mRNA_P-wetherbeei_contig11860.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11860.2.1
Unique NamemRNA_P-wetherbeei_contig11860.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: UPI0014589FA2 (uncharacterized protein LOC117326402 isoform X1 n=3 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589FA2)

HSP 1 Score: 118 bits (296), Expect = 1.580e-27
Identity = 71/168 (42.26%), Postives = 96/168 (57.14%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEE-ASRGESITNAVEAAAVTELVRWTLRDARAPADAGARPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANR 525
            RCHP++S L++ LFY G+++DGV  +DR PL P   +P L F DV+ G+E A  G S  N  EA  VT L++  L     PA  G   + K   F  ++S                ++STVDAFQG E D+I+L+  RT  +GF    +R NVALTRARHHL +V N+
Sbjct: 2442 RCHPVISNLANTLFYDGRLSDGVTTSDREPLVP--EVPTLCFYDVSKGQEQADDGGSFYNEKEAVFVTSLIQALLVRGVEPASIGVITLYKSQMFKINTSLLTNVQSNDCKEIKATRVSTVDAFQGGEHDIIILSCVRTNGVGFIDNHKRTNVALTRARHHLLIVGNK 2607          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: UPI00106DA0C9 (protein ZGRF1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106DA0C9)

HSP 1 Score: 115 bits (288), Expect = 2.870e-27
Identity = 72/176 (40.91%), Postives = 99/176 (56.25%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASG-EEASRGESITNAVEAAAVTELVRWTLRDARAPADAG--ARPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQPD 543
            RCHP++S +S+RLFY  Q+ DGV A +R PL     +P L F DVA+G EE S+  S  N  EA  V  L++  L     P   G  ++  ++L +   S S               +QISTVDAFQG E+DVI+L+  RT+ +GF  C  R NVALTRA+ HL +V   ++L  +
Sbjct:   11 RCHPLISSISNRLFYNDQLLDGVNAEERKPLVD--FIPTLCFYDVANGKEECSQDGSYFNTSEAKFVVTLIKSLLESEIEPKQIGVISQYKSQLTAINNSLSADGATSQKELAG---IQISTVDAFQGGEKDVIILSCVRTKHIGFIDCERRTNVALTRAKRHLCIVGRGKMLSSN 181          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: UPI001CF0F069 (protein ZGRF1-like isoform X1 n=5 Tax=Acropora TaxID=6127 RepID=UPI001CF0F069)

HSP 1 Score: 117 bits (292), Expect = 5.290e-27
Identity = 72/171 (42.11%), Postives = 94/171 (54.97%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEASRGE-SITNAVEAAAVTELVRWTLRDARAPADAGARPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLL 534
            RCHP +S +S+RLFYG ++ DGV A DRPPL     +P L F +VA G+EA   + S  N  EA  V  L+   L     PA  G   + K       S+               +QISTVDAFQG E+DVI+L+  RT  +GF  C  R NVALTRA+ HL ++ N ++L
Sbjct: 1429 RCHPTISAISNRLFYGNKLLDGVTAEDRPPLVDL--VPTLCFYNVAKGKEACGSDGSYYNEAEANFVVFLIECLLHYGVLPAQIGVITLYKS-QLHTISNNLTASRASSHSELKSIQISTVDAFQGGEKDVIILSCVRTDHIGFIDCDRRTNVALTRAKRHLLIIGNLKML 1596          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: A0A1S3IUM2_LINUN (protein ZGRF1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IUM2_LINUN)

HSP 1 Score: 115 bits (289), Expect = 1.010e-26
Identity = 76/177 (42.94%), Postives = 98/177 (55.37%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEA-SRGESITNAVEAAAVTELVRWTLRDARAPADAGA-----RPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQ 537
            RCHP +S ++S LFYGG + DGV   DR PL      P L FIDV+ G+EA  R +SI N  E A V  L++  L +   PA  G        VAK+     +SS               VQISTVDAFQG E+DVI+L+  +T    F  C +R NVALTRA+HHL +V  ++ L+
Sbjct:  305 RCHPRISAMASTLFYGGLLKDGVSEKDREPLMKS--CPPLCFIDVSKGQEARDRLDSIYNKEEEAFVASLLKKLLSEGLKPAQIGVITPFRSQVAKIKKILLASS------INEPSKISAVQISTVDAFQGGEKDVIILSFVKTNNTAFIDCKKRTNVALTRAKHHLLLVGQKQNLE 473          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: UPI001F0472D4 (protein ZGRF1-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F0472D4)

HSP 1 Score: 115 bits (288), Expect = 1.780e-26
Identity = 71/181 (39.23%), Postives = 96/181 (53.04%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEASRGESITNAVEAAAVTELVRWTLRDARAPADAGA--------RPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQPD 543
            RCHP++S +S++LFY  Q+ +GV   DR PL     +P L F DV+ G+E S   S  N  EA  V  L++  L     P   G           ++ L S  G+SS               VQISTVDAFQG E+D+I+L+  RTR +GF  C  R N+ALTRA+ HL +V  R +L  +
Sbjct: 1075 RCHPLISSISNKLFYDNQLLNGVTEDDRKPLVD--FIPTLCFYDVSKGQECSSNGSYFNTDEAKFVVVLIKSLLSSNVQPGQIGVISQYKSQLTSISNLLSSNGTSS---------QREYSGVQISTVDAFQGGEKDIIILSCVRTRHIGFIDCRRRTNIALTRAKRHLCIVGCRTMLSSN 1244          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: UPI00148AC092 (uncharacterized protein LOC105346918 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AC092)

HSP 1 Score: 115 bits (288), Expect = 1.860e-26
Identity = 75/181 (41.44%), Postives = 99/181 (54.70%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEASRGE-SITNAVEAAAVTELVRWTLRDARAPADAGARPVAK------LFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQPDH 546
            RCHP++S L++ LFY GQ+ DG+  ADR P+     LP L F DV++G+E+S    S +N  EA  V+ L+   L      A  G   + K      L   G S +               V +STVDAFQG ERD+I+L+  RT   GF    +R NVALTRARHHLF+V N R L+ +H
Sbjct: 2151 RCHPVISDLANSLFYQGQLLDGIQGADREPVLDI--LPTLCFYDVSNGQESSDSSGSFSNEKEADFVSFLIEVLLNAGVDAASIGVITLYKSQMYSILVKLGTSRN-------CSQKDTKSVLVSTVDAFQGGERDIIILSCVRTNNTGFIDNHKRTNVALTRARHHLFIVGNMRNLEKNH 2322          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: A0A1S3HNJ9_LINUN (protein ZGRF1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HNJ9_LINUN)

HSP 1 Score: 115 bits (287), Expect = 2.320e-26
Identity = 75/177 (42.37%), Postives = 97/177 (54.80%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEA-SRGESITNAVEAAAVTELVRWTLRDARAPADAGA-----RPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQ 537
            RCHP +S ++S LFYGG + DGV   DR PL      P L FIDV+ G+EA +R  SI N  EAA V  L++  L +   PA  G        VAK+     +                 VQISTVDAFQG E+DVI+L+  +T    F  C +R NVALTRA+HHL +V  ++ L+
Sbjct:  612 RCHPRISAMASTLFYGGLLKDGVSEKDREPLMKS--CPPLCFIDVSKGQEAWNRLGSIYNKEEAAFVASLLKKLLSEGLKPAQIGVITPFRSQVAKI-----NKEILLASSVNEPSKISAVQISTVDAFQGGEKDVIILSFVKTNNTAFIDCKKRTNVALTRAKHHLLLVGQKQNLE 781          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: A0A671FUX9_RHIFE (AAA_12 domain-containing protein n=2 Tax=Rhinolophus ferrumequinum TaxID=59479 RepID=A0A671FUX9_RHIFE)

HSP 1 Score: 109 bits (273), Expect = 2.480e-26
Identity = 65/174 (37.36%), Postives = 94/174 (54.02%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEASRGESITNAVEAAAVTELVRWTLRDARAPADAGARPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQPDH 546
            RCHP +S +++ LFY G + +GV  A+R PL     LP L F  V+  E+  RG S  NA EAA   +L++  +    A +  G   + K   +                    VQ+STVDAFQG E+++I+L+  RTR++GF    +R+NVALTR R HL +V N   L+ +H
Sbjct:   13 RCHPAISAVANDLFYAGNLRNGVSEAERGPLV--AWLPTLCFYHVSGAEQIERGSSFHNAAEAAFTLKLIQSLIASGVAGSVIGVITLYKAQMY--KLCHLLSAVDFDQPEVRAVQVSTVDAFQGAEKEIIILSCVRTRQVGFIDSEKRMNVALTRGRRHLLIVGNLACLRKNH 182          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: A0A8C3NKF8_GEOPR (AAA_12 domain-containing protein n=4 Tax=Thraupidae TaxID=400783 RepID=A0A8C3NKF8_GEOPR)

HSP 1 Score: 108 bits (271), Expect = 4.000e-26
Identity = 67/168 (39.88%), Postives = 87/168 (51.79%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEEASRGESITNAVEAAAVTELVRWTLRDARAPADAGARPVAK--LFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVAN 522
            RCHP LS +++ LFYGG + DG+   DR PL     LP L F  V   E+  R  S  N  EA    +L++  +      AD G   + K  +F      SG              VQ+STVDAFQG ER++IVL+  RTR  GF     R+NVALTRA+ HL +V +
Sbjct:   13 RCHPALSAIANELFYGGHLIDGISQGDRAPLLEW--LPTLCFYSVHGMEQIERDNSFYNMAEAHFTVKLIQSLIASGIEGADIGVITLYKSQMFKIQNLLSGVHSEAFEVKP----VQVSTVDAFQGAEREIIVLSCVRTRHFGFIDSERRMNVALTRAKRHLLIVGS 174          
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Match: UPI00109B9A8D (protein ZGRF1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B9A8D)

HSP 1 Score: 113 bits (283), Expect = 7.840e-26
Identity = 71/174 (40.80%), Postives = 93/174 (53.45%), Query Frame = 1
Query:   25 RCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVFIDVASGEE-ASRGESITNAVEAAAVTELVRWTLRDARAPADAGARPVAKLFSFGGSSSGXXXXXXXXXXXXPDVQISTVDAFQGEERDVIVLTACRTRKMGFAACPERLNVALTRARHHLFVVANRRLLQPD 543
            RCHP++S +++RLFYGG++ +GV   DR PL      P L F DV  G+E   +  S  N  EA  +  L+   L     PA  G   + K       SS               VQISTVDAFQG E+DVI+L+  RT  +GF  C  R NVALTRA+ HL +V N+R+L  +
Sbjct:  248 RCHPVISAVANRLFYGGRLTNGVSEEDRAPLVE--FAPTLCFYDVTKGKEKCGQDGSYYNEEEAKFIVFLIECFLESGLEPAQIGVITLYKS-QLRTISSYITQSERASLKQLKSVQISTVDAFQGGEKDVILLSCVRTDHVGFIDCDRRTNVALTRAKRHLLIVGNQRMLSSN 418          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11860.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0014589FA21.580e-2742.26uncharacterized protein LOC117326402 isoform X1 n=... [more]
UPI00106DA0C92.870e-2740.91protein ZGRF1-like n=1 Tax=Dendronephthya gigantea... [more]
UPI001CF0F0695.290e-2742.11protein ZGRF1-like isoform X1 n=5 Tax=Acropora Tax... [more]
A0A1S3IUM2_LINUN1.010e-2642.94protein ZGRF1-like n=1 Tax=Lingula unguis TaxID=75... [more]
UPI001F0472D41.780e-2639.23protein ZGRF1-like n=1 Tax=Xenia sp. Carnegie-2017... [more]
UPI00148AC0921.860e-2641.44uncharacterized protein LOC105346918 isoform X1 n=... [more]
A0A1S3HNJ9_LINUN2.320e-2642.37protein ZGRF1-like n=1 Tax=Lingula unguis TaxID=75... [more]
A0A671FUX9_RHIFE2.480e-2637.36AAA_12 domain-containing protein n=2 Tax=Rhinoloph... [more]
A0A8C3NKF8_GEOPR4.000e-2639.88AAA_12 domain-containing protein n=4 Tax=Thraupida... [more]
UPI00109B9A8D7.840e-2640.80protein ZGRF1 n=1 Tax=Exaiptasia diaphana TaxID=26... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11860contigP-wetherbeei_contig11860:8..922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog5722.XP_001318327.1
PFAMsAAA_11,AAA_12,DUF2439,zf-GRF
Model size552
Max annot lvl2759|Eukaryota
KEGG koko:K10706,ko:K14326
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-24
EggNOG OGsCOG1112@1|root,KOG1802@2759|Eukaryota
Descriptionnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Cds size552
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.9410875-CDS-P-wetherbeei_contig11860:7..2631683185928.9410875-CDS-P-wetherbeei_contig11860:7..263Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11860 8..263 -
1683185928.9576259-CDS-P-wetherbeei_contig11860:626..9221683185928.9576259-CDS-P-wetherbeei_contig11860:626..922Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11860 627..922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11860.2.1prot_P-wetherbeei_contig11860.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11860 8..922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11860.2.1

>prot_P-wetherbeei_contig11860.2.1 ID=prot_P-wetherbeei_contig11860.2.1|Name=mRNA_P-wetherbeei_contig11860.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
SFQNLFLGRCHPMLSGLSSRLFYGGQVADGVGAADRPPLFPCTHLPALVF
IDVASGEEASRGESITNAVEAAAVTELVRWTLRDARAPADAGARPVAKLF
SFGGSSSGRGSGQGSGSGNGPDVQISTVDAFQGEERDVIVLTACRTRKMG
FAACPERLNVALTRARHHLFVVANRRLLQPDHN*
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mRNA from alignment at P-wetherbeei_contig11860:8..922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11860.2.1 ID=mRNA_P-wetherbeei_contig11860.2.1|Name=mRNA_P-wetherbeei_contig11860.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig11860:8..922- (Phaeothamnion wetherbeei SAG_119_79)
TCTTTTCAAAACCTTTTCCTTGGCAGATGCCACCCGATGCTGTCTGGACT GTCGTCGCGCCTCTTCTACGGCGGGCAGGTCGCCGATGGCGTCGGCGCGG CGGACCGGCCGCCGCTCTTTCCGTGCACCCACCTGCCGGCGCTGGTCTTC ATCGACGTGGCGTCGGGCGAAGAGGCGTCTCGCGGCGAGAGCATCACCAA CGCGGTCGAGGCGGCGGCGGTCACCGAGCTGGTGCGCTGGACTCTGCGGG ACGCGCGAGCCCCCGCCGATGCCGGAGCGCGGCCAGTGGCGAAGCTGTCG GCGCCGGGTCGGCTCGGGGGAGCTGCATCGGGGCCAAAGCGTGGCGGCGA CAGCAGCCGCAGCAGCGGACCGAGCGGCGTTGGCGGCAGGGACGACGGCG ACGACGGCGACCGCGGCTCGACCGCCGAGGCCGCTGTAGAGAGGAACCTG GGACCGCCGACCGTCGGCGTCATTTGCCTCTATCGCGCGCAATGTTGGGC CGTCCAAGACCGTCTGAGCGCCGAGGTTGGCTCCTCTGTGACCCGTGTCT GCCTGACCGCCGAAGAGGACGCCGCCAGCGAATGCAGCGACGCGGGCGGC GACGGTGACAGCAGCGGCAGCGGCAGCAGCCTCGGCGGGAATAACGGCTG CGGTGGCAGCTTCAGCTTTGGCGGTAGCAGCAGCGGCAGAGGAAGCGGCC AAGGAAGTGGCAGCGGCAACGGGCCCGACGTGCAGATCAGCACCGTCGAC GCGTTTCAGGGCGAGGAACGAGACGTGATCGTGCTGACGGCTTGCCGCAC CCGCAAGATGGGCTTCGCGGCGTGCCCCGAGCGCCTCAACGTCGCCCTGA CACGAGCACGCCACCACCTCTTTGTCGTCGCCAACCGGCGCCTTCTCCAG CCGGACCACAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11860:8..922-

>mRNA_P-wetherbeei_contig11860.2.1 ID=mRNA_P-wetherbeei_contig11860.2.1|Name=mRNA_P-wetherbeei_contig11860.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig11860:8..922- (Phaeothamnion wetherbeei SAG_119_79)
TCTTTTCAAAACCTTTTCCTTGGCAGATGCCACCCGATGCTGTCTGGACT
GTCGTCGCGCCTCTTCTACGGCGGGCAGGTCGCCGATGGCGTCGGCGCGG
CGGACCGGCCGCCGCTCTTTCCGTGCACCCACCTGCCGGCGCTGGTCTTC
ATCGACGTGGCGTCGGGCGAAGAGGCGTCTCGCGGCGAGAGCATCACCAA
CGCGGTCGAGGCGGCGGCGGTCACCGAGCTGGTGCGCTGGACTCTGCGGG
ACGCGCGAGCCCCCGCCGATGCCGGAGCGCGGCCAGTGGCGAAGCTCTTC
AGCTTTGGCGGTAGCAGCAGCGGCAGAGGAAGCGGCCAAGGAAGTGGCAG
CGGCAACGGGCCCGACGTGCAGATCAGCACCGTCGACGCGTTTCAGGGCG
AGGAACGAGACGTGATCGTGCTGACGGCTTGCCGCACCCGCAAGATGGGC
TTCGCGGCGTGCCCCGAGCGCCTCAACGTCGCCCTGACACGAGCACGCCA
CCACCTCTTTGTCGTCGCCAACCGGCGCCTTCTCCAGCCGGACCACAACT
GA
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