mRNA_P-wetherbeei_contig11855.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11855.2.1
Unique NamemRNA_P-wetherbeei_contig11855.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11855.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11855contigP-wetherbeei_contig11855:25..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.7745945-UTR-P-wetherbeei_contig11855:24..2191683185928.7745945-UTR-P-wetherbeei_contig11855:24..219Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11855 25..219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.7843888-CDS-P-wetherbeei_contig11855:219..5911683185928.7843888-CDS-P-wetherbeei_contig11855:219..591Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11855 220..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11855.2.1prot_P-wetherbeei_contig11855.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11855 220..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11855.2.1

>prot_P-wetherbeei_contig11855.2.1 ID=prot_P-wetherbeei_contig11855.2.1|Name=mRNA_P-wetherbeei_contig11855.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MQLRLFCGFSDFYFFNKLFKKAKKEEKRQSRSGFPLCRGRLLLPGWHLFS
SLGRMQFGPEGCCLAALQYAPCKAFLPLIVERRLFSRHAGCSLPLMLATP
SCNGLRPGSRISNPSAPLRPSAFS
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mRNA from alignment at P-wetherbeei_contig11855:25..591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11855.2.1 ID=mRNA_P-wetherbeei_contig11855.2.1|Name=mRNA_P-wetherbeei_contig11855.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig11855:25..591+ (Phaeothamnion wetherbeei SAG_119_79)
GACGGAGGGGATGCGTGATGTTGCCCACAAGGGCCGGTGAGTGTTGGGGA
ATTCTCTTCGCGTGCCTTTTTCGTTCCTTTGTCTTCTCTTTCGTTCTTTC
TTTTTCTCTTCTTTGGAGGCGGTGCGTCCATCCGTTCGCCCGCTTTCACA
GTATCACGGAATTTTGCTTGTCTGCTGGTGCGCGTAACATGTTTGATGCA
GTTGCGTCTCTTTTGCGGGTTTTCTGATTTCTATTTCTTCAATAAGTTAT
TCAAGAAGGCCAAGAAAGAAGAGAAACGACAATCGCGTTCCGGCTTTCCA
TTGTGCCGAGGGCGGTTGCTGCTGCCAGGGTGGCATCTCTTTTCTTCTCT
TGGACGCATGCAGTTTGGGCCCGAGGGGTGTTGCTTGGCCGCTCTTCAGT
ATGCGCCATGCAAAGCTTTTCTGCCTTTGATTGTTGAAAGGCGCCTTTTT
AGTCGGCACGCCGGCTGCTCGTTGCCTTTGATGCTAGCCACTCCTTCGTG
CAACGGTCTTCGCCCAGGCTCTCGTATATCTAACCCCTCTGCGCCTCTGC
GTCCGTCTGCCTTTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11855:25..591+

>mRNA_P-wetherbeei_contig11855.2.1 ID=mRNA_P-wetherbeei_contig11855.2.1|Name=mRNA_P-wetherbeei_contig11855.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig11855:25..591+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGTTGCGTCTCTTTTGCGGGTTTTCTGATTTCTATTTCTTCAATAA
GTTATTCAAGAAGGCCAAGAAAGAAGAGAAACGACAATCGCGTTCCGGCT
TTCCATTGTGCCGAGGGCGGTTGCTGCTGCCAGGGTGGCATCTCTTTTCT
TCTCTTGGACGCATGCAGTTTGGGCCCGAGGGGTGTTGCTTGGCCGCTCT
TCAGTATGCGCCATGCAAAGCTTTTCTGCCTTTGATTGTTGAAAGGCGCC
TTTTTAGTCGGCACGCCGGCTGCTCGTTGCCTTTGATGCTAGCCACTCCT
TCGTGCAACGGTCTTCGCCCAGGCTCTCGTATATCTAACCCCTCTGCGCC
TCTGCGTCCGTCTGCCTTTTCC
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