mRNA_P-wetherbeei_contig11876.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11876.2.1
Unique NamemRNA_P-wetherbeei_contig11876.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A3C0TYL3_9PROT (Acyl carrier protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TYL3_9PROT)

HSP 1 Score: 83.2 bits (204), Expect = 1.240e-19
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 LAQVLDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            +A   D I AQII  LA + P+ AP++G T+IARDLGLDSVAIMDF+MELEERFDILIP
Sbjct:    1 MAHKADEIAAQIIGALAAIAPASAPLSGNTKIARDLGLDSVAIMDFIMELEERFDILIP 59          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A2N3BZR1_9PROT (Acyl carrier protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-3 TaxID=2013666 RepID=A0A2N3BZR1_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 4.380e-13
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   13 LDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            ++ I  +I+ +LA  +P G  ++ E RIARDLGLDSV IMDFVM++E+RFDI IP
Sbjct:    5 VEDIEREILDLLAKQLPEGTQVSAEMRIARDLGLDSVGIMDFVMDIEDRFDISIP 59          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A858R4Z1_9PROT (Acyl carrier protein n=1 Tax=Rhodospirillaceae bacterium B3 TaxID=2728875 RepID=A0A858R4Z1_9PROT)

HSP 1 Score: 62.4 bits (150), Expect = 2.010e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   16 DTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            D I A+II+ L   + S   IT +T I RDLGLDS+A+MDFVM LE+RFDI IP
Sbjct:    6 DEIVAEIIRALGPSLQSPVTITTDTNITRDLGLDSLAVMDFVMVLEDRFDISIP 59          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: UPI001A95CEFD (acyl carrier protein n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95CEFD)

HSP 1 Score: 60.1 bits (144), Expect = 1.730e-10
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   13 LDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILI 174
            LDTI A+IIK +  +      +T +T IARDLGLDS+A+M+FVM LE++FD+ I
Sbjct:    4 LDTIAAEIIKAINALPQVQQSVTQDTNIARDLGLDSLAVMNFVMTLEDQFDVSI 57          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A239ANF3_9PROT (Acyl carrier protein n=3 Tax=Azospirillaceae TaxID=2829815 RepID=A0A239ANF3_9PROT)

HSP 1 Score: 59.7 bits (143), Expect = 2.330e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   13 LDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            L+ I  +II  L   +P+   IT +T I RDLGLDS+A+MDFVM LE++FD+ IP
Sbjct:    5 LNEIVEEIITALGSTLPTPVTITTDTSITRDLGLDSLAVMDFVMVLEDKFDVSIP 59          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A8J7M9U1_9RHOB (Carrier domain-containing protein n=1 Tax=Thermohalobaculum xanthum TaxID=2753746 RepID=A0A8J7M9U1_9RHOB)

HSP 1 Score: 58.9 bits (141), Expect = 4.580e-10
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   16 DTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            D I A+I+ +L+  V S   +T ET I  D GLDSV++MDFV+ELE+ FDI IP
Sbjct:    5 DEIEARILDLLSAKVKSETAVTRETNIVADTGLDSVSVMDFVLELEDEFDINIP 58          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A0N0K9V0_9PROT (Acyl carrier protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N0K9V0_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 6.660e-10
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   10 VLDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            +++TI A ++K L    P+   +T ET I RDLGLDS+A+MDFVM LE++FD+ IP
Sbjct:    8 IVETIIAALVKTL----PTPVTVTTETSITRDLGLDSLAVMDFVMVLEDKFDVSIP 59          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: B6IRU2_RHOCS (Conserved domain protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) TaxID=414684 RepID=B6IRU2_RHOCS)

HSP 1 Score: 58.2 bits (139), Expect = 9.450e-10
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   16 DTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            D I  +I++ L   +  G  IT ET I RDLGLDS+A+M+FVM LE++FD+ IP
Sbjct:    6 DAIIEEIVRALGPNLTPGVVITPETNITRDLGLDSLAVMNFVMVLEDKFDVSIP 59          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: A0A839V3J0_9PROT (Acyl carrier protein n=2 Tax=Endobacter medicaginis TaxID=1181271 RepID=A0A839V3J0_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 1.550e-9
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:   28 AQIIKVLA-GMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            A++++ L    VP+G  IT ETR+A DL LDS+A+MDFVM LE RFD++IP
Sbjct:   12 AEVVRSLGKAEVPAGLVITDETRLADDLKLDSLAVMDFVMALENRFDLVIP 62          
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Match: UPI000DF46CCE (phosphopantetheine-binding protein n=1 Tax=Oleisolibacter albus TaxID=2171757 RepID=UPI000DF46CCE)

HSP 1 Score: 57.4 bits (137), Expect = 1.900e-9
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   13 LDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMELEERFDILIP 177
            +D I  +II  L   + +   IT +T I RDLGLDS+A+MDFVM LE++FD+ IP
Sbjct:    5 IDEIVTEIIHALGPSLQAPVTITPDTSITRDLGLDSLAVMDFVMVLEDKFDVSIP 59          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11876.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TYL3_9PROT1.240e-1969.49Acyl carrier protein n=1 Tax=Alphaproteobacteria b... [more]
A0A2N3BZR1_9PROT4.380e-1356.36Acyl carrier protein n=1 Tax=Alphaproteobacteria b... [more]
A0A858R4Z1_9PROT2.010e-1159.26Acyl carrier protein n=1 Tax=Rhodospirillaceae bac... [more]
UPI001A95CEFD1.730e-1053.70acyl carrier protein n=1 Tax=Azospirillum sp. SYSU... [more]
A0A239ANF3_9PROT2.330e-1052.73Acyl carrier protein n=3 Tax=Azospirillaceae TaxID... [more]
A0A8J7M9U1_9RHOB4.580e-1053.70Carrier domain-containing protein n=1 Tax=Thermoha... [more]
A0A0N0K9V0_9PROT6.660e-1051.79Acyl carrier protein n=3 Tax=Alphaproteobacteria T... [more]
B6IRU2_RHOCS9.450e-1051.85Conserved domain protein n=1 Tax=Rhodospirillum ce... [more]
A0A839V3J0_9PROT1.550e-956.86Acyl carrier protein n=2 Tax=Endobacter medicagini... [more]
UPI000DF46CCE1.900e-950.91phosphopantetheine-binding protein n=1 Tax=Oleisol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11876contigP-wetherbeei_contig11876:1904..2080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog414684.RC1_0747
PFAMsPP-binding
Model size177
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-10
EggNOG OGsCOG0236@1|root,COG0236@2|Bacteria,1NHQD@1224|Proteobacteria,2UGSG@28211|Alphaproteobacteria,2JUKH@204441|Rhodospirillales
DescriptionPhosphopantetheine attachment site
Cds size177
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185929.516361-CDS-P-wetherbeei_contig11876:1903..20801683185929.516361-CDS-P-wetherbeei_contig11876:1903..2080Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11876 1904..2080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11876.2.1prot_P-wetherbeei_contig11876.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11876 1904..2080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11876.2.1

>prot_P-wetherbeei_contig11876.2.1 ID=prot_P-wetherbeei_contig11876.2.1|Name=mRNA_P-wetherbeei_contig11876.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
LAQVLDTIGAQIIKVLAGMVPSGAPITGETRIARDLGLDSVAIMDFVMEL
EERFDILIP
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mRNA from alignment at P-wetherbeei_contig11876:1904..2080+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11876.2.1 ID=mRNA_P-wetherbeei_contig11876.2.1|Name=mRNA_P-wetherbeei_contig11876.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig11876:1904..2080+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGCAGGTGCTGGACACGATTGGGGCACAGATCATTAAAGTGCTGGC AGGGATGGTTCCGTCAGGGGCTCCGATAACCGGAGAAACCCGGATTGCGC GCGACCTTGGGCTTGATTCAGTGGCCATCATGGACTTCGTGATGGAGCTG GAAGAGCGCTTCGATATTCTGATACCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11876:1904..2080+

>mRNA_P-wetherbeei_contig11876.2.1 ID=mRNA_P-wetherbeei_contig11876.2.1|Name=mRNA_P-wetherbeei_contig11876.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig11876:1904..2080+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCGCAGGTGCTGGACACGATTGGGGCACAGATCATTAAAGTGCTGGC
AGGGATGGTTCCGTCAGGGGCTCCGATAACCGGAGAAACCCGGATTGCGC
GCGACCTTGGGCTTGATTCAGTGGCCATCATGGACTTCGTGATGGAGCTG
GAAGAGCGCTTCGATATTCTGATACCG
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