVVTEACIKCKYMDCVEVCPVDCFYEGENMLVINPNECIDCGVCEPECPAEAILPDTEPGLEKWQELNAQYAALWPNITEKGPTPDDADDFKGVDGKFDKYFSAEPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A1X7Q170_9HYPH (Ferredoxin n=1 Tax=Mesorhizobium australicum TaxID=536018 RepID=A0A1X7Q170_9HYPH)

HSP 1 Score: 198 bits (503), Expect = 6.340e-64
Identity = 85/109 (77.98%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTY+VT+ CIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPA+AI PDTE G +K+  IN EYA  WPNIT  G PP+DA +F GVEGKF+KYFSP+PG
Sbjct:    1 MTYVVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIRPDTEPGLDKWLKINTEYASSWPNITQKGEPPDDAKEFDGVEGKFEKYFSPEPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A7Y8SZ15_9PROT (Ferredoxin n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y8SZ15_9PROT)

HSP 1 Score: 196 bits (498), Expect = 3.670e-63
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTY+V EACIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAI PDTE G EK+ ++N+EYA QWPNIT  G PP DA  + GV+ KF K+FSPKPG
Sbjct:    1 MTYVVMEACIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIKPDTEPGLEKWLSLNKEYAAQWPNITAKGEPPADAKSWDGVKDKFAKHFSPKPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A2E6QGW6_9PROT (Ferredoxin n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QGW6_9PROT)

HSP 1 Score: 196 bits (497), Expect = 5.050e-63
Identity = 83/109 (76.15%), Postives = 96/109 (88.07%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTY+VTEACIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAI+PD+E+  +K+  +N +YA +WPNIT  G PP DAD+FK V GKF+KYFS +PG
Sbjct:    1 MTYVVTEACIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAILPDSESNLDKWLEVNAKYAAEWPNITRKGEPPADADEFKDVPGKFEKYFSSEPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A6G6WPB5_9HYPH (Ferredoxin n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6G6WPB5_9HYPH)

HSP 1 Score: 196 bits (497), Expect = 5.220e-63
Identity = 86/109 (78.90%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTYIVTE CIKCK+MDCVEVCPVDCFYEG+NMLVIHPDECIDCGVCEPECPA+AI PDTE G EK+  +N EYA +WPNITV    P DA +F GVEGKFDKYFSP+PG
Sbjct:    1 MTYIVTENCIKCKYMDCVEVCPVDCFYEGDNMLVIHPDECIDCGVCEPECPADAIKPDTEPGLEKWLQLNTEYAPKWPNITVKRDAPPDAKEFDGVEGKFDKYFSPEPG 109
[Close]
BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: A0A8I1P3T6_9HYPH (Ferredoxin n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A8I1P3T6_9HYPH)

HSP 1 Score: 196 bits (497), Expect = 5.220e-63
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTY+VT+ CIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPA+AI PDTE G +K+  +N EYA QWPNIT    PPEDA ++ GVEGKF+KYFSP PG
Sbjct:    1 MTYLVTDNCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPADAIKPDTEPGLDKWLQVNTEYASQWPNITAKKEPPEDAKEWDGVEGKFEKYFSPTPG 109
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BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Match: UPI00096B6CE3 (ferredoxin family protein n=1 Tax=Salaquimonas pukyongi TaxID=2712698 RepID=UPI00096B6CE3)

HSP 1 Score: 196 bits (497), Expect = 5.220e-63
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:    1 MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKFDKYFSPKPG 327
            MTYIV + CIKCK+MDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAI+PDTE G +K+  +N EYA +WPNIT+    PEDA +F GVEGKF+KYFSP+PG
Sbjct:    1 MTYIVNDKCIKCKYMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPECPAEAILPDTEPGLDKWLQLNAEYAEKWPNITIKRESPEDAKEFDGVEGKFEKYFSPEPG 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11896.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351T3F1_9PROT1.750e-7084.40Ferredoxin n=1 Tax=Alphaproteobacteria bacterium T... [more]
A0A3M1JSC4_9PROT1.010e-6986.24Ferredoxin n=1 Tax=Alphaproteobacteria bacterium T... [more]
A0A5J6N651_9PROT1.060e-6479.63Ferredoxin n=2 Tax=Hypericibacter TaxID=2705399 Re... [more]
A0A5C7JRX8_9SPHN2.140e-6478.90Ferredoxin n=1 Tax=Sphingomonadales bacterium TaxI... [more]
A0A1X7Q170_9HYPH6.340e-6477.98Ferredoxin n=1 Tax=Mesorhizobium australicum TaxID... [more]
A0A7Y8SZ15_9PROT3.670e-6377.98Ferredoxin n=1 Tax=Alphaproteobacteria bacterium T... [more]
A0A2E6QGW6_9PROT5.050e-6376.15Ferredoxin n=1 Tax=Rhodospirillaceae bacterium Tax... [more]
A0A6G6WPB5_9HYPH5.220e-6378.90Ferredoxin n=3 Tax=Alphaproteobacteria TaxID=28211... [more]
A0A8I1P3T6_9HYPH5.220e-6377.06Ferredoxin n=1 Tax=Hyphomicrobiales bacterium TaxI... [more]
UPI00096B6CE35.220e-6377.06ferredoxin family protein n=1 Tax=Salaquimonas puk... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11896contigP-wetherbeei_contig11896:924..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1380394.JADL01000003_gene5159
Preferred namefdxA
PFAMsDUF3470,Fer4,Fer4_4
Model size333
Max annot lvl204441|Rhodospirillales
KEGG koko:K05524
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.49e-65
EggNOG OGsCOG1146@1|root,COG1146@2|Bacteria,1RH5I@1224|Proteobacteria,2U98K@28211|Alphaproteobacteria,2JSMY@204441|Rhodospirillales
DescriptionFerredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Cds size333
COG categoryC
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.3923476-CDS-P-wetherbeei_contig11896:923..12561683185930.3923476-CDS-P-wetherbeei_contig11896:923..1256Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11896 924..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11896.3.1prot_P-wetherbeei_contig11896.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11896 924..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11896.3.1

>prot_P-wetherbeei_contig11896.3.1 ID=prot_P-wetherbeei_contig11896.3.1|Name=mRNA_P-wetherbeei_contig11896.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MTYIVTEACIKCKFMDCVEVCPVDCFYEGENMLVIHPDECIDCGVCEPEC
PAEAIVPDTETGHEKFAAINREYALQWPNITVAGTPPEDADDFKGVEGKF
DKYFSPKPGH*
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mRNA from alignment at P-wetherbeei_contig11896:924..1256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11896.3.1 ID=mRNA_P-wetherbeei_contig11896.3.1|Name=mRNA_P-wetherbeei_contig11896.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig11896:924..1256+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTATATCGTCACAGAAGCATGCATCAAGTGCAAATTCATGGACTG
TGTGGAGGTTTGTCCTGTTGACTGCTTCTACGAAGGCGAAAACATGCTGG
TGATACATCCAGATGAATGTATCGATTGCGGCGTTTGCGAGCCGGAATGC
CCCGCCGAGGCCATTGTCCCCGATACGGAAACAGGCCACGAGAAATTCGC
CGCCATCAATCGGGAATATGCCTTGCAATGGCCAAATATTACGGTTGCCG
GCACACCGCCTGAAGACGCGGATGATTTTAAGGGCGTGGAAGGCAAGTTC
GACAAGTATTTCAGCCCAAAACCGGGCCATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11896:924..1256+

>mRNA_P-wetherbeei_contig11896.3.1 ID=mRNA_P-wetherbeei_contig11896.3.1|Name=mRNA_P-wetherbeei_contig11896.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig11896:924..1256+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTATATCGTCACAGAAGCATGCATCAAGTGCAAATTCATGGACTG
TGTGGAGGTTTGTCCTGTTGACTGCTTCTACGAAGGCGAAAACATGCTGG
TGATACATCCAGATGAATGTATCGATTGCGGCGTTTGCGAGCCGGAATGC
CCCGCCGAGGCCATTGTCCCCGATACGGAAACAGGCCACGAGAAATTCGC
CGCCATCAATCGGGAATATGCCTTGCAATGGCCAAATATTACGGTTGCCG
GCACACCGCCTGAAGACGCGGATGATTTTAAGGGCGTGGAAGGCAAGTTC
GACAAGTATTTCAGCCCAAAACCGGGCCATTAA
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