mRNA_P-wetherbeei_contig11879.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11879.1.1
Unique NamemRNA_P-wetherbeei_contig11879.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A8J2WWE3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWE3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 6.030e-37
Identity = 128/364 (35.16%), Postives = 166/364 (45.60%), Query Frame = 1
Query:  439 GEHAFHMLKLIPAVYASVLEDAETSLRLFAALGDALVVDPFFAETAHLYINMALDLKLPQDA-----------VDKAVRVAWQSIEAGRSYDLPSRHLQPPRHVSGSLLLTVASHSSPRLEL--LRRSAVAAGMDLRVEGMGMPWRGFGDKIFRTLEALQ--GVDDNTLVIFLDAFDTLLLPAAKDIARRFLW----HGGDIIFGTEIECAHDSGLVWLYP-PHLAAACAFLNSGTYAGRASDVRWMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHALPPGDLTFVPGDPALLRFGPTGGSPCILHGNGDQGKDTLDVLTEGLKA-AGWPPESAAALRA 1467
            GE AF   K++   Y  + E A   LR       A    P  A  AH+  N  +   + +             +D+A  V   ++   R   + +R L+P     G  L  V   SS R EL  LR S    G +L V G+G PWRG G K+      L   GV  + L++FLDA+D LLLPAA  + +RF        G ++F +E+ CA D  +  LY  P   A   FLNSG Y GRA DVR ML  V  D+  +HA  G D     DQRWF RF +  A   RV LDA  + F TL  +   D   V GD  + R      +P  +HGNG+ G      L+  L A  GWP  S A   A
Sbjct:  198 GEVAF---KMVVETYPDLHESALAHLRA------ATAARPLGAAHAHVLANTLVAAHMARHPERIRRGAAAPLLDEATAVLNATLNNARGLSVEARRLRP----GGGALRVVCVASSERAELTRLRASVKRLGAELTVLGLGQPWRGLGSKVALLAAHLDASGVAADDLILFLDAYDVLLLPAAAQLRKRFTALEREKQGAVVFNSEVNCAPDPSMRLLYGRPADGAPFRFLNSGIYLGRARDVRSMLAVVAADVEAHHASLGADPYRFDDQRWFNRFAI--AFPERVHLDARASFFHTLQDMDASDFDIVDGD-LVSRISEA--APMAVHGNGN-GITAFHDLSRRLAADLGWPDSSDAVFAA 542          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A7S3JT65_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JT65_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.070e-36
Identity = 124/375 (33.07%), Postives = 182/375 (48.53%), Query Frame = 1
Query:  403 RGAYFDISGLWTGEHAFHMLKLIPAVYASVLEDA-ETSLRLFAALGDALVVDPFFAETAHLYINMALDLKL------------PQDAVDKAVRVAWQSIEAGRSYDLP----SRHLQPPRHVSGSLLLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWRGFGDKIFRTLEALQ-GVDDNTLVIFLDAFDTLLLPAAKDIARRFLW-----HGGDIIFGTEIECAHDSGLVWLYPPHLAAACAFLNSGTYAGRASDVRWMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHALPPG--DLTFVP---GDPALLRFGPTGGSPCILHGNGDQGKDTLDVLTEGL-KAAGWP 1440
            +   FD+ G +TG++    +++          D  + +L L   L  A   +P FA  +HL  N+ L LK             P   +++A  +  QS++     ++     + +  P  HV     + V+S+  P L+ LRRSA   G  L++ G+  PWRG G KI      L   +  + +V+F+DA+D LLL  A +I++ F+        G I+FG E+ CA D  L  +YP    +A  FLNSGT  GR  D+R+ML  V  D+  +H  +G D     DQRW+ RF L  A+  R +LD    LF TLH   P   DL+  P       LLR       PC++HGNG+ G DT   L+E L + A WP
Sbjct:  169 KNLLFDLEGFFTGKNYSEKVEVSLKFVMEQRPDLHDIALDL---LRTARNTNPKFAILSHLLANI-LYLKHIALHPNRIKRTDPAPLLEEARSILNQSLQDAVFPNVDDTCMTENKNPKLHV-----ICVSSNDRPELQRLRRSAERLGWQLQILGLNQPWRGLGSKIELLQHYLSDSIPRSDMVLFVDAYDVLLLEPAINISQNFIQFIEPTRPGVIVFGAEMNCAPDPALRLMYPETAPSAFRFLNSGTILGRVHDIRYMLTAVRRDIEFHHVRFGADPFRFDDQRWYARFML--ANPHRAMLDITSRLFHTLHDTSPQHFDLSQHPDFENQHLLLRSKLFNTFPCLIHGNGN-GIDTFHDLSEYLARNASWP 531          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A7S2RJ31_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ31_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.400e-22
Identity = 85/248 (34.27%), Postives = 121/248 (48.79%), Query Frame = 1
Query:  688 SRHLQPP--RHVSGS------LLLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWRGFGDKIFRTLEALQ----------GVDDNTLVIFLDAFDTLLLPAAKD--IARRFLWHGGDIIFGTEIECAHDSGLVWLYP-PH-------------------------LAAACAFLNSGTYAGRASDVRWMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHALPP 1293
            S+HL P   +  +GS      +++TVA+   P LE LR+SA   GMD+ + G+G   R +G K    LE ++           + D+TLV+F+DA+D LLLP+     IA RF       IF  E  C  D G+   YP P+                         +A    + NSG Y  RA  +R M+ EV++D+RR+H   GGD   A DQRW  R +LRH +   V +D+   +FL+LH   P
Sbjct:   91 SKHLFPSSSKDTTGSQDRPAVVVVTVATDLGPELESLRQSAQIHGMDVEILGIG---RVYGTKGGTKLELMEEWLSPGGRGHDLPDDTLVLFVDAYDVLLLPSVSPEAIATRFAQFNVSAIFSGETGCWPDPGVAPGYPYPYFHHQPQFGDLYNVSNYRFPAAGGTPVAVPFPYPNSGGYLARAGYMRRMIIEVMDDMRRHHFVGGGDAKDADDQRWIQRHWLRHPED--VAIDSFAEIFLSLHRCCP 333          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A821LJS9_9NEOP (Hypothetical protein n=1 Tax=Pieris macdunnoughi TaxID=345717 RepID=A0A821LJS9_9NEOP)

HSP 1 Score: 90.5 bits (223), Expect = 1.080e-15
Identity = 80/235 (34.04%), Postives = 111/235 (47.23%), Query Frame = 1
Query:  727 LLLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWRGFGD----------KIFRTL--EALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYPP-HLAAACAFLNSGTYAGRASDVRWMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLR---HADSSRVVLDAGRTLFLTLH-ALPPGDLTFVPGDPALLRFGPTGGSPCILHGNG 1380
            +++TV +  +  L+   RSA   G+ + V G G  WRG GD           + R    +A   +D +TLVIF D++D +LL  A ++  RFL     IIF  E  C  D+GL   YPP   +    +LNSG + GR  D+R ++     D+  N          A DQ  +TR +L     AD   +VLD   T+F TL+ AL    L       A L    +G  P ILHGNG
Sbjct:   32 VVVTVGTEDTHGLQRFERSARIYGLHVEVLGRGTAWRG-GDMKRPGGGHKVNLLRDWINQAYDNLDSDTLVIFTDSYDVILLGGADELRERFLAARHRIIFAAEPFCWPDAGLAARYPPPDTSTPSPYLNSGGFIGRLEDLRRLIRAA--DIDDN----------ADDQLHYTRLYLDPKVRADLD-IVLDHNATIFQTLNGALSDVKLHSSDEGWAWLENVVSGTRPLILHGNG 252          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A6C0L862_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0L862_9ZZZZ)

HSP 1 Score: 87.0 bits (214), Expect = 1.660e-15
Identity = 59/208 (28.37%), Postives = 96/208 (46.15%), Query Frame = 1
Query:  832 WRGFGDKIFRTLEALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYPPHLAAACAFLNSGTYAGRASDVR----WMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHALPPGDLTFVPGDPALLRFGPTGGSPCILHGNG-----DQGKDTLDVLTEGLKA 1428
            W G+ DKI  T + L+GV D+ +V F+DA+D L L +A++I  +F W+  D++ G E+         +  P        ++NSG Y G    ++    W  DE +E +  N        L   DQ +F  ++LR+  S R+ LD  + +F  +H +    L    G    +        PC +H NG     + G++ L V    L+A
Sbjct:   36 WNGYFDKIIYTRKFLEGVGDDDIVCFVDAYDVLSLASAEEILTKFKWYECDLLLGAELNSYPQRYKEYYPPKEYTTNSIYINSGGYIGYKHAIQKLLYWHDDETIERMCSN--------LNGGDQAYFIEYYLRNP-SDRIKLDTWQKIFQNMHWVSWNQLYIHRGRVVNVMLDE---KPCFIHFNGGTWQTNDGENILPVFVYKLQA 231          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A7V9UGR6_9BACT (Uncharacterized protein n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9UGR6_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-15
Identity = 65/223 (29.15%), Postives = 101/223 (45.29%), Query Frame = 1
Query:  730 LLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWRGFGDKIFRTLEALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYP------PHLAAACAFLNSGTYAGRASDVRWMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHALPPGDLTFVPGDPALLRFGPTGGSPCILHGNG 1380
            + TVAS  +  L+ L  S    G+ + V GMG P++G   K+    + +Q +DDN +V+F+DA+D L    A  I + FL      +   E  C       W YP      P    +  ++NSG+Y G      + L E++ D++    P+        DQ  FTR +  + D      DA   LF+    +   +L   P D  ++    TG  PC++HGNG
Sbjct:   27 ICTVASQRNKGLDQLLDSCDRYGLSIDVMGMGQPFKGNSHKLMYVQDYIQNLDDNDVVLFVDAYDVLFFADADKILQTFLNIDKPFVISVERYC-------WPYPNLEPSFPRGPTSFRYINSGSYMGYV----YRLKEILNDIQPK--PF------QDDQGLFTRHYFENPDL--YTFDAYCELFMPFAGVIMQELHIDPSDDTVV-VNETGIKPCMIHGNG 227          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: UPI000B92CD76 (procollagen-lysine,2-oxoglutarate 5-dioxygenase n=3 Tax=Pieris TaxID=7115 RepID=UPI000B92CD76)

HSP 1 Score: 89.4 bits (220), Expect = 5.150e-15
Identity = 80/235 (34.04%), Postives = 111/235 (47.23%), Query Frame = 1
Query:  727 LLLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWRGFGD----------KIFRTL--EALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYPP-HLAAACAFLNSGTYAGRASDVRWMLDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFLR---HADSSRVVLDAGRTLFLTLH-ALPPGDLTFVPGDPALLRFGPTGGSPCILHGNG 1380
            +++TV +  +  L+   RSA   G+ + V G G  WRG GD           + R    +A   +D +TLVIF D++D +LL  A ++  RFL     IIF  E  C  D+GL   YPP   +    +LNSG + GR  D+R ++     +L  N          A DQ  +TR +L     AD   +VLD   T+F TL+ AL    L       A L    +G  P ILHGNG
Sbjct:   32 VVVTVGTEDTHGLQRFERSARIYGVHVEVLGRGTAWRG-GDMKRPGGGHKVNLLRDWINQAYDSLDSDTLVIFTDSYDVILLGGADELKERFLAARHRIIFAAEPFCWPDAGLAARYPPPDTSTPSPYLNSGGFIGRLEDMRRLIRAA--ELDDN----------ADDQLHYTRLYLDPKIRADLD-IVLDHNATIFQTLNGALSDVKLHSSEEGFAWLENVVSGTRPLILHGNG 252          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A6C0JRN3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JRN3_9ZZZZ)

HSP 1 Score: 85.1 bits (209), Expect = 9.430e-15
Identity = 50/173 (28.90%), Postives = 92/173 (53.18%), Query Frame = 1
Query:  760 RLELLRRSAVAAGMDLRVEGMGMPWRGFGDKIFRTLEALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYPPHLAAACAFLNSGTYAGRASDVRWMLDEVVE--------DLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSR-VVLD 1251
            + + L +SA A  +++ + G+G+ W+ F +K+    + L+ VDDN +V+ LDA+D ++L  A++I ++FL     ++F  E  C  D G +W   P+      ++N+GTY G A  ++ ML+E+ +        D  + H           DQR  TR++L + ++   + LD
Sbjct:   55 KFKTLVKSATANNINIHINGIGVKWKDFSNKLENFHKFLENVDDNKIVMSLDAYDIIILDNAENIKKKFLEFDKSLVFSAEKYCWPD-GNIWNKYPNQDDIFKYVNAGTYMGYAWKIKEMLNELKKTNYNCLTYDTNKYHEK-------VDDQRCLTRYYLNNVNNQNDIALD 219          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A6A7FVY8_9CRUS (Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FVY8_9CRUS)

HSP 1 Score: 78.6 bits (192), Expect = 1.350e-11
Identity = 67/233 (28.76%), Postives = 107/233 (45.92%), Query Frame = 1
Query:  727 LLLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWRGFGDKIFRT----------LEALQGVDDNTLVI-FLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYPPHLAAACAFLNSGTYAGRASDVRWM--LDEVVEDLRRNHAPYGGDILLAPDQRWFTRFFL--RHADSSRVVLDAGRTLFLTLHALPPGDLTFVPGDPALLRFGPTGGSPCILHGNG 1380
            L+LTVA+H +       RSA   G++++V GMG PWRG GD    T           E  +  D+  LVI F D++D +    A++I ++F      ++FG E  C  D  LV  YP  ++    +LNSG + G AS++  +  +D  + D              + DQ ++T  FL  +  D  ++ LD+   +F  L+ +         G+   L        P ++HGNG
Sbjct:   43 LVLTVATHETDGFHRYLRSAAVYGVNVKVLGMGEPWRG-GDMASGTGGGQKINLLKKELTKHKDELDLVIMFTDSYDVVFTAGAQEILQKFSKCKCRVLFGAEDSCWPDPSLVQKYPK-VSYGYRYLNSGGFMGYASEMYKLVSIDSAILDT-------------SDDQLYYTNTFLDQKTRDELQIKLDSQAKIFQNLNLVAADVSLKFKGEDTRLINTVYQTKPVVIHGNG 260          
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Match: A0A2E7T7G8_9GAMM (Uncharacterized protein n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E7T7G8_9GAMM)

HSP 1 Score: 74.7 bits (182), Expect = 1.930e-11
Identity = 62/226 (27.43%), Postives = 96/226 (42.48%), Query Frame = 1
Query:  760 RLELLRRSAVAAGMDLRVEGMGMPWRGFGDKIFRTLEALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDIIFGTEIECAHDSGLVWLYPPHLAAACAFLNSGTYAGRASDVRWMLDEVV------EDLR------RNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHALPPGDLTFVPGDPALLRFGPTGGSPCILHGNGDQGKDTL 1401
            +++ L  SA   G++L+V G  +PWRG  DK+ R  E LQ +    + +F+D +D  ++     I  +F  +    +   E  C  D  +  +Y P   +  A++NSGTY G      W + E        ED R          P+ G      DQR  T ++L H + +  VLD  + +F TL   P          P  +    T     ++HGN   G  TL
Sbjct:   15 KMDTLLASAHLNGVELKVRGDKVPWRGNLDKLSRLHEELQSLHPEDIFMFVDGYDVAIVSDTDYILEQFYSYDAPFVISAEKTCWPDDHVA-MYYPESDSDYAYVNSGTYIGYV----WAVSEYFNYCAQYEDYRVPPFDGYEPIPHAGS-----DQRALTTWYLNHPEEA--VLDVDQKIFSTLANTPLESFELTA--PNKVTNLETKHQTGVIHGNSPAGMKTL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11879.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2WWE3_9STRA6.030e-3735.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JT65_9STRA1.070e-3633.07Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2RJ31_9STRA9.400e-2234.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A821LJS9_9NEOP1.080e-1534.04Hypothetical protein n=1 Tax=Pieris macdunnoughi T... [more]
A0A6C0L862_9ZZZZ1.660e-1528.37Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7V9UGR6_9BACT2.460e-1529.15Uncharacterized protein n=1 Tax=Parachlamydiaceae ... [more]
UPI000B92CD765.150e-1534.04procollagen-lysine,2-oxoglutarate 5-dioxygenase n=... [more]
A0A6C0JRN3_9ZZZZ9.430e-1528.90Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6A7FVY8_9CRUS1.350e-1128.76Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-... [more]
A0A2E7T7G8_9GAMM1.930e-1127.43Uncharacterized protein n=1 Tax=Acidiferrobacterac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11879contigP-wetherbeei_contig11879:2..2080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1437425.CSEC_0162
Model size1608
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.75e-21
EggNOG OGs2DSW0@1|root,33HMH@2|Bacteria
Cds size1245
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11879.1.1prot_P-wetherbeei_contig11879.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11879 239..1954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.550032-UTR-P-wetherbeei_contig11879:1..2381683185929.550032-UTR-P-wetherbeei_contig11879:1..238Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11879 2..238 +
1683185929.612132-UTR-P-wetherbeei_contig11879:1954..20801683185929.612132-UTR-P-wetherbeei_contig11879:1954..2080Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11879 1955..2080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.5671709-CDS-P-wetherbeei_contig11879:238..4071683185929.5671709-CDS-P-wetherbeei_contig11879:238..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11879 239..407 +
1683185929.5765896-CDS-P-wetherbeei_contig11879:549..7971683185929.5765896-CDS-P-wetherbeei_contig11879:549..797Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11879 550..797 +
1683185929.5857823-CDS-P-wetherbeei_contig11879:932..11791683185929.5857823-CDS-P-wetherbeei_contig11879:932..1179Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11879 933..1179 +
1683185929.5979693-CDS-P-wetherbeei_contig11879:1373..19541683185929.5979693-CDS-P-wetherbeei_contig11879:1373..1954Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11879 1374..1954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11879.1.1

>prot_P-wetherbeei_contig11879.1.1 ID=prot_P-wetherbeei_contig11879.1.1|Name=mRNA_P-wetherbeei_contig11879.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=415bp
MQRFGLGGFAVTRPSDPQPADRPTTEESNVGGKEAATLLQDVLTQELLMQ
ELRTLRGAYFDISGLWTGEHAFHMLKLIPAVYASVLEDAETSLRLFAALG
DALVVDPFFAETAHLYINMALDLKLPQDAVDKAVRVAWQSIEAGRSYDLP
SRHLQPPRHVSGSLLLTVASHSSPRLELLRRSAVAAGMDLRVEGMGMPWR
GFGDKIFRTLEALQGVDDNTLVIFLDAFDTLLLPAAKDIARRFLWHGGDI
IFGTEIECAHDSGLVWLYPPHLAAACAFLNSGTYAGRASDVRWMLDEVVE
DLRRNHAPYGGDILLAPDQRWFTRFFLRHADSSRVVLDAGRTLFLTLHAL
PPGDLTFVPGDPALLRFGPTGGSPCILHGNGDQGKDTLDVLTEGLKAAGW
PPESAAALRAAAAM*
back to top

mRNA from alignment at P-wetherbeei_contig11879:2..2080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11879.1.1 ID=mRNA_P-wetherbeei_contig11879.1.1|Name=mRNA_P-wetherbeei_contig11879.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2079bp|location=Sequence derived from alignment at P-wetherbeei_contig11879:2..2080+ (Phaeothamnion wetherbeei SAG_119_79)
ATATTCACTGGCCTCTCAGTTGGATACCACAATTTAACCATCTCGAGTGG AGAGACTGGGCGCGGGGCTTCGTCATGGTTCCATGTCTCTCCCGGCGTCT CGGCCAAAAAGGCCCGAGGAGACAATCACAAGGCCCATGTCATCTATATC AAAACTGGTAGCACGGCGTCCGCCGATCAATTACCCATCAGCGTTTCTCG CTTCGATCTGCATGACCTCCAGCTTGCGAAAGGTTACATGCAGCGCTTCG GGCTCGGCGGCTTCGCCGTTACAAGGCCTTCAGATCCTCAACCGGCGGAT AGGCCGACAACAGAGGAAAGCAACGTTGGCGGCAAGGAGGCGGCGACTTT GCTTCAGGACGTCCTCACCCAGGAGCTGCTCATGCAGGAGCTGCGCACCT TGAGAGGTCGGCTGGTTTTCGCGACGGGGCCAGCCTTCGGATTTTGAGGC TGTTTACTGAGGGAATGCAGACACATTATAGCAGGGAAGGTCTAACCAAC GGCAGTTTGTCTCGCGCTTCCCCCGGCGCCTGCCACCGTACCATGCAGGG GCTTACTTTGACATTTCGGGACTTTGGACGGGGGAGCACGCTTTTCACAT GCTCAAGCTGATTCCGGCCGTGTACGCGTCTGTTCTGGAGGATGCGGAGA CGTCCCTGCGTCTCTTTGCGGCCCTTGGCGACGCCTTGGTGGTCGACCCT TTCTTCGCAGAGACGGCGCATTTGTACATTAACATGGCGCTGGACCTGAA ACTGCCGCAGGATGCCGTCGATAAGGCCGTCCGGGTCGCCTGGCAGGCAA GAAGTGGGAGAGAGCAACTTTTAACTTGCCCATTGCTGCTTTTCGGTTCT TCTTCATAGCTTAAGTTCTGGGCCGCCCGAACACGGCTGACGCGAGGAAA CCTTCTGTGTTCTTACTTTTCCGGGCCGCAGTCGATCGAAGCGGGCCGAA GCTATGATCTGCCATCGCGCCACCTCCAGCCGCCGCGGCATGTATCTGGA TCCCTGCTGCTCACCGTGGCCAGCCACAGCAGCCCGCGCCTGGAGCTGCT GCGGCGGTCGGCGGTCGCCGCCGGGATGGACCTGCGGGTCGAAGGCATGG GCATGCCGTGGCGCGGGTTCGGCGACAAGATTTTTCGAACGCTTGAGGCG CTGCAAGGCGTCGACGATAACACGCTCGGTAAGATGCGCTGCTCTAAGTT TTGCGTTACTTTCTTGCCGCCGTCGACACCTACCAGCCTAATCCGCACCG ACATGTTTATATAAGGGATGTTGACGGCATCATGAAAGAGAAAGTTGTTT ACTGCAGCCAGCGAAGGCGGCAGGCTCTGCTCATTTCACGCACGCTGCAT GTCCGCACCTCCAAAACTGCAGTGATCTTTCTGGACGCCTTCGACACGCT GCTGCTTCCCGCAGCGAAGGACATCGCGCGTCGCTTTCTGTGGCACGGCG GCGATATCATCTTCGGCACTGAAATAGAATGCGCCCACGACTCCGGCCTG GTCTGGCTTTACCCGCCACATCTCGCCGCTGCCTGTGCTTTTCTCAACTC GGGCACATACGCTGGGCGCGCATCCGATGTCAGGTGGATGCTCGACGAGG TTGTTGAAGACCTGCGGCGGAACCACGCGCCATATGGCGGCGACATTCTG CTTGCCCCAGACCAGCGGTGGTTCACCCGCTTTTTCCTTCGGCACGCCGA CTCCAGCCGCGTCGTGCTGGACGCTGGCCGGACGCTCTTTCTGACGCTGC ACGCGCTGCCGCCAGGCGACCTGACCTTTGTGCCGGGCGATCCGGCGCTG CTCCGGTTCGGGCCAACCGGCGGGTCTCCATGCATTCTCCACGGGAACGG AGACCAGGGCAAAGATACCCTCGATGTTCTGACGGAGGGGTTGAAAGCCG CTGGATGGCCGCCTGAAAGCGCGGCGGCATTGCGCGCCGCCGCCGCCATG TGATGGCGGTCGTATCGCAGTGGTAGTTTGTCCAAAAGAAACCGAGGCGA TGGGTTCTAGTCGTCTTGCATCTTCGTGAAATGCGTATTTGCGTAGAGGG GTCTGGAAGTTGAGATGCAATCGCATAAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig11879:2..2080+

>mRNA_P-wetherbeei_contig11879.1.1 ID=mRNA_P-wetherbeei_contig11879.1.1|Name=mRNA_P-wetherbeei_contig11879.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1245bp|location=Sequence derived from alignment at P-wetherbeei_contig11879:2..2080+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCGCTTCGGGCTCGGCGGCTTCGCCGTTACAAGGCCTTCAGATCC
TCAACCGGCGGATAGGCCGACAACAGAGGAAAGCAACGTTGGCGGCAAGG
AGGCGGCGACTTTGCTTCAGGACGTCCTCACCCAGGAGCTGCTCATGCAG
GAGCTGCGCACCTTGAGAGGGGCTTACTTTGACATTTCGGGACTTTGGAC
GGGGGAGCACGCTTTTCACATGCTCAAGCTGATTCCGGCCGTGTACGCGT
CTGTTCTGGAGGATGCGGAGACGTCCCTGCGTCTCTTTGCGGCCCTTGGC
GACGCCTTGGTGGTCGACCCTTTCTTCGCAGAGACGGCGCATTTGTACAT
TAACATGGCGCTGGACCTGAAACTGCCGCAGGATGCCGTCGATAAGGCCG
TCCGGGTCGCCTGGCAGTCGATCGAAGCGGGCCGAAGCTATGATCTGCCA
TCGCGCCACCTCCAGCCGCCGCGGCATGTATCTGGATCCCTGCTGCTCAC
CGTGGCCAGCCACAGCAGCCCGCGCCTGGAGCTGCTGCGGCGGTCGGCGG
TCGCCGCCGGGATGGACCTGCGGGTCGAAGGCATGGGCATGCCGTGGCGC
GGGTTCGGCGACAAGATTTTTCGAACGCTTGAGGCGCTGCAAGGCGTCGA
CGATAACACGCTCGTGATCTTTCTGGACGCCTTCGACACGCTGCTGCTTC
CCGCAGCGAAGGACATCGCGCGTCGCTTTCTGTGGCACGGCGGCGATATC
ATCTTCGGCACTGAAATAGAATGCGCCCACGACTCCGGCCTGGTCTGGCT
TTACCCGCCACATCTCGCCGCTGCCTGTGCTTTTCTCAACTCGGGCACAT
ACGCTGGGCGCGCATCCGATGTCAGGTGGATGCTCGACGAGGTTGTTGAA
GACCTGCGGCGGAACCACGCGCCATATGGCGGCGACATTCTGCTTGCCCC
AGACCAGCGGTGGTTCACCCGCTTTTTCCTTCGGCACGCCGACTCCAGCC
GCGTCGTGCTGGACGCTGGCCGGACGCTCTTTCTGACGCTGCACGCGCTG
CCGCCAGGCGACCTGACCTTTGTGCCGGGCGATCCGGCGCTGCTCCGGTT
CGGGCCAACCGGCGGGTCTCCATGCATTCTCCACGGGAACGGAGACCAGG
GCAAAGATACCCTCGATGTTCTGACGGAGGGGTTGAAAGCCGCTGGATGG
CCGCCTGAAAGCGCGGCGGCATTGCGCGCCGCCGCCGCCATGTGA
back to top