mRNA_P-wetherbeei_contig1189.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1189.2.1
Unique NamemRNA_P-wetherbeei_contig1189.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: D8LI39_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI39_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 3.930e-35
Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 3
Query:    3 IVHCCFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVARWQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFR 356
            I  C  V+  W+F G E+V+  LC RTYL QS KK LNV RW+SW+ MF  RPRLR  G+Y LK ++ K PVRDM++ +TPG IL V ++RYF+F  DGRVAY L HEPPK+ +R+ +
Sbjct:  316 IFECRAVSSRWSFPGHENVYEGLCRRTYLAQSAKKMLNVKRWRSWQRMFKFRPRLRDTGLYSLKTTYFKKPVRDMSTEWTPGKILRVTYYRYFKFFGDGRVAYALTHEPPKDFVRMLQ 433          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: K3X1T4_GLOUD (FBO_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1T4_GLOUD)

HSP 1 Score: 136 bits (343), Expect = 2.030e-33
Identity = 75/201 (37.31%), Postives = 110/201 (54.73%), Query Frame = 3
Query:   15 CFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVA-------RWQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRVW 596
            C   R    A  + +F  LC R +  Q  K A+  A       ++++W  MF +RPR+R NG Y+LK S+ K P  +M ++ TPGTIL+V+++RYF F  DG V YG+L +PP E   + RA       GRY + R EV V +P S+  + FRL +    RG   +L+L EH S +  D  G   ++  T ++ F+Y R W
Sbjct:  136 CSCKRLHHVARADELFETLCRRIFPVQCPKVAVAAAADRFALRKFRTWFDMFYERPRVRYNGFYWLKISYYKKPELNMWTDITPGTILQVIYYRYFSFQRDGTVLYGMLFKPPHEVTSVLRAMDKGVYVGRYHVERDEVFVSVPTSHNVVEFRLRISKKGRGKNVKLILAEHYSFSEPDRTGWVNYYD-TAEEEFQYYRSW 335          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: A0A6U4L306_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L306_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.540e-32
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 3
Query:    3 IVHCCFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVARW-QSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINR------REVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRV 593
            ++ CC ++      GDE +F +LC  TY  QS++  L V RW  SWR M++ RPR+R NG+YF + S+IK P R+M  +   G ILE +++RY RF   G V YG+  +PPK+A  L    S   V    S+        R V V +   +  +   L ++NGERG FT+L L  H     S   G      +  + +FKYRR+
Sbjct:   11 VISCCSLDLR-RLGGDEVLFRQLCELTYAVQSRRGKLRVERWGHSWRNMYVNRPRMRVNGLYFQRVSYIKRPERNMWYDGEAGNILECIYYRYLRFFRTGEVLYGISLQPPKQAAVLLTDVSSADVHQDVSVGEFEVLPGRRVQVSVRTDHGRVVLDLDIDNGERGSFTRLKLNSHLQFPYSSNTGEARELPILAN-VFKYRRL 212          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: M4BBF8_HYAAE (FBO_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BBF8_HYAAE)

HSP 1 Score: 131 bits (329), Expect = 1.590e-31
Identity = 71/201 (35.32%), Postives = 107/201 (53.23%), Query Frame = 3
Query:   15 CFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVAR-------WQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRVW 596
            C   R    A  E +F   C R Y  Q+ + A+ VAR       + +W  MF  RPR+R NG Y+LK S+ K P   M ++  PGTIL+ +++RYF F  DG V YG+L + P +A    R        GR+ +++ E+ V +P +   + FRLT+   ERG   +LVLQEH + +  D  G   ++  T ++ F Y ++W
Sbjct:  123 CTCKRLLHVARSEILFEAFCRRIYPVQNPRAAVAVARNKFGLRRFATWFNMFHDRPRVRYNGFYWLKVSYYKKPELSMWTDIVPGTILKCIYYRYFSFQRDGTVLYGMLFKAPHDAEAYIRNQRKGVYSGRFYVDKNELMVTVPTNCNEVNFRLTITQRERGRNVKLVLQEHFASSEPDGNGRISYYD-TAEEKFYYYQLW 322          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: A0A5D6Y1B8_9STRA (FBO_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1B8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.120e-31
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 3
Query:   51 ESVFMELCHRTYLTQSQKKALNVA-------RWQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRVW 596
            + +F  LC R +  Q+ + A   A       R+++W  MF +RPR+R NG Y+L+ S+ K P  +M S  TPGTIL+VV++RYF F  DG V YG+L +PP EA    R        GRY + R EV V +P  +  + FRL +    RG   +LVL EH S +  D  G   ++  T ++ F+Y R W
Sbjct:  152 DELFETLCRRIFPAQNPRVAAAAASNRFALRRFRTWFDMFRERPRVRHNGFYWLRISYYKKPELNMWSEVTPGTILQVVYYRYFSFQRDGTVLYGMLFKPPHEAAAELRERRKDVFVGRYHVERDEVFVSVPTRHNVVEFRLAISKRGRGKNVRLVLGEHYSFSEPDRTGWVDYYH-TNEEEFQYYRSW 339          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: G5AAB4_PHYSP (FBO_C domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AAB4_PHYSP)

HSP 1 Score: 126 bits (316), Expect = 1.830e-29
Identity = 70/201 (34.83%), Postives = 104/201 (51.74%), Query Frame = 3
Query:   15 CFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVAR-------WQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRVW 596
            C   R    A  E +F  LC R +  Q+ + A   AR       + +W  MF  RPR+R NG Y+LK S+ K P   M ++  PGTIL+ +++RYF F  DG V YG+L +PP E     R        G++ ++R E+ V +P +   + FRL +   ERG   +L+L+EH + +  D  G   ++  T D+ F Y R W
Sbjct:  147 CTCKRLLQVARSEVLFEALCRRIFPVQNPRAAAAAARNKFGLRRFPTWFAMFHDRPRVRYNGFYWLKVSYYKKPELSMWTDIVPGTILKCIYYRYFSFQRDGTVLYGMLFKPPHEVESHIRNERKGVYRGQFYVDRDELVVSVPTNCNEVNFRLRITQRERGKNVKLILKEHFANSEPDGSGWINYYD-TADEEFYYYRSW 346          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: D0NA64_PHYIT (F-box protein, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NA64_PHYIT)

HSP 1 Score: 125 bits (315), Expect = 4.050e-29
Identity = 71/201 (35.32%), Postives = 103/201 (51.24%), Query Frame = 3
Query:   15 CFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVAR-------WQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRVW 596
            C   R    A  E +F  LC R +  Q+ + A   AR       + +W  MF  RPR+R NG Y+LK S+ K P   M S   PGTIL+ +++RYF F  DG V YG+L + P E     R+       GR+ +++ E+ V +P +   + FRL +   ERG   +LVL+EH + +  D  G   ++  T D+ F Y R W
Sbjct:  173 CTCKRLLQVARSEVLFEALCRRIFPVQNPRAAAAAARNKFGLRRFPTWFDMFQDRPRVRYNGFYWLKVSYYKKPELSMWSEIVPGTILKCIYYRYFSFQRDGTVLYGMLFKAPHEVESHIRSQRKGVYSGRFYVDKDELVVTVPTNCNEVNFRLKITQRERGKNVKLVLKEHFANSEPDGSGWVSYYD-TADEEFYYYRSW 372          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: A0A6A3NXR3_9STRA (FBO_C domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NXR3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.800e-29
Identity = 73/202 (36.14%), Postives = 105/202 (51.98%), Query Frame = 3
Query:   15 CFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVAR-------WQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKV-TPDDLFKYRRVW 596
            C   R    A  E +F  LC R +  Q+ + A   AR       + +W  MF  RPR+R NG Y+LK S+ K P   M ++  PGTIL+ +++RYF F  DG V YG+L +PP E     R        GR+ +++ E+ V +P +   + FRL +   ERG   +LVL+EH   A S+P G+   +   T D+ F Y R W
Sbjct:  146 CACRRLQQVARSELLFEALCRRIFPVQNPRAAAAAARNKFGLRRFPTWFAMFHDRPRVRYNGFYWLKVSYYKKPELSMWTDIAPGTILKCIYYRYFSFQRDGSVLYGMLFKPPHEVETHIRNQRKGVYRGRFYVDKDELVVSVPTNCNEVNFRLQITQCERGKNVKLVLKEHF--ANSEPDGSGWINDYDTADEEFYYYRSW 345          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: A0A7R9U3W2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W2_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.070e-29
Identity = 75/202 (37.13%), Postives = 107/202 (52.97%), Query Frame = 3
Query:    3 IVHCCFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVARWQS-WRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRA---NSPRFVWGRYSINRR-EVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKVTPDDLFKYRRV 593
            ++ CC    H   A  +++F ELC  TY  QSQ+  + V RW   WR MF+ RPR+R NG+YF + S+IKTP R+M     PG ILE V++RY RF A G   YG+  +PPK A  +      +S     G Y +     V  +  A +  +   + V NGERGHFT+L+L  H     +   G      +  + +FK+RR+
Sbjct:  141 VLACCSHEMH-RIATSDNLFRELCIWTYTVQSQRGRMRVERWGGHWRSMFLLRPRVRVNGLYFQRVSYIKTPDRNMWYQGEPGEILECVYYRYLRFFASGVALYGISLQPPKVAAGMLEMPDESSNAVSKGDYVVLPGCRVVANFMAEFGRVELNMQVGNGERGHFTRLLLLRHLQYPFASQGGEARELPILAN-IFKFRRL 340          
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Match: A0A225WA27_9STRA (F-box protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225WA27_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.880e-29
Identity = 72/202 (35.64%), Postives = 106/202 (52.48%), Query Frame = 3
Query:   15 CFVNRHWAFAGDESVFMELCHRTYLTQSQKKALNVAR-------WQSWRGMFIQRPRLRTNGMYFLKHSFIKTPVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRANSPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHTSKARSDPRGTRCWHKV-TPDDLFKYRRVW 596
            C   R    A  E +F  LC R +  Q+ + A   AR       + +W  MF +RPR+R NG Y+LK S+ K P   M ++  PGTIL+ +++RYF F  DG V YG+L +PP E     R        GR+ +++ ++ V +P +   + FRL +   ERG   +LVL+EH   A S+P G+   +   T D+ F Y R W
Sbjct:  144 CTCKRLLQVARSEVLFEALCRRIFPVQNPRAAAAAARNKFGLRRFPTWFDMFHERPRVRYNGFYWLKVSYYKKPELSMWTDIVPGTILKCIYYRYFSFQRDGTVLYGMLFKPPHEVESHIRNQRKGVYRGRFYVDKDDLVVTVPTNCNEVNFRLKITQRERGKNVKLVLKEHF--ANSEPDGSGWVNDYDTADEEFYYYRSW 343          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1189.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI39_ECTSI3.930e-3555.08F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
K3X1T4_GLOUD2.030e-3337.31FBO_C domain-containing protein n=1 Tax=Globispora... [more]
A0A6U4L306_9STRA1.540e-3236.76Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
M4BBF8_HYAAE1.590e-3135.32FBO_C domain-containing protein n=1 Tax=Hyaloperon... [more]
A0A5D6Y1B8_9STRA3.120e-3138.62FBO_C domain-containing protein n=1 Tax=Pythium br... [more]
G5AAB4_PHYSP1.830e-2934.83FBO_C domain-containing protein n=1 Tax=Phytophtho... [more]
D0NA64_PHYIT4.050e-2935.32F-box protein, putative n=3 Tax=Phytophthora infes... [more]
A0A6A3NXR3_9STRA4.800e-2936.14FBO_C domain-containing protein n=4 Tax=Phytophtho... [more]
A0A7R9U3W2_9STRA5.070e-2937.13Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A225WA27_9STRA8.880e-2935.64F-box protein n=3 Tax=Phytophthora TaxID=4783 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1189contigP-wetherbeei_contig1189:3892..5830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000022055
Model size1140
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.51e-38
EggNOG OGsKOG2997@1|root,KOG2997@2759|Eukaryota,1MCPP@121069|Pythiales
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-04_003120.1
DescriptionF-box protein. Source PGD
Cds size543
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1189.2.1prot_P-wetherbeei_contig1189.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1189 3954..5295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.069358-UTR-P-wetherbeei_contig1189:3891..39531683185930.069358-UTR-P-wetherbeei_contig1189:3891..3953Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1189 3892..3953 +
1683185930.109596-UTR-P-wetherbeei_contig1189:5295..58301683185930.109596-UTR-P-wetherbeei_contig1189:5295..5830Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1189 5296..5830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185930.0778613-CDS-P-wetherbeei_contig1189:3953..39861683185930.0778613-CDS-P-wetherbeei_contig1189:3953..3986Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1189 3954..3986 +
1683185930.0853493-CDS-P-wetherbeei_contig1189:4186..44471683185930.0853493-CDS-P-wetherbeei_contig1189:4186..4447Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1189 4187..4447 +
1683185930.0947888-CDS-P-wetherbeei_contig1189:4715..48651683185930.0947888-CDS-P-wetherbeei_contig1189:4715..4865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1189 4716..4865 +
1683185930.1020627-CDS-P-wetherbeei_contig1189:5196..52951683185930.1020627-CDS-P-wetherbeei_contig1189:5196..5295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1189 5197..5295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1189.2.1

>prot_P-wetherbeei_contig1189.2.1 ID=prot_P-wetherbeei_contig1189.2.1|Name=mRNA_P-wetherbeei_contig1189.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=181bp
MELCHRTYLTQSQKKALNVARWQSWRGMFIQRPRLRTNGMYFLKHSFIKT
PVRDMTSNYTPGTILEVVWFRYFRFNADGRVAYGLLHEPPKEAIRLFRAN
SPRFVWGRYSINRREVTVDIPASYAHIRFRLTVENGERGHFTQLVLQEHT
SKARSDPRGTRCWHKVTPDDLFKYRRVWVI*
back to top

mRNA from alignment at P-wetherbeei_contig1189:3892..5830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1189.2.1 ID=mRNA_P-wetherbeei_contig1189.2.1|Name=mRNA_P-wetherbeei_contig1189.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1939bp|location=Sequence derived from alignment at P-wetherbeei_contig1189:3892..5830+ (Phaeothamnion wetherbeei SAG_119_79)
CCATCGTCCACTGCTGCTTCGTCAACCGCCACTGGGCCTTCGCGGGCGAC GAGAGCGTCTTCATGGAACTCTGTCACCGCACCTACCTCACGCAGGTGCG CGTGTAAACGGGTCCGCTCCTCTTGGAAGTTTTTTTAGGTCGTCAGACTT TGCCTTGGCGAAAGGCGTCTTGGGATTGTTAATCGTGTTTTGCACGGGCA TCGCATGCAGAGTGCATCCGGCTTGTTGGTCCTTTGCCGCATCGCTCTTG CCCAAAATTGTCCCTGCTTGTCCCGTCCCATCTCCGGCACGGCAGTCCCA GAAGAAGGCGCTTAATGTGGCGCGCTGGCAGTCGTGGCGCGGCATGTTCA TCCAGCGGCCGCGCCTGCGGACCAATGGCATGTACTTCCTCAAGCACAGC TTCATCAAGACGCCAGTTCGTGACATGACGTCAAACTACACTCCAGGCAC CATCCTGGAGGTGGTGTGGTTCAGATATTTTAGGTTCAACGCCGACGGCC GCGTGGCGTACGGGCTGCTGCATGAACCGCCCAAGGAGGCCATCCGCCTC TTCCGGGTGAGTCGATCGAACGGGTGTGCGGAAGTTGGGCGGTGACCTCA ATTTGTTGTAGCTGATTCGTACTGTTTTCTGCTACGGGGGCGCCCGTTTG TTCGTGTAATGGATTGGGTTCCGGTTTCACGGCAGAGAAGGAGCAGTGCC CCTCTACTTCGCGAATCCAAACCCCACCTGACTGTCCAGCTCATGCCGGA ATGAGTTGGCAGAACGGATACGTCTCTCAACTAGCTAGTTTCCCTTCCTC TCTTTCACTGCTCGGAGAGGGCAGGCGAACAGCCCGCGCTTCGTGTGGGG CCGCTACTCGATCAACCGGCGCGAGGTGACGGTCGACATCCCAGCATCGT ACGCCCACATCCGCTTCCGCCTTACGGTCGAGAACGGCGAGCGGGGTCAC TTCACGCAGCTCGTGTTGCAGGAGGTGAGGAGGAGAAGGAATGGTTGGAA GAGTAATTCCTTAGAGAAAAACAACCGGCTATACGCAGTTAGTTTTTTTG GATTCATGGCCTTGTTCTTCCCAATGGAGTGCGGTCTCTTGGAACGAAGC TTCTCAGTCGCAATGGCTTGTTTATGAGCGCCCTATTAGAATGGACGTGT GGAGTCATTATGACCTTTTTCCCCTGCAAGGAAGACAAGCAGTTCGACTC TGAGTTCCAATTACGTTGTTTTGTTCGCCACAGACGGGAAGACAAACCGT GTGGGCTCATGTACCGTCTCGTGCCTTGCACGTCGTCCTCTTCGCCTCCG CACAGCACACGTCGAAGGCGCGGAGCGACCCTCGCGGCACGCGCTGCTGG CACAAGGTCACGCCAGACGATCTCTTCAAATACCGGCGAGTGTGGGTAAT CTAAGTCGCAGCCGCGGCGGCGATGATGACGGTGGCCGCGGCGGCGCCGG CGATGGCGACGTCGACGGCGACGGCAGCTGCCGGACGCGCATGTGGCAAC GATCGCAACGATCAGCAGCATTGGCAGCGGAAGTGGCGGCGGCCGCAGCG GCGGTGGCAAAAGCGACGACGGCGGTCCTGGTAGCTGCTCCACTAGAATC CGCGGTGGCAGTCGGGGATACATTGCTAACGATGGAAACTTTTCAGGCCA GGCAGCAGCTGATTGTCTCGTCCATGCGTGGGGCATCGGCATGAGAGAGC CAACATGCAGTCGAAGCGCAGCGACACAAACTGGCATTGCTGCGGCAACC CTTGGAAGAGCCGGGGCTGCTACCGCGGGGCAGAGGCAATGCAGCCGTGG GGCGGCTTGGAAAGGCTGTATCAGAGTGGGAAGCGGCAAGTCGGTGGGTG TACTTGGTGAGGGGACGTGTGCGATGTTTATTCTGGGCGGACGGTGCAGA TGACGGAAACTTTAACAGCATTTGCAGGGTTGGCGGCAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1189:3892..5830+

>mRNA_P-wetherbeei_contig1189.2.1 ID=mRNA_P-wetherbeei_contig1189.2.1|Name=mRNA_P-wetherbeei_contig1189.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=543bp|location=Sequence derived from alignment at P-wetherbeei_contig1189:3892..5830+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACTCTGTCACCGCACCTACCTCACGCAGTCCCAGAAGAAGGCGCT
TAATGTGGCGCGCTGGCAGTCGTGGCGCGGCATGTTCATCCAGCGGCCGC
GCCTGCGGACCAATGGCATGTACTTCCTCAAGCACAGCTTCATCAAGACG
CCAGTTCGTGACATGACGTCAAACTACACTCCAGGCACCATCCTGGAGGT
GGTGTGGTTCAGATATTTTAGGTTCAACGCCGACGGCCGCGTGGCGTACG
GGCTGCTGCATGAACCGCCCAAGGAGGCCATCCGCCTCTTCCGGGCGAAC
AGCCCGCGCTTCGTGTGGGGCCGCTACTCGATCAACCGGCGCGAGGTGAC
GGTCGACATCCCAGCATCGTACGCCCACATCCGCTTCCGCCTTACGGTCG
AGAACGGCGAGCGGGGTCACTTCACGCAGCTCGTGTTGCAGGAGCACACG
TCGAAGGCGCGGAGCGACCCTCGCGGCACGCGCTGCTGGCACAAGGTCAC
GCCAGACGATCTCTTCAAATACCGGCGAGTGTGGGTAATCTAA
back to top