mRNA_P-wetherbeei_contig11895.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11895.2.1
Unique NamemRNA_P-wetherbeei_contig11895.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: D8LTH4_ECTSI (BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH4_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 8.760e-43
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = 1
Query:    4 ATPGPMQTLIERKL-QVLEPTYLDVINESHMHSGPASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            A  G MQ  IE +L + L P +L+VINESHMHSGPA ESHFKV+VVS++FEGK LL RHRMVN L AEE++  +HALSIQ KTP+QWEAEG  V PSPPCMGGSK
Sbjct:   62 AASGEMQETIEARLSEALSPVHLEVINESHMHSGPAKESHFKVIVVSDEFEGKPLLARHRMVNALFAEEMKGKMHALSIQGKTPAQWEAEGHKVAPSPPCMGGSK 166          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: A0A432WL29_9GAMM (Transcriptional regulator n=2 Tax=Aliidiomarina TaxID=1249554 RepID=A0A432WL29_9GAMM)

HSP 1 Score: 122 bits (307), Expect = 3.030e-34
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   19 MQTLIERKLQ-VLEPTYLDVINESHMHSGPASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            MQ LIE+KL+ V  P YLDV+NESHMHSGPA+ESHFKVV+VS  F+G+RLL+RHR VN +LAEEL E IHAL++ + TP +W  +G A   SP C GGSK
Sbjct:    3 MQQLIEQKLERVFTPEYLDVLNESHMHSGPATESHFKVVIVSSGFKGERLLNRHRSVNEVLAEELAEHIHALALHTYTPEEWVEKGNAPL-SPACRGGSK 101          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: A0A831ZLS3_9DELT (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A831ZLS3_9DELT)

HSP 1 Score: 121 bits (304), Expect = 8.940e-34
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   19 MQTLIERKL-QVLEPTYLDVINESHMHSGPASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            M   IE KL +   P +L+VIN+SH H G  +++HFKV+VV++ F G+RLL RHR VN LL EEL + +HAL+I++ TP+QW A GGA+ PSPPCMGGSK
Sbjct:    3 MHARIEAKLREAFTPAHLEVINQSHHHGGSGTQTHFKVIVVADTFAGERLLSRHRRVNNLLTEELTQGVHALTIEALTPAQWTARGGAIRPSPPCMGGSK 102          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: A0A6L8CLL3_9GAMM (BolA/IbaG family iron-sulfur metabolism protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8CLL3_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 1.270e-33
Identity = 58/100 (58.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   19 MQTLIERKLQVLEPTYLDVINESHMHSGPA-SESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            + + IE KL  L+P +L+V+NESHMHS PA SE+HF+V VVSE+F+G+ LL RHR+VN +L EEL   +HAL++ ++TP +W A+GGAV  SPPC+GGSK
Sbjct:    3 LHSSIEAKLLALDPVHLEVVNESHMHSVPANSETHFRVTVVSERFDGQPLLARHRVVNGMLEEELAAGVHALALHTRTPDEWFAQGGAVPESPPCLGGSK 102          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: UPI001939AEDF (DNA-binding transcriptional regulator BolA-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939AEDF)

HSP 1 Score: 119 bits (299), Expect = 9.300e-33
Identity = 58/103 (56.31%), Postives = 77/103 (74.76%), Query Frame = 1
Query:   13 GPMQTLIERKL-QVLEPTYLDVINESHMHSGP-ASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
             P++T I +KL +   P YLDV+NES  H+ P  SE+HFKVVVVS+ F GKRL+DRHR +N +L++EL  ++HALSIQ+KTP QWE  G  +  +PPC+GGSK
Sbjct:   21 NPVETSIIKKLTETFNPVYLDVVNESFKHNVPKGSETHFKVVVVSDNFSGKRLIDRHRDINNILSKELEGSVHALSIQAKTPDQWEKSGQTIANTPPCLGGSK 123          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: A0A327WXJ1_9GAMM (BolA protein family transcriptional regulator n=2 Tax=Aliidiomarina maris TaxID=531312 RepID=A0A327WXJ1_9GAMM)

HSP 1 Score: 118 bits (296), Expect = 1.520e-32
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 1
Query:   19 MQTLIERKLQVLEPTYLDVINESHMHSGPASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            MQ++IE+KL  L PT+L+V NESHMH GPA+ESHFKV +V+EQFEG+RLL RHR VN +LA EL  +IHAL++ + TP +W     A   SP C+GGSK
Sbjct:    5 MQSIIEQKLAALAPTFLEVANESHMHGGPATESHFKVTLVTEQFEGERLLARHRKVNQILATELAGSIHALALHTYTPDEWYKRQNAPQ-SPACLGGSK 102          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: UPI0014024C0E (bolA-like protein 1 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014024C0E)

HSP 1 Score: 120 bits (300), Expect = 1.570e-32
Identity = 63/103 (61.17%), Postives = 76/103 (73.79%), Query Frame = 1
Query:   13 GPMQTLIERKL-QVLEPTYLDVINESHMHSGP-ASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            GP+Q  I  KL + L P +LDV+NES MH+ P  SE+HFKVVVVS QFEG  LL RHR+VN  L +EL   +HALSIQ++TP QW + GG V PSPPC+GGSK
Sbjct:   41 GPVQESIREKLTRALGPVHLDVVNESGMHAVPRGSETHFKVVVVSAQFEGVSLLARHRLVNEALRDELVGCVHALSIQARTPEQWGSSGGRVDPSPPCLGGSK 143          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: A0A1W0ACH0_9STRA (BolA n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACH0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.570e-32
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 1
Query:    1 MATPGPMQTLIERKL-QVLEPTYLDVINESHMHSGP-ASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            MA PGP+   I+ KL     P +L+V NES+MH+ P  SE+HFKVVVVS++F+GK L+ RHRMVN +L EEL + +HALSIQSKTP QWEA    + PSP C GG K
Sbjct:    1 MAEPGPVFQAIQSKLASAFAPQHLEVFNESYMHNVPKGSETHFKVVVVSDKFDGKSLIQRHRMVNAVLEEELNQGVHALSIQSKTPVQWEANN-TIRPSPTCQGGMK 106          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: UPI00186481E5 (bolA-like protein 1 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI00186481E5)

HSP 1 Score: 119 bits (298), Expect = 2.660e-32
Identity = 64/107 (59.81%), Postives = 79/107 (73.83%), Query Frame = 1
Query:    1 MATPGPMQTLIERKLQV-LEPTYLDVINESHMHS-GPASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            MA+  P++T +  KL   LEP +L+VINESHMH+  P SESHF+VVVVS +FEG  LL RHR+VN  L EEL  +IHAL+IQ+KTP QWE    ++  SPPCMGGSK
Sbjct:   29 MASDRPVETTVRAKLTAALEPAHLEVINESHMHAVPPGSESHFRVVVVSSRFEGLSLLQRHRLVNETLREELSNSIHALAIQAKTPEQWE-NNPSLAKSPPCMGGSK 134          
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Match: A0A6L7MF51_9PROT (BolA/IbaG family iron-sulfur metabolism protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L7MF51_9PROT)

HSP 1 Score: 117 bits (292), Expect = 6.170e-32
Identity = 58/101 (57.43%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   19 MQTLIERKLQ-VLEPTYLDVINESHMHS-GPASESHFKVVVVSEQFEGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPCMGGSK 315
            +QT IE K+Q  L+P +L+V NESHMH+  P SESHFKV VVS +F+GK  + RHR++N LLAEEL   +HALS+ + TP +W+A+ G +  SPPCMGGSK
Sbjct:    3 IQTSIEHKIQGALQPVFLEVANESHMHNVAPGSESHFKVTVVSREFDGKLPVARHRILNRLLAEELAGTVHALSLHTYTPEEWQAKNGEIRKSPPCMGGSK 103          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11895.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTH4_ECTSI8.760e-4369.52BolA protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A432WL29_9GAMM3.030e-3464.00Transcriptional regulator n=2 Tax=Aliidiomarina Ta... [more]
A0A831ZLS3_9DELT8.940e-3457.00BolA/IbaG family iron-sulfur metabolism protein n=... [more]
A0A6L8CLL3_9GAMM1.270e-3358.00BolA/IbaG family iron-sulfur metabolism protein n=... [more]
UPI001939AEDF9.300e-3356.31DNA-binding transcriptional regulator BolA-like n=... [more]
A0A327WXJ1_9GAMM1.520e-3259.60BolA protein family transcriptional regulator n=2 ... [more]
UPI0014024C0E1.570e-3261.17bolA-like protein 1 n=1 Tax=Petromyzon marinus Tax... [more]
A0A1W0ACH0_9STRA2.570e-3257.94BolA n=1 Tax=Thraustotheca clavata TaxID=74557 Rep... [more]
UPI00186481E52.660e-3259.81bolA-like protein 1 n=1 Tax=Megalops cyprinoides T... [more]
A0A6L7MF51_9PROT6.170e-3257.43BolA/IbaG family iron-sulfur metabolism protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11895contigP-wetherbeei_contig11895:1029..1633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTH4
Preferred namebola1
PFAMsBolA
Model size321
Max annot lvl2759|Eukaryota
KEGG koko:K22066
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.44e-43
EggNOG OGsCOG0271@1|root,KOG2313@2759|Eukaryota
Ec32 ortholog descriptionBolA protein
Ec32 orthologEc-02_005630.1
Descriptionprotein maturation by iron-sulfur cluster transfer
Cds size321
COG categoryT
BRITEko00000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.3013728-CDS-P-wetherbeei_contig11895:1028..11541683185930.3013728-CDS-P-wetherbeei_contig11895:1028..1154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11895 1029..1154 +
1683185930.3122585-CDS-P-wetherbeei_contig11895:1438..16331683185930.3122585-CDS-P-wetherbeei_contig11895:1438..1633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11895 1439..1633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11895.2.1prot_P-wetherbeei_contig11895.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11895 1029..1633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11895.2.1

>prot_P-wetherbeei_contig11895.2.1 ID=prot_P-wetherbeei_contig11895.2.1|Name=mRNA_P-wetherbeei_contig11895.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
MATPGPMQTLIERKLQVLEPTYLDVINESHMHSGPASESHFKVVVVSEQF
EGKRLLDRHRMVNTLLAEELREAIHALSIQSKTPSQWEAEGGAVTPSPPC
MGGSKG*
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mRNA from alignment at P-wetherbeei_contig11895:1029..1633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11895.2.1 ID=mRNA_P-wetherbeei_contig11895.2.1|Name=mRNA_P-wetherbeei_contig11895.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=605bp|location=Sequence derived from alignment at P-wetherbeei_contig11895:1029..1633+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGCCCGGGCCGATGCAGACGTTGATTGAGAGGAAGCTGCAGGT CCTCGAGCCAACGTACCTCGACGTGATCAACGAGAGCCACATGCATTCCG GCCCAGCCTCCGAATCGCATTTCAAGGTAAACGATGATTTGACCGCTTGC GCCTCGTTCCTCAAGTGCCAACAAAAAATGACAGTATACTCCAGGTGCTT TCACTGAAACAGCGTGGCGACGTAGCTGCAGTACCTTTGAGCGACTTGGA CACTCTTGAACCTACTGAAACTCCTGAAGGGCACATGCATCGCTCTTCCT CGAACAGTAAAACCCCTGATTAAACGCATGGGACATTTCAATCCAGGCTT CGTGTAAAATCAGTTTTTTTTAATCGAGCCTTCCGTTCCTTCCTCACCCA CATTTCGCAGGTGGTAGTGGTCTCGGAGCAGTTTGAGGGCAAGCGCTTGC TGGACAGGCACCGCATGGTGAACACGCTGCTGGCGGAAGAGCTCAGGGAG GCGATCCACGCGCTCTCGATCCAGAGCAAGACTCCGAGCCAATGGGAGGC CGAAGGCGGGGCGGTCACTCCCTCCCCTCCCTGCATGGGCGGAAGCAAGG GGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11895:1029..1633+

>mRNA_P-wetherbeei_contig11895.2.1 ID=mRNA_P-wetherbeei_contig11895.2.1|Name=mRNA_P-wetherbeei_contig11895.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig11895:1029..1633+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGCCCGGGCCGATGCAGACGTTGATTGAGAGGAAGCTGCAGGT
CCTCGAGCCAACGTACCTCGACGTGATCAACGAGAGCCACATGCATTCCG
GCCCAGCCTCCGAATCGCATTTCAAGGTGGTAGTGGTCTCGGAGCAGTTT
GAGGGCAAGCGCTTGCTGGACAGGCACCGCATGGTGAACACGCTGCTGGC
GGAAGAGCTCAGGGAGGCGATCCACGCGCTCTCGATCCAGAGCAAGACTC
CGAGCCAATGGGAGGCCGAAGGCGGGGCGGTCACTCCCTCCCCTCCCTGC
ATGGGCGGAAGCAAGGGGTGA
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