mRNA_P-wetherbeei_contig1186.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1186.1.1
Unique NamemRNA_P-wetherbeei_contig1186.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1186.1.1 vs. uniprot
Match: D8LIH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIH0_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.050e-38
Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = 3 
Query:  216 KQRPGKGLTCWDLNEKCTLDCLMPAAPEVPIGNADVMSACLQGCADTASVCVDSKDTVAYVKCAYGCAARYDAALMACLEGVSETAVGTYGVGLDACSNLAAGEMDDCMDACYGADRYGDWTPEAEEG----GRAVHGINGEQWRRPFRDPAVVYGSQR 680
            ++ PGKG+TCWD  E C L+C+     E    N   ++ C  GC  + + C DS +T+AYV+CA  C   YD +L  C + VS+    TYG  LDAC+N+A+G MDDCM+ CYG DR+  WTP  EEG    G  + G++   WRRPFR  +V+YG  R
Sbjct:   30 QEMPGKGMTCWDKRELCDLNCVYATTAEDEDFN---LTDCSTGCVTSQASCTDSAETLAYVECAKDCTLTYDGSLTKCNQKVSDQTKNTYGANLDACANIASGIMDDCMEDCYGEDRFNGWTPMKEEGKDANGIDLPGLDDGVWRRPFRSESVIYGRLR 185
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BLAST of mRNA_P-wetherbeei_contig1186.1.1 vs. uniprot
Match: A0A835YM51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM51_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.390e-36
Identity = 78/161 (48.45%), Postives = 98/161 (60.87%), Query Frame = 3 
Query:  216 KQRPGKGLTCWDLNEKCTLDCLMPAAPEVPIGNADV----MSACLQGCADTASVCVDSKDTVAYVKCAYGCAARYDAALMACLEGVSETAVGTYGVGLDACSNLAAGEMDDCMDAC-YGAD----RYGDWTPEAEEGGRAVHGINGEQWRRPFRDPAVVYG 671
            ++ PGKG+ C D  E C+L+CL+P+A  + +    V    +++CL  C    + C D+ D   Y+ CA  CA  YD AL ACL+  S T VGTYG   DAC+NLAA  MD+CM AC YGAD    RYG W+PE E G R      G Q+RRPFRDP VVYG
Sbjct:   20 QEMPGKGMGCSDKQELCSLNCLLPSAGTMDLSGVTVTRDDLNSCLDVCDKDLTQCKDTPDNTKYIDCATVCAKTYDVALNACLQAASATTVGTYGTSQDACANLAAAPMDECMSACFYGADAAQDRYGAWSPEREAGHRIASLPRG-QFRRPFRDPDVVYG 179
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1186.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH0_ECTSI5.050e-3844.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YM51_9STRA3.390e-3648.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1186contigP-wetherbeei_contig1186:1139..2852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1115
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003700.1
Cds size915
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.8419983-UTR-P-wetherbeei_contig1186:1138..11471683185928.8419983-UTR-P-wetherbeei_contig1186:1138..1147Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1186 1139..1147 -
1683185928.8833165-UTR-P-wetherbeei_contig1186:2661..28521683185928.8833165-UTR-P-wetherbeei_contig1186:2661..2852Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1186 2662..2852 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.8514252-CDS-P-wetherbeei_contig1186:1147..16881683185928.8514252-CDS-P-wetherbeei_contig1186:1147..1688Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1186 1148..1688 -
1683185928.8598468-CDS-P-wetherbeei_contig1186:2077..22411683185928.8598468-CDS-P-wetherbeei_contig1186:2077..2241Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1186 2078..2241 -
1683185928.868775-CDS-P-wetherbeei_contig1186:2451..26611683185928.868775-CDS-P-wetherbeei_contig1186:2451..2661Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1186 2452..2661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1186.1.1prot_P-wetherbeei_contig1186.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1186 1148..2661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1186.1.1

>prot_P-wetherbeei_contig1186.1.1 ID=prot_P-wetherbeei_contig1186.1.1|Name=mRNA_P-wetherbeei_contig1186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=305bp
MPPSFYGEKQRPGKGLTCWDLNEKCTLDCLMPAAPEVPIGNADVMSACLQ
GCADTASVCVDSKDTVAYVKCAYGCAARYDAALMACLEGVSETAVGTYGV
GLDACSNLAAGEMDDCMDACYGADRYGDWTPEAEEGGRAVHGINGEQWRR
PFRDPAVVYGSQRVLTPVSDAARVTAASEATGAAATEEAAAVAEGASDDA
AATDKAFLELPGAGEERLAAVVGGAPGGGGTSGAFGGNDGGSRMSVVAIL
ASAAAVTMTILGLGMLALRQLSKGDADADADAEGEGKSREERLQQQSRRR
ELYL*
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mRNA from alignment at P-wetherbeei_contig1186:1139..2852-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1186.1.1 ID=mRNA_P-wetherbeei_contig1186.1.1|Name=mRNA_P-wetherbeei_contig1186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1714bp|location=Sequence derived from alignment at P-wetherbeei_contig1186:1139..2852- (Phaeothamnion wetherbeei SAG_119_79)
CCTGTTGCACCTAAGAGAGACCATGGGCCGAGTACGTGTCCCTGCCGTCG
CCATGCTTCTCGCGGCGAGCGGGGCCAATGCACAAGAGGTGAGAGATCCG
GCTCGCACCGATATTTTCCCTGTTTCCTTCTCCGTGCACTTTTCTTTCGC
GTTTTCCCTTTACCCTTGACAATTTCGCGCTCTTGCATACGATGCCACCT
TCATTTTACGGGGAAAAACAGCGTCCTGGGAAGGGGCTCACCTGCTGGGA
TCTCAATGAGAAGTGCACCTTAGATTGTTTGATGCCTGCGGCGCCGGAGG
TGCCCATTGGAAACGCCGACGTCATGTCAGCGTGTCTGCAAGGCTGCGCC
GACACAGCCAGCGTCTGCGTCGACAGCAAGGATACCGTCGCATACGTCAA
GGTGTGCTCGAGGAACGAAGGTGGACTTTTTTTGCCATGAAGGAGTTTGC
AGGATCTCTTTGCCGACCTTACGCAAAGTGTAGTCATACCAAAATGCAGT
GTTCTTGCAGCAACATTTTACACGCTGATTCGGCAGTCTTACCTATCACC
AAACACTCCCTTCCCGCTTTCCGCCATCGCCGCTGCCCTTTTGTCGCCCC
GGCCGCCGCAGTGCGCGTACGGGTGCGCGGCGCGGTATGACGCGGCGCTG
ATGGCGTGCTTGGAGGGCGTGTCGGAGACGGCGGTGGGCACGTACGGCGT
TGGGCTCGATGCGTGCTCCAACCTCGCCGCGGGGGAGATGGACGACTGCA
TGGACGCCTGCTACGGTGCCGACCGGTGAGACGTGAAGAAGGAGAAAGAG
GCGCTTGCCGTTTCCGTTTCGCCATTTCAGAAAAGTGTGCGCTTCTCTCT
TGTTCGGCGCCGTTTGGTGCAGCTCCTCTTCTTTGGTGTCGTCCAAAGCC
CAAAGCGCAGGTTAAATAAATCTTTTTCATTTTGAATATTTCGCCGTAAT
GTTGGGGTGAAACTGAAGCGGGAAACCCCGCTGATAAAGACAATCCTCCG
ACTGGTCATCGATTGAAGCGTTTCCTTTGCTCTCATCCCCCTCTTTCATG
ACTTGTTTGCGTTCTCGTTTTGTCCAACGACGCTCATTTCCTTTGCTTCG
CTGGCTCCCCTCCATAATTTCCACGTCGGAACGATGGGCTCGGTTCATAT
TGTCGACCGATCAGGTACGGAGACTGGACCCCCGAGGCGGAAGAGGGCGG
TCGCGCCGTCCACGGCATTAACGGGGAGCAGTGGCGCCGCCCTTTCCGCG
ACCCAGCCGTTGTCTACGGCTCCCAGCGCGTCCTCACGCCCGTGTCAGAC
GCGGCGAGGGTTACGGCAGCATCAGAGGCCACAGGAGCAGCCGCGACAGA
AGAAGCGGCGGCGGTGGCGGAGGGAGCTTCGGACGATGCGGCGGCGACGG
ACAAGGCGTTCCTTGAGTTGCCGGGGGCTGGTGAGGAGCGGCTGGCGGCG
GTGGTGGGCGGAGCTCCGGGCGGCGGCGGCACCAGCGGGGCTTTCGGCGG
AAACGACGGCGGCAGCCGAATGAGCGTGGTCGCGATCCTGGCGTCGGCGG
CGGCGGTGACCATGACCATCCTCGGGCTGGGCATGCTGGCGCTGCGGCAG
CTCAGCAAGGGTGACGCCGACGCCGACGCCGACGCCGAGGGGGAAGGAAA
ATCGCGCGAGGAGCGGCTGCAGCAGCAGAGCCGGCGTAGGGAGCTCTACC
TCTGAGTGAGGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1186:1139..2852-

>mRNA_P-wetherbeei_contig1186.1.1 ID=mRNA_P-wetherbeei_contig1186.1.1|Name=mRNA_P-wetherbeei_contig1186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig1186:1139..2852- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCACCTTCATTTTACGGGGAAAAACAGCGTCCTGGGAAGGGGCTCAC
CTGCTGGGATCTCAATGAGAAGTGCACCTTAGATTGTTTGATGCCTGCGG
CGCCGGAGGTGCCCATTGGAAACGCCGACGTCATGTCAGCGTGTCTGCAA
GGCTGCGCCGACACAGCCAGCGTCTGCGTCGACAGCAAGGATACCGTCGC
ATACGTCAAGTGCGCGTACGGGTGCGCGGCGCGGTATGACGCGGCGCTGA
TGGCGTGCTTGGAGGGCGTGTCGGAGACGGCGGTGGGCACGTACGGCGTT
GGGCTCGATGCGTGCTCCAACCTCGCCGCGGGGGAGATGGACGACTGCAT
GGACGCCTGCTACGGTGCCGACCGGTACGGAGACTGGACCCCCGAGGCGG
AAGAGGGCGGTCGCGCCGTCCACGGCATTAACGGGGAGCAGTGGCGCCGC
CCTTTCCGCGACCCAGCCGTTGTCTACGGCTCCCAGCGCGTCCTCACGCC
CGTGTCAGACGCGGCGAGGGTTACGGCAGCATCAGAGGCCACAGGAGCAG
CCGCGACAGAAGAAGCGGCGGCGGTGGCGGAGGGAGCTTCGGACGATGCG
GCGGCGACGGACAAGGCGTTCCTTGAGTTGCCGGGGGCTGGTGAGGAGCG
GCTGGCGGCGGTGGTGGGCGGAGCTCCGGGCGGCGGCGGCACCAGCGGGG
CTTTCGGCGGAAACGACGGCGGCAGCCGAATGAGCGTGGTCGCGATCCTG
GCGTCGGCGGCGGCGGTGACCATGACCATCCTCGGGCTGGGCATGCTGGC
GCTGCGGCAGCTCAGCAAGGGTGACGCCGACGCCGACGCCGACGCCGAGG
GGGAAGGAAAATCGCGCGAGGAGCGGCTGCAGCAGCAGAGCCGGCGTAGG
GAGCTCTACCTCTGA
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