mRNA_P-wetherbeei_contig11851.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig11851.1.1
Unique NamemRNA_P-wetherbeei_contig11851.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 8.840e-14
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 3 
Query:   15 EEGGRAGLSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLEQTGADYHL 266
            E+   A +S+ A  AE+D ++ ++L GML N  +LP ++IHN LKMFMS G+ KY++S+PEL Q L RL   GKLEQ   +Y L
Sbjct:  380 EDNTEAAVSADANDAESDKIIVQFLTGMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRL 463
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: D8LNH8_ECTSI (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.280e-13
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:   15 EEGGRAGLSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLEQTGADYHL 266
            E+   A +S+ A  AE+D ++ ++L GML N  +LP ++IHN LKMFMS G+ KY++S+PEL Q L RL   GKLE    +Y L
Sbjct:  211 EDNTEAAVSADANDAESDKIIVQFLTGMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEHADGEYRL 294
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A7S0GLJ3_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLJ3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.490e-9
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:    6 EEEEEGGRAGLSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLE 242
            EEE E  +A +++SA +AE   V E Y+ GML+NLG+LP E+IHN+LKMF+S  + KY+++  +L   L++L  + KLE
Sbjct:  371 EEESEDQQAKVAASAQLAEEMKVYESYVVGMLSNLGQLPLERIHNMLKMFVSGSDHKYDKTPQQLSVLLQKLCKEDKLE 449
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A7S0FHF1_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FHF1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.090e-9
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 3 
Query:   12 EEEGGRAGLSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLE 242
            E++G    LS+ A  AE   V E Y+ GMLANLG+LP ++IHN LKMF S  + KY+++  +L  FL++L  + KLE
Sbjct:  165 EDDGEEQALSARAQQAEEMQVYESYIFGMLANLGQLPLDRIHNNLKMFASGSDHKYDKTARQLSSFLQKLCKEEKLE 241
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A7S2WK46_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WK46_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-8
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 3 
Query:   12 EEEGGRAGLSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLE 242
            ++EG    +S  A   E   V E Y+ GML+NLG+LP E+IHN+LKMF++  E KY ++  +L  FL++L    KLE
Sbjct:   46 DDEGEGLAVSLGAEQEEEMQVYESYISGMLSNLGQLPLERIHNMLKMFVTGSEHKYNKTPQQLSIFLQQLCKDEKLE 122
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A7R9ZKL6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKL6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.740e-8
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 3 
Query:   36 LSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLE 242
            +S+SA   E   V E Y+ GML NLG+LP ++IHN+LK F++  + KY ++  +L QFL+RL  Q KLE
Sbjct:  267 VSASAQEEEEMQVYESYIFGMLTNLGQLPLDRIHNMLKTFVAGSDVKYNKTPQQLAQFLQRLCKQEKLE 335
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A2R5GKM1_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKM1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.800e-8
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:   36 LSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLEQTGADYHL 266
            +S+ A +AE   V E +++GML N   L  E+IHN+LKMF+S GE KYE+++ EL  FL +L     LE T   Y L
Sbjct:  728 VSADAQLAEEMKVYESFVRGMLNNYDALTLERIHNMLKMFVSTGEHKYEKNINELEAFLDKLVKDEVLEVTNGSYFL 804
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A7S2SKH5_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SKH5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.080e-6
Identity = 33/88 (37.50%), Postives = 53/88 (60.23%), Query Frame = 3 
Query:    3 GEEEEEGGRAGLSSSAAVAEADAVMERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLEQTGADYHL 266
            G ++E+     +S+ A +     V E +++GML N   LP ++IHN+LKMF+S GE KY++++ +L  FL +L     LE + A Y L
Sbjct:  706 GAQDEDATERAVSADAQLEAEMKVYESFVRGMLNNYESLPLDRIHNMLKMFVSTGEHKYDKNVQQLGAFLDKLVRDDVLEFSNAGYFL 793
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BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: A0A8B7DER5_HYDVU (Anaphase-promoting complex subunit 2 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7DER5_HYDVU)

HSP 1 Score: 58.9 bits (141), Expect = 2.540e-6
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 3 
Query:   84 YLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLEQTGADYHLPPPA 278
            Y+ GML N+G LP E+IH++LKMF +HGE     S+ E+  FL      G+L   G  Y LP  A
Sbjct:  208 YVVGMLTNIGSLPLERIHSMLKMFATHGESSSHCSLEEVKAFLCSKINDGELTYVGGMYKLPKGA 272
[Close]
BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Match: T2M430_HYDVU (Anaphase-promoting complex subunit 2 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2M430_HYDVU)

HSP 1 Score: 58.9 bits (141), Expect = 6.290e-6
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 3 
Query:   84 YLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLAGQGKLEQTGADYHLPPPA 278
            Y+ GML N+G LP E+IH++LKMF +HGE     S+ E+  FL      G+L   G  Y LP  A
Sbjct:  646 YVVGMLTNIGSLPLERIHSMLKMFATHGESSSHCSLEEVKAFLCSKINDGELTYVGGMYKLPKGA 710
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig11851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KJM3_9PHAE8.840e-1448.81Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
D8LNH8_ECTSI1.280e-1347.62Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A7S0GLJ3_9STRA1.490e-946.84Anaphase-promoting complex subunit 2 n=1 Tax=Probo... [more]
A0A7S0FHF1_9STRA5.090e-946.75Anaphase-promoting complex subunit 2 n=1 Tax=Minut... [more]
A0A7S2WK46_9STRA1.290e-844.16Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7R9ZKL6_9STRA4.740e-847.83Anaphase-promoting complex subunit 2 n=1 Tax=Crasp... [more]
A0A2R5GKM1_9STRA8.800e-845.45Anaphase-promoting complex subunit 2 n=1 Tax=Honda... [more]
A0A7S2SKH5_9STRA2.080e-637.50Anaphase-promoting complex subunit 2 n=1 Tax=labyr... [more]
A0A8B7DER5_HYDVU2.540e-644.62Anaphase-promoting complex subunit 2 n=1 Tax=Hydra... [more]
T2M430_HYDVU6.290e-644.62Anaphase-promoting complex subunit 2 n=2 Tax=Hydra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig11851contigP-wetherbeei_contig11851:63..1051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNH8
Preferred nameAPC2
PFAMsANAPC2,Cullin
Model size989
Max annot lvl2759|Eukaryota
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons1
Evalue3.56e-14
EggNOG OGsKOG2165@1|root,KOG2165@2759|Eukaryota
Descriptionubiquitin protein ligase binding
Cds size228
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.658573-UTR-P-wetherbeei_contig11851:62..1361683185928.658573-UTR-P-wetherbeei_contig11851:62..136Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11851 63..136 +
1683185928.6746206-UTR-P-wetherbeei_contig11851:364..10511683185928.6746206-UTR-P-wetherbeei_contig11851:364..1051Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig11851 365..1051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185928.6675289-CDS-P-wetherbeei_contig11851:136..3641683185928.6675289-CDS-P-wetherbeei_contig11851:136..364Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig11851 137..364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig11851.1.1prot_P-wetherbeei_contig11851.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig11851 137..364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig11851.1.1

>prot_P-wetherbeei_contig11851.1.1 ID=prot_P-wetherbeei_contig11851.1.1|Name=mRNA_P-wetherbeei_contig11851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MERYLKGMLANLGRLPAEKIHNLLKMFMSHGEQKYERSMPELVQFLRRLA
GQGKLEQTGADYHLPPPAQQPGSRK*
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mRNA from alignment at P-wetherbeei_contig11851:63..1051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig11851.1.1 ID=mRNA_P-wetherbeei_contig11851.1.1|Name=mRNA_P-wetherbeei_contig11851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=989bp|location=Sequence derived from alignment at P-wetherbeei_contig11851:63..1051+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGGGAGGAGGAAGAGGAGGGCGGCCGGGCGGGGCTATCGTCGTCAGCG
GCGGTGGCCGAGGCAGATGCGGTCATGGAGCGGTATCTGAAGGGCATGCT
GGCGAATTTGGGACGGCTGCCAGCCGAGAAGATTCATAACTTGTTAAAGA
TGTTCATGAGTCACGGGGAACAAAAATACGAGAGGTCGATGCCGGAGCTG
GTGCAGTTCCTGCGCCGGCTGGCGGGTCAGGGAAAGCTAGAGCAGACGGG
AGCGGATTACCACCTGCCGCCGCCGGCGCAGCAGCCGGGCAGCCGGAAGT
AATTGAAGAAAGTTCTTGAAAGCTTGTGTGGTTTTCGCATAGCATTGAAA
GAGGCGTTACTGGCAGCAGCGGCAGCGGCGGTGGCGGCCTCGGCAGACTG
CAATCAGAAGCGTTCGTTAACGTCGTGGGACGGACGATGAAGGATTGACT
CGTGGCGCCTGTACCGGCGCAACTACAGCCAACTCTTCCCAACACCGGCC
ATGTCAGCGCCAGCCGACGGACCGAAATCGCCATGGAACGGCTCGGAGGC
GCGTCGTCTTCCAAACACAGCCGGCTCACGCCCTGAAGCCGCCCGCGCGT
TAAACGGGTCGGCTCGTCGGGCCGCTGCAGCTACAACAGAACTGCCGGCC
GGAACTGATGGATAGGCGCTATGCGACAGCGCGATGACGACTGTTAGATC
CCTTGTGGGTGTGTACGGCACCGCTGGCGACTACTAGGGAGGAGGAGAAG
TCGTCAGACGTCCGGGCGGCGCCGGTGATGTCAATTGAGGCGTTCTATGA
ATGCCGAAGGCGATTCGATCAGCCAAGCCAACTCTCAGCGACGGGTGTCC
TTCCCAACGCCGTTCCGACGCCTTTGGCGTTTTTTCCTACGTTTATGAGA
CGAGAAGCTGCAGCGGTGGCAACATTGGGCGCGACTGCAGCAAGTTTTGG
CAGCGGCACATGCGATGATCACGACGGTGTCGACAGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig11851:63..1051+

>mRNA_P-wetherbeei_contig11851.1.1 ID=mRNA_P-wetherbeei_contig11851.1.1|Name=mRNA_P-wetherbeei_contig11851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig11851:63..1051+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGCGGTATCTGAAGGGCATGCTGGCGAATTTGGGACGGCTGCCAGC
CGAGAAGATTCATAACTTGTTAAAGATGTTCATGAGTCACGGGGAACAAA
AATACGAGAGGTCGATGCCGGAGCTGGTGCAGTTCCTGCGCCGGCTGGCG
GGTCAGGGAAAGCTAGAGCAGACGGGAGCGGATTACCACCTGCCGCCGCC
GGCGCAGCAGCCGGGCAGCCGGAAGTAA
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